Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Reverse (-)

3082429 .. 3085564

Gene Structure 3136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGGAAGAGGGAGAGGGAGAACCCATGTGGGGTTTGTGGGCACTATCACAAATACGAAGAGGGCGAGGTCTGTGGGGTCTGCGGCCATCGAATGCCGGCGGTAGCTGAGAGAACTTCGATCGATCAAGTTAGTGCTTTTCCGTCTGAGATCTTGCCGGAGTTTCTCTATTTGGGCAGCTACGATAACGCTTCTCGCTCTGAACTTCTCAAGACTCAGGGAATCTCTCGTGTTCTAAATACGGTTCCTGCTTGTCAAAATCTCTATAAGAATTCGTTCACTTATCACTACCTCCAAGATGACAAAATTTTGCAATTTGAGGATGCAAATCAATTTTTAGAGCAATGTGAAAGGGACAAAGCTCGCGTTTTAGTGCACTGCATGTCTGGGAAAAATAGGTCTCCAGCTATTGTAATAGCTTATTTGATGAAATCGAGGGGATGGAGACTTGCACCGAGTTACCAGTGGGTGAAAGAACGGAGACCTGCTGTTGAATTAAGTGAAGCAAATTACCGTCAACTGCAGGAGTACGAGGAAAAGATCTGTGGATCAACTGACAGTAGCCACCCAACCTTGCCAGCCTTCCCACCGGCAGCTGCACCTTCGTTTAGCTTTGGCTTCCCAAGAGCCAATGATCCAGTTCCCCTACCTGCATTTAACAATGTTGGCGCTACCTCCATTTTTGCCCGGCCTCCCATAGACATTCCTCCTCAAGACTTTACATTCGGAGCCAGCCAGCCTCAAAATGTCATCTCAGGAAGCGCTTTCAGTGCAAACCTGCAGAATTCAAACCCCAGTGATATTCCAATGGATAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

274

Amino Acids

30.5

Weight (kDa)

6.09

Isoelectric Point (pI)

