Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Forward (+)

21358361 .. 21362365

Gene Structure 4005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G206700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGGAAGAGGGAGAGGGAGAATCCATGTGGGGTTTGTGGCCACTATCACAAATACGAAGAAGGAGAGGTCTGTGGGGTTTGTGGCCATCGAATGCCGGATTTATCTGACAAAACTTCGATCCCAGTGAGTGCCTTTCCTTCTGCGATCGTGCCAGAGTTTCTCTATTTGGGTAGCTACGATAACGCTTCGCGCTCTGAGCTTCTCAAGACTCAGGGAATCTCTCGTGTTCTAAACACGGTTCCAGCTTGTCAAAATCTTTACAAGAACTCTTTCACTTATCACTACCTCCAAGATGACAAAATTTTGCAATTTGAGGATGCAAATCAATTTTTAGAGCAGTGTGAAAGGGACAAAGCTCGTGTTTTAGTGCACTGCATGTCAGGGAAAAATAGGTCGCCGGCTATTGTAATAGCTTATTTGATGAAATCCAGAGGATGGAGACTTGCCCAGTGTTACCAGTGGGTGAAAGAACGGAGACCATCTGTTGAATTAAGTGAAGCTTACTACCGGCAACTGCAGGAGTATGAGGAGAAGATCTTTGGATCAGGTGGTAGTGGCAACCCAACTTTGCCAGCCTTCCCACCGGTAGTAGCTGCACCTTCGTTCAGCTTTGGATTCCCAAGAGTTCATGATTCAGTTCCTATCCCTGCATTTAACAATGTTGGCACGACCTCCATTTTTTCCCGGCCTGCCCTAGATATTCCTCCGCTGGAGTTTACATTTGGAGCCAGCCAGGCTCGAAATGATATCTCCGGGAGTACTTTTGGTGCGAGTCCACCAAATTCAAACACAAGTGATATTTCAATGGATAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

274

Amino Acids

30.44

Weight (kDa)

