Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Reverse (-)

8998504 .. 9002408

Gene Structure 3905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1117100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGGAAGAGGGAGAGGGAGAACCCATGTGGGGTTTGTGGGCACTATCACAAATACGAAGAGGGCGAGGTCTGTGGGGTCTGCGGCCATCGAATGCCGGCGGTAGCTGAGAGAACTTCGATCCAAGTTAGTGCTTTTCCGTCTGAGATCTTGCCGGAGTTTCTCTATTTGGGCAGCTACGATAACGCTTCTCGTTCTGAACTTCTCAAGACTCAGGGAATCTCTCGTGTTCTAAATACGGTTCCTGCTTGTCAAAATCTCTATAAGAATTCGTTCACTTATCACTATCTCCAAGATGACAAAATTTTGCAATTTGAGGGTGCAAATCAATTTTTAGAGCAATGTGAAAGGGACAAAGCTCGCGTTTTAGTGCACTGCATGTCTGGGAAAAATAGGTCTCCGGCTATTGTAATAGCATATTTGATGAAATCGAGGGGATGGAGACTTGCACCGAGTTACCAGTGGGTGAAAGAACGGAGACCTGCTGTTGAATTAAGTGAAGCAAATTACCATCAACTGCAGGAGTACGAGGAAAAGATCTTTGGATCAACCGACAGTAGCAACCCAACCTTGCCAGCCTTTCCACCGGCTGCACCTTCGTTTAGCTTTGGCTTCCCAAGAGCCAATGATCCAGTTCCCCTACCTGCATTTAACAATGATGGTGCTACCTCCATTTTTGCCCGGCCTCCCATAGACATTCCTCCTCAAGACTTTACATTCGGAGCCAGCCAGCCTCAAAATGTCATCTCAGGAAGCGCTTTCAGGGCAAACCTGCAGAATTCAAACCCCAGTGATATTCCAATGGATAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

272

Amino Acids

30.35

Weight (kDa)

6.32

Isoelectric Point (pI)