64.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	493, 658, 786
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	84, 101
AclWI	GGATC	2 cut(s)	556, 629
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	271, 306, 784
AfaI	GTAC	1 cut(s)	530
AfeI	AGCGCT	1 cut(s)	763
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	494, 789
AjuI	GAANNNNNNNTTGG	1 cut(s)	799
AluBI	AGCT	7 cut(s)	107, 180, 362, 407, 419, 596, 612
AluI	AGCT	7 cut(s)	107, 180, 362, 407, 419, 596, 612
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	3 cut(s)	405, 439, 475
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	556, 629
Aor51HI	AGCGCT	1 cut(s)	763
AoxI	GGCC	2 cut(s)	85, 689
ApaLI	GTGCAC	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	177, 593, 596
ApoI	RAATTY	3 cut(s)	271, 306, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	671, 764
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	481
BaeGI	GKGCMC	2 cut(s)	45, 378
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	189, 583, 605
BccI	CCATC	2 cut(s)	96, 435
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	3 cut(s)	405, 439, 475
BfmI	CTRYAG	2 cut(s)	521, 779
BfoI	RGCGCY	2 cut(s)	672, 765
BfuAI	ACCTGC	3 cut(s)	493, 658, 786
BglII	AGATCT	2 cut(s)	150, 540
BisI	GCNGC	4 cut(s)	85, 178, 594, 597
BlsI	GCNGC	4 cut(s)	86, 179, 595, 598
Bme1390I	CCNGG	1 cut(s)	688
BmiI	GGNNCC	2 cut(s)	246, 730
BmrFI	CCNGG	1 cut(s)	688
BmrI	ACTGGG	1 cut(s)	789
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	789
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	2 cut(s)	194, 696
BpuMI	CCSGG	1 cut(s)	688
Bsa29I	ATCGAT	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	2 cut(s)	405, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	2 cut(s)	97, 589
Bse1I	ACTGG	3 cut(s)	463, 638, 795
Bse3DI	GCAATG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	123
BseGI	GGATG	2 cut(s)	328, 446
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	4 cut(s)	99, 138, 230, 768
BseNI	ACTGG	3 cut(s)	463, 638, 795
BseRI	GAGGAG	1 cut(s)	699
BseSI	GKGCMC	2 cut(s)	45, 378
BseXI	GCAGC	3 cut(s)	189, 583, 605
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	87, 691
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	98, 158, 590, 688
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	405, 439, 475
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	87, 691
Bso31I	GGTCTC	2 cut(s)	405, 475
Bsp1286I	GDGCHC	2 cut(s)	45, 378
Bsp143I	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
BspACI	CCGC	2 cut(s)	84, 101
BspANI	GGCC	2 cut(s)	87, 691
BspCNI	CTCAG	4 cut(s)	100, 139, 229, 767
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	246, 730
BspMAI	CTGCAG	2 cut(s)	525, 783
BspMI	ACCTGC	3 cut(s)	493, 658, 786
BspPI	GGATC	2 cut(s)	556, 629
BspTNI	GGTCTC	2 cut(s)	405, 475
BsrDI	GCAATG	1 cut(s)	350
BsrFI	RCCGGY	2 cut(s)	97, 589
BsrI	ACTGG	3 cut(s)	463, 638, 795
BssAI	RCCGGY	2 cut(s)	97, 589
BssMI	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	244, 515, 560
Bst6I	CTCTTC	2 cut(s)	2, 54
BstC8I	GCNNGC	5 cut(s)	99, 364, 579, 733, 737
BstDEI	CTNAG	4 cut(s)	108, 147, 216, 754
BstF5I	GGATG	2 cut(s)	328, 446
BstFNI	CGCG	1 cut(s)	366
BstH2I	RGCGCY	2 cut(s)	672, 765
BstHHI	GCGC	2 cut(s)	671, 764
BstKTI	GATC	6 cut(s)	123, 127, 153, 543, 551, 637
BstMAI	GTCTC	3 cut(s)	405, 439, 475
BstMBI	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	686
BstSFI	CTRYAG	2 cut(s)	521, 779
BstSLI	GKGCMC	2 cut(s)	45, 378
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	189, 583, 605
BstX2I	RGATCY	2 cut(s)	150, 540
BstYI	RGATCY	2 cut(s)	150, 540
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	87, 691
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	328, 446
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	4 cut(s)	376, 470, 775, 802
BveI	ACCTGC	3 cut(s)	493, 658, 786
Cac8I	GCNNGC	5 cut(s)	99, 364, 579, 733, 737
CfoI	GCGC	2 cut(s)	671, 764
Cfr10I	RCCGGY	2 cut(s)	97, 589
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	2 cut(s)	27, 382
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	108, 147, 216, 754
DpnI	GATC	6 cut(s)	122, 126, 152, 542, 550, 636
DpnII	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	2, 54
EarI	CTCTTC	2 cut(s)	2, 54
Eco31I	GGTCTC	2 cut(s)	405, 475
Eco47III	AGCGCT	1 cut(s)	763
EcoRI	GAATTC	2 cut(s)	271, 784
FaeI	CATG	2 cut(s)	30, 385
FaiI	YATR	4 cut(s)	28, 267, 383, 698
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	26, 381
Fnu4HI	GCNGC	4 cut(s)	85, 178, 594, 597
FokI	GGATG	2 cut(s)	335, 453
Fsp4HI	GCNGC	4 cut(s)	85, 178, 594, 597
GlaI	GCGC	2 cut(s)	670, 763
GluI	GCNGC	4 cut(s)	85, 178, 594, 597
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	2 cut(s)	672, 765
HaeIII	GGCC	2 cut(s)	87, 691
HapII	CCGG	4 cut(s)	98, 158, 590, 688
HhaI	GCGC	2 cut(s)	671, 764
Hin1II	CATG	2 cut(s)	30, 385
Hin6I	GCGC	2 cut(s)	669, 762
HinP1I	GCGC	2 cut(s)	669, 762
HincII	GTYRAC	1 cut(s)	518
HindII	GTYRAC	1 cut(s)	518
HinfI	GANTC	2 cut(s)	214, 222
HpaII	CCGG	4 cut(s)	98, 158, 590, 688
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	3 cut(s)	279, 376, 518
Hpy188I	TCNGA	3 cut(s)	148, 202, 728
Hpy188III	TCNNGA	4 cut(s)	211, 713, 756, 819
Hpy8I	GTNNAC	3 cut(s)	279, 376, 518
HpyAV	CCTTC	2 cut(s)	592, 612
HpyCH4III	ACNGT	3 cut(s)	244, 515, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	4 cut(s)	108, 147, 216, 754
Hsp92II	CATG	2 cut(s)	30, 385
HspAI	GCGC	2 cut(s)	669, 762
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	3 cut(s)	189, 583, 605
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	6 cut(s)	122, 126, 152, 542, 550, 636
MboI	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
MboII	GAAGA	2 cut(s)	19, 71
MflI	RGATCY	2 cut(s)	150, 540
MhlI	GDGCHC	2 cut(s)	45, 378
MluCI	AATT	7 cut(s)	271, 306, 314, 332, 494, 508, 784
MlyI	GAGTC	1 cut(s)	208
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	2 cut(s)	497, 657
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	4 cut(s)	98, 158, 590, 688
MspR9I	CCNGG	1 cut(s)	688
Mva1269I	GAATGC	1 cut(s)	99
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	770
NaeI	GCCGGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	688
NdeII	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	30, 385
NlaIV	GGNNCC	2 cut(s)	246, 730
NspI	RCATGY	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	86, 179, 595, 598
Ple19I	CGATCG	1 cut(s)	123
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	246, 730
PstI	CTGCAG	2 cut(s)	525, 783
PsuI	RGATCY	2 cut(s)	150, 540
PvuI	CGATCG	1 cut(s)	123
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	497, 657
SatI	GCNGC	4 cut(s)	85, 178, 594, 597
Sau3AI	GATC	6 cut(s)	120, 124, 150, 540, 548, 634
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	688
SduI	GDGCHC	2 cut(s)	45, 378
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	2 cut(s)	521, 779
SmlI	CTYRAG	2 cut(s)	209, 711
SmoI	CTYRAG	2 cut(s)	209, 711
Sse9I	AATT	7 cut(s)	271, 306, 314, 332, 494, 508, 784
SsiI	CCGC	2 cut(s)	84, 101
StyD4I	CCNGG	1 cut(s)	686
TaaI	ACNGT	3 cut(s)	244, 515, 560
TaqI	TCGA	4 cut(s)	91, 119, 123, 434
TasI	AATT	7 cut(s)	271, 306, 314, 332, 494, 508, 784
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	2 cut(s)	497, 657
Tru9I	TTAA	2 cut(s)	497, 657
TscAI	CASTG	4 cut(s)	383, 470, 775, 802
TseI	GCWGC	3 cut(s)	177, 593, 596
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	2 cut(s)	132, 493
TspRI	CASTG	4 cut(s)	383, 470, 775, 802
VneI	GTGCAC	1 cut(s)	374
XapI	RAATTY	3 cut(s)	271, 306, 784
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.