6.6

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccII	CGCG	1 cut(s)	193
AciI	CCGC	1 cut(s)	710
AclWI	GGATC	2 cut(s)	115, 553
AcoI	YGGCCR	2 cut(s)	40, 85
AcsI	RAATTY	2 cut(s)	303, 784
AfaI	GTAC	1 cut(s)	763
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	3 cut(s)	491, 789, 807
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	8 cut(s)	177, 202, 248, 359, 416, 503, 596, 612
AluI	AGCT	8 cut(s)	177, 202, 248, 359, 416, 503, 596, 612
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	436, 472
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	115, 553
AoxI	GGCC	3 cut(s)	40, 85, 689
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	303, 784
AsiGI	ACCGGT	1 cut(s)	586
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	195
AsuC2I	CCSGG	2 cut(s)	688, 757
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	2 cut(s)	42, 87
BauI	CACGAG	2 cut(s)	225, 360
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	3 cut(s)	96, 432, 490
BciT130I	CCWGG	1 cut(s)	737
BcnI	CCSGG	2 cut(s)	688, 757
BcoDI	GTCTC	2 cut(s)	436, 472
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	737
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
BmcAI	AGTACT	1 cut(s)	763
Bme1390I	CCNGG	3 cut(s)	688, 737, 757
BmiI	GGNNCC	2 cut(s)	243, 730
BmrFI	CCNGG	3 cut(s)	688, 737, 757
BmrI	ACTGGG	2 cut(s)	119, 445
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	2 cut(s)	119, 445
BpmI	CTGGAG	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	688, 757
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	472
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse118I	RCCGGY	3 cut(s)	400, 510, 586
Bse1I	ACTGG	3 cut(s)	125, 451, 460
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	737
BseGI	GGATG	2 cut(s)	325, 443
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	189, 227
BseNI	ACTGG	3 cut(s)	125, 451, 460
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	42, 87, 691
BshTI	ACCGGT	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	6 cut(s)	98, 401, 511, 587, 688, 756
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	2 cut(s)	436, 472
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	42, 87, 691
Bso31I	GGTCTC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	120, 147, 537, 545
BspACI	CCGC	1 cut(s)	710
BspANI	GGCC	3 cut(s)	42, 87, 691
BspCNI	CTCAG	2 cut(s)	190, 226
BspFNI	CGCG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	243, 730
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	2 cut(s)	115, 553
BspTNI	GGTCTC	1 cut(s)	472
BsrFI	RCCGGY	3 cut(s)	400, 510, 586
BsrI	ACTGG	3 cut(s)	125, 451, 460
BssAI	RCCGGY	3 cut(s)	400, 510, 586
BssMI	GATC	4 cut(s)	120, 147, 537, 545
BssSI	CACGAG	2 cut(s)	225, 360
Bst2BI	CACGAG	2 cut(s)	225, 360
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	4 cut(s)	402, 576, 693, 733
BstDEI	CTNAG	2 cut(s)	198, 213
BstF5I	GGATG	2 cut(s)	325, 443
BstFNI	CGCG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	4 cut(s)	123, 150, 540, 548
BstMAI	GTCTC	2 cut(s)	436, 472
BstMBI	GATC	4 cut(s)	120, 147, 537, 545
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 737
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	3 cut(s)	686, 735, 755
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	537
BstYI	RGATCY	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	42, 87, 691
BtsCI	GGATG	2 cut(s)	325, 443
BtsI	GCAGTG	2 cut(s)	347, 373
BtsIMutI	CAGTG	5 cut(s)	132, 347, 373, 458, 467
Cac8I	GCNNGC	4 cut(s)	402, 576, 693, 733
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	3 cut(s)	400, 510, 586
Csp6I	GTAC	1 cut(s)	762
CspAI	ACCGGT	1 cut(s)	586
CviAII	CATG	3 cut(s)	27, 379, 632
CviQI	GTAC	1 cut(s)	762
DdeI	CTNAG	2 cut(s)	198, 213
DpnI	GATC	4 cut(s)	122, 149, 539, 547
DpnII	GATC	4 cut(s)	120, 147, 537, 545
EaeI	YGGCCR	2 cut(s)	40, 85
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco31I	GGTCTC	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	735
EcoRV	GATATC	1 cut(s)	751
FaeI	CATG	3 cut(s)	30, 382, 635
FaiI	YATR	4 cut(s)	28, 380, 528, 633
FalI	AAGNNNNNCTT	2 cut(s)	487, 519
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	26, 378, 631
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	2 cut(s)	332, 450
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	3 cut(s)	42, 87, 691
HapII	CCGG	6 cut(s)	98, 401, 511, 587, 688, 756
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	30, 382, 635
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	6 cut(s)	22, 211, 219, 618, 635, 775
HpaII	CCGG	6 cut(s)	98, 401, 511, 587, 688, 756
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	3 cut(s)	373, 720, 779
Hpy188I	TCNGA	2 cut(s)	109, 199
Hpy188III	TCNNGA	4 cut(s)	208, 432, 632, 819
Hpy8I	GTNNAC	3 cut(s)	373, 720, 779
HpyAV	CCTTC	4 cut(s)	56, 150, 589, 612
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	7 cut(s)	310, 323, 373, 378, 520, 599, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 737
HpyF3I	CTNAG	2 cut(s)	198, 213
Hsp92II	CATG	3 cut(s)	30, 382, 635
HspAI	GCGC	1 cut(s)	193
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	120, 147, 537, 545
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	698
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	4 cut(s)	122, 149, 539, 547
MboI	GATC	4 cut(s)	120, 147, 537, 545
MboII	GAAGA	3 cut(s)	19, 71, 547
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	2 cut(s)	42, 87
MluCI	AATT	5 cut(s)	303, 311, 329, 491, 784
MluNI	TGGCCA	2 cut(s)	42, 87
MlyI	GAGTC	2 cut(s)	205, 784
MnlI	CCTC	9 cut(s)	3, 9, 61, 299, 310, 428, 523, 685, 717
Mox20I	TGGCCA	2 cut(s)	42, 87
MroNI	GCCGGC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	2 cut(s)	42, 87
MseI	TTAA	2 cut(s)	494, 657
Msp20I	TGGCCA	2 cut(s)	42, 87
MspA1I	CMGCKG	1 cut(s)	712
MspI	CCGG	6 cut(s)	98, 401, 511, 587, 688, 756
MspR9I	CCNGG	3 cut(s)	688, 737, 757
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	737
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	199, 737
NaeI	GCCGGC	1 cut(s)	402
NciI	CCSGG	2 cut(s)	688, 757
NdeII	GATC	4 cut(s)	120, 147, 537, 545
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	3 cut(s)	30, 382, 635
NlaIV	GGNNCC	2 cut(s)	243, 730
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	1 cut(s)	631
PctI	GAATGC	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	4 cut(s)	22, 219, 618, 635
PflMI	CCANNNNNTGG	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	755
PinAI	ACCGGT	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	598
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	2 cut(s)	205, 783
PpsI	GAGTC	2 cut(s)	205, 783
Psp6I	CCWGG	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	2 cut(s)	243, 730
PstI	CTGCAG	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	537
PvuI	CGATCG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	763
RsaNI	GTAC	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	494, 657
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	4 cut(s)	120, 147, 537, 545
ScaI	AGTACT	1 cut(s)	763
SchI	GAGTC	2 cut(s)	205, 784
ScrFI	CCNGG	3 cut(s)	688, 737, 757
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	303, 311, 329, 491, 784
SsiI	CCGC	1 cut(s)	710
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	686, 735, 755
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	3 cut(s)	91, 119, 742
TasI	AATT	5 cut(s)	303, 311, 329, 491, 784
TatI	WGTACW	1 cut(s)	761
TfiI	GAWTC	4 cut(s)	22, 219, 618, 635
Tru1I	TTAA	2 cut(s)	494, 657
Tru9I	TTAA	2 cut(s)	494, 657
TscAI	CASTG	5 cut(s)	132, 347, 380, 458, 467
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	440, 620
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	5 cut(s)	132, 347, 380, 458, 467
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	371
XapI	RAATTY	2 cut(s)	303, 784
XceI	RCATGY	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	698
ZrmI	AGTACT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.