Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000195.1

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Forward (+)

178560 .. 182126

Gene Structure 3567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000195.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ctgcgttctgatctctcgtggctctacctttctctgtttctcgccaccgtctttagctcacagtcccccagaggccaaagccgaagcctttatataaatccgataacagccagaacccaaaaagaagcttccttgcaacgcccgaggagtagagggattatgaggaagagggagagggagaatccatgtggggtttgtggccactatcacaaatacgaggagggagaggtctgcggcatctgcggccaccgtgttccggctgtttccgagaaaacggcgatccaagttagcgcctttccgtccgagatcctgccggagtttctctacttgggcagctacgacaacgcctctcgctccgagcttctcaagactcagggaatctctcgtgttctcaacacggtacccacttgtcaaaatctttacaagaactctttcacctaccattaccttcaagatgacaaaactttgcaatttgaggatgcaaaccaatttttagagaaatgtgaaagggataaagctcgtgttttagtgcactgcatgtcaggaaaaaatagatccccagccatcgtaatagcttatttgatgaaatcgagaggatggagactagcacaggcttatcagtgggtcaaagaacgaagaccagctgttgaattaactgaagctgtttatcggcaactacaggagtatgaggagaagatctttgggtcaattgacagtaccaaccaaacgttggcggccttcccgccagtagctgcaccttcatttggctttggtttccccaaagctagtgatggagttcctatccctgcattcaacaatgtgagcgctccctccatttttgctagacccaccttagatatccctccacaggagtttacatttggagctggccagactcaaagtaatatctcaggaagcccttttactgccagtcctccaaatccaaatgctactgatatttctatggatagtacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

325

Amino Acids

36.34

Weight (kDa)

8.76

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	730
AciI	CCGC	4 cut(s)	234, 243, 734, 743
AclI	AACGTT	1 cut(s)	728
AclWI	GGATC	3 cut(s)	274, 301, 549
AcoI	YGGCCR	3 cut(s)	199, 244, 889
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	3 cut(s)	402, 718, 973
AfeI	AGCGCT	1 cut(s)	826
AfiI	CCNNNNNNNGG	4 cut(s)	256, 730, 764, 868
AgsI	TTSAA	3 cut(s)	452, 650, 814
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	595
Alw44I	GTGCAC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	274, 301, 549
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	142
Aor51HI	AGCGCT	1 cut(s)	826
AoxI	GGCC	5 cut(s)	73, 199, 244, 735, 889
ApaLI	GTGCAC	1 cut(s)	530
ApeKI	GCWGC	2 cut(s)	333, 752
Asp700I	GAANNNNTTC	1 cut(s)	431
Asp718I	GGTACC	1 cut(s)	400
AspLEI	GCGC	2 cut(s)	293, 827
AsuHPI	GGTGA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	534
BalI	TGGCCA	2 cut(s)	201, 891
BanI	GGYRCC	1 cut(s)	400
BarI	GAAGNNNNNNTAC	2 cut(s)	907, 939
BauI	CACGAG	3 cut(s)	16, 384, 519
BbsI	GAAGAC	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	345, 739
BccI	CCATC	3 cut(s)	572, 591, 785
BceAI	ACGGC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	3 cut(s)	605, 786, 843
BfmI	CTRYAG	1 cut(s)	677
BfoI	RGCGCY	2 cut(s)	294, 828
BglII	AGATCT	1 cut(s)	696
BisI	GCNGC	5 cut(s)	235, 244, 334, 735, 753
BlsI	GCNGC	5 cut(s)	236, 245, 335, 736, 754
BmcAI	AGTACT	1 cut(s)	973
BmeT110I	CYCGRG	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	402
BmsI	GCATC	2 cut(s)	246, 469
BpiI	GAAGAC	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 730, 764, 868
Bse1I	ACTGG	2 cut(s)	746, 930
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	484, 602
BseLI	CCNNNNNNNGG	4 cut(s)	256, 730, 764, 868
BseMII	CTCAG	2 cut(s)	386, 924
BseNI	ACTGG	2 cut(s)	746, 930
BseRI	GAGGAG	3 cut(s)	160, 233, 704
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	345, 739
BseYI	CCCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	738
BshFI	GGCC	5 cut(s)	75, 201, 246, 737, 891
BshNI	GGYRCC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	257, 314
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	4 cut(s)	256, 730, 764, 868
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	5 cut(s)	75, 201, 246, 737, 891
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	10, 279, 306, 554, 696
BspACI	CCGC	4 cut(s)	234, 243, 734, 743
BspANI	GGCC	5 cut(s)	75, 201, 246, 737, 891
BspCNI	CTCAG	2 cut(s)	385, 923
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	3 cut(s)	274, 301, 549
BspT107I	GGYRCC	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	746, 930
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	5 cut(s)	10, 279, 306, 554, 696
BssSI	CACGAG	3 cut(s)	16, 384, 519
Bst2BI	CACGAG	3 cut(s)	16, 384, 519
Bst4CI	ACNGT	5 cut(s)	49, 63, 251, 400, 716
Bst6I	CTCTTC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	889
BstDEI	CTNAG	3 cut(s)	372, 853, 910
BstF5I	GGATG	2 cut(s)	484, 602
BstH2I	RGCGCY	2 cut(s)	294, 828
BstHHI	GCGC	2 cut(s)	293, 827
BstKTI	GATC	5 cut(s)	13, 282, 309, 557, 699
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	5 cut(s)	10, 279, 306, 554, 696
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 243
BstNSI	RCATGY	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	677
BstSLI	GKGCMC	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	345, 739
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	3 cut(s)	306, 554, 696
BstYI	RGATCY	3 cut(s)	306, 554, 696
BsuRI	GGCC	5 cut(s)	75, 201, 246, 737, 891
BtsCI	GGATG	2 cut(s)	484, 602
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	532, 626
Cac8I	GCNNGC	1 cut(s)	889
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	2 cut(s)	293, 827
Csp6I	GTAC	3 cut(s)	401, 717, 972
CviAII	CATG	2 cut(s)	186, 538
CviQI	GTAC	3 cut(s)	401, 717, 972
DdeI	CTNAG	3 cut(s)	372, 853, 910
DpnI	GATC	5 cut(s)	12, 281, 308, 556, 698
DpnII	GATC	5 cut(s)	10, 279, 306, 554, 696
EaeI	YGGCCR	3 cut(s)	199, 244, 889
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	859
Eco47III	AGCGCT	1 cut(s)	826
Eco57I	CTGAAG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	859
FaeI	CATG	2 cut(s)	189, 541
FaiI	YATR	7 cut(s)	93, 95, 161, 187, 539, 687, 965
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	185, 537
FauI	CCCGC	1 cut(s)	750
Fnu4HI	GCNGC	5 cut(s)	235, 244, 334, 735, 753
FokI	GGATG	2 cut(s)	491, 609
Fsp4HI	GCNGC	5 cut(s)	235, 244, 334, 735, 753
FspBI	CTAG	3 cut(s)	605, 786, 843
GlaI	GCGC	2 cut(s)	292, 826
GluI	GCNGC	5 cut(s)	235, 244, 334, 735, 753
GsaI	CCCAGC	1 cut(s)	563
HaeII	RGCGCY	2 cut(s)	294, 828
HaeIII	GGCC	5 cut(s)	75, 201, 246, 737, 891
HapII	CCGG	2 cut(s)	257, 314
HhaI	GCGC	2 cut(s)	293, 827
Hin1II	CATG	2 cut(s)	189, 541
Hin6I	GCGC	2 cut(s)	291, 825
HinP1I	GCGC	2 cut(s)	291, 825
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	4 cut(s)	181, 370, 378, 895
HpaII	CCGG	2 cut(s)	257, 314
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	532, 876
Hpy188I	TCNGA	5 cut(s)	10, 102, 268, 304, 358
Hpy188III	TCNNGA	5 cut(s)	367, 452, 543, 591, 912
Hpy8I	GTNNAC	2 cut(s)	532, 876
HpyAV	CCTTC	3 cut(s)	458, 748, 768
HpyCH4III	ACNGT	5 cut(s)	49, 63, 251, 400, 716
HpyCH4IV	ACGT	1 cut(s)	728
HpyCH4V	TGCA	7 cut(s)	136, 469, 482, 532, 537, 755, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 243
HpyF3I	CTNAG	3 cut(s)	372, 853, 910
HpySE526I	ACGT	1 cut(s)	728
Hsp92II	CATG	2 cut(s)	189, 541
HspAI	GCGC	2 cut(s)	291, 825
KpnI	GGTACC	1 cut(s)	404
Kzo9I	GATC	5 cut(s)	10, 279, 306, 554, 696
LmnI	GCTCC	3 cut(s)	359, 832, 884
Lsp1109I	GCAGC	2 cut(s)	345, 739
LweI	GCATC	2 cut(s)	246, 469
MaeI	CTAG	3 cut(s)	605, 786, 843
MaeII	ACGT	1 cut(s)	728
MalI	GATC	5 cut(s)	12, 281, 308, 556, 698
MboI	GATC	5 cut(s)	10, 279, 306, 554, 696
MboII	GAAGA	3 cut(s)	178, 648, 706
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	3 cut(s)	306, 554, 696
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	2 cut(s)	201, 891
MluCI	AATT	4 cut(s)	470, 488, 650, 708
MluNI	TGGCCA	2 cut(s)	201, 891
MlyI	GAGTC	2 cut(s)	364, 889
Mox20I	TGGCCA	2 cut(s)	201, 891
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	2 cut(s)	201, 891
MseI	TTAA	1 cut(s)	653
Msp20I	TGGCCA	2 cut(s)	201, 891
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	2 cut(s)	257, 314
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	809
MwoI	GCNNNNNNNGC	2 cut(s)	240, 243
NdeII	GATC	5 cut(s)	10, 279, 306, 554, 696
NlaIII	CATG	2 cut(s)	189, 541
NlaIV	GGNNCC	1 cut(s)	402
NspI	RCATGY	1 cut(s)	541
PctI	GAATGC	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	181, 378
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	5 cut(s)	236, 245, 335, 736, 754
PleI	GAGTC	2 cut(s)	364, 889
PpsI	GAGTC	2 cut(s)	364, 889
Psp1406I	AACGTT	1 cut(s)	728
PspFI	CCCAGC	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	3 cut(s)	306, 554, 696
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	3 cut(s)	402, 718, 973
RsaNI	GTAC	3 cut(s)	401, 717, 972
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	5 cut(s)	235, 244, 334, 735, 753
Sau3AI	GATC	5 cut(s)	10, 279, 306, 554, 696
ScaI	AGTACT	1 cut(s)	973
SchI	GAGTC	2 cut(s)	364, 889
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	246, 469
SfcI	CTRYAG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	4 cut(s)	470, 488, 650, 708
SsiI	CCGC	4 cut(s)	234, 243, 734, 743
SspMI	CTAG	3 cut(s)	605, 786, 843
TaaI	ACNGT	5 cut(s)	49, 63, 251, 400, 716
TaiI	ACGT	1 cut(s)	731
TaqI	TCGA	1 cut(s)	590
TasI	AATT	4 cut(s)	470, 488, 650, 708
TatI	WGTACW	1 cut(s)	971
TauI	GCSGC	3 cut(s)	237, 246, 737
TfiI	GAWTC	2 cut(s)	181, 378
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	2 cut(s)	539, 626
TseI	GCWGC	2 cut(s)	333, 752
TspDTI	ATGAA	2 cut(s)	599, 750
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	539, 626
Van91I	CCANNNNNTGG	1 cut(s)	730
VneI	GTGCAC	1 cut(s)	530
XceI	RCATGY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	3 cut(s)	605, 786, 843
ZrmI	AGTACT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.