64.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	55 - 178	9.1e-25	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	490, 652, 780
AccII	CGCG	1 cut(s)	363
AciI	CCGC	2 cut(s)	84, 101
AclWI	GGATC	3 cut(s)	115, 553, 623
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	268, 303, 778
AfaI	GTAC	1 cut(s)	527
AfeI	AGCGCT	1 cut(s)	757
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	491, 783
AjuI	GAANNNNNNNTTGG	3 cut(s)	525, 557, 793
AluBI	AGCT	4 cut(s)	107, 177, 359, 606
AluI	AGCT	4 cut(s)	107, 177, 359, 606
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	402, 436, 472
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	115, 553, 623
Aor51HI	AGCGCT	1 cut(s)	757
AoxI	GGCC	2 cut(s)	85, 683
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	174, 590
ApoI	RAATTY	3 cut(s)	268, 303, 778
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	758
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	2 cut(s)	45, 375
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	186, 577
BccI	CCATC	4 cut(s)	96, 432, 519, 653
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	3 cut(s)	402, 436, 472
BfmI	CTRYAG	2 cut(s)	518, 773
BfoI	RGCGCY	1 cut(s)	759
BfuAI	ACCTGC	3 cut(s)	490, 652, 780
BglII	AGATCT	2 cut(s)	147, 537
BisI	GCNGC	3 cut(s)	85, 175, 591
BlsI	GCNGC	3 cut(s)	86, 176, 592
Bme1390I	CCNGG	1 cut(s)	682
BmiI	GGNNCC	2 cut(s)	243, 724
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	191, 690
BpuMI	CCSGG	1 cut(s)	682
BsaI	GGTCTC	2 cut(s)	402, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	2 cut(s)	97, 586
Bse1I	ACTGG	3 cut(s)	460, 632, 789
Bse3DI	GCAATG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	4 cut(s)	99, 135, 227, 762
BseNI	ACTGG	3 cut(s)	460, 632, 789
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	2 cut(s)	45, 375
BseXI	GCAGC	2 cut(s)	186, 577
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	87, 685
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	5 cut(s)	98, 155, 401, 587, 682
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	402, 436, 472
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	87, 685
Bso31I	GGTCTC	2 cut(s)	402, 472
Bsp1286I	GDGCHC	2 cut(s)	45, 375
Bsp143I	GATC	5 cut(s)	120, 147, 537, 545, 628
BspACI	CCGC	2 cut(s)	84, 101
BspANI	GGCC	2 cut(s)	87, 685
BspCNI	CTCAG	4 cut(s)	100, 136, 226, 761
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	243, 724
BspMAI	CTGCAG	2 cut(s)	522, 777
BspMI	ACCTGC	3 cut(s)	490, 652, 780
BspPI	GGATC	3 cut(s)	115, 553, 623
BspTNI	GGTCTC	2 cut(s)	402, 472
BsrDI	GCAATG	1 cut(s)	347
BsrFI	RCCGGY	2 cut(s)	97, 586
BsrI	ACTGG	3 cut(s)	460, 632, 789
BssAI	RCCGGY	2 cut(s)	97, 586
BssMI	GATC	5 cut(s)	120, 147, 537, 545, 628
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	241, 557
Bst6I	CTCTTC	2 cut(s)	2, 54
BstC8I	GCNNGC	5 cut(s)	99, 361, 576, 727, 731
BstDEI	CTNAG	4 cut(s)	108, 144, 213, 748
BstF5I	GGATG	1 cut(s)	443
BstFNI	CGCG	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	758
BstKTI	GATC	5 cut(s)	123, 150, 540, 548, 631
BstMAI	GTCTC	3 cut(s)	402, 436, 472
BstMBI	GATC	5 cut(s)	120, 147, 537, 545, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	2 cut(s)	518, 773
BstSLI	GKGCMC	2 cut(s)	45, 375
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	186, 577
BstX2I	RGATCY	2 cut(s)	147, 537
BstYI	RGATCY	2 cut(s)	147, 537
BsuRI	GGCC	2 cut(s)	87, 685
BtsCI	GGATG	1 cut(s)	443
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	3 cut(s)	373, 467, 796
BveI	ACCTGC	3 cut(s)	490, 652, 780
Cac8I	GCNNGC	5 cut(s)	99, 361, 576, 727, 731
CfoI	GCGC	1 cut(s)	758
Cfr10I	RCCGGY	2 cut(s)	97, 586
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	2 cut(s)	27, 379
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	4 cut(s)	108, 144, 213, 748
DpnI	GATC	5 cut(s)	122, 149, 539, 547, 630
DpnII	GATC	5 cut(s)	120, 147, 537, 545, 628
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	2, 54
EarI	CTCTTC	2 cut(s)	2, 54
Eco31I	GGTCTC	2 cut(s)	402, 472
Eco47III	AGCGCT	1 cut(s)	757
EcoRI	GAATTC	2 cut(s)	268, 778
FaeI	CATG	2 cut(s)	30, 382
FaiI	YATR	5 cut(s)	28, 264, 380, 418, 692
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	26, 378
Fnu4HI	GCNGC	3 cut(s)	85, 175, 591
FokI	GGATG	1 cut(s)	450
Fsp4HI	GCNGC	3 cut(s)	85, 175, 591
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	3 cut(s)	85, 175, 591
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	2 cut(s)	87, 685
HapII	CCGG	5 cut(s)	98, 155, 401, 587, 682
HhaI	GCGC	1 cut(s)	758
Hin1II	CATG	2 cut(s)	30, 382
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HinfI	GANTC	2 cut(s)	211, 219
HpaII	CCGG	5 cut(s)	98, 155, 401, 587, 682
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	276, 373
Hpy188I	TCNGA	3 cut(s)	145, 199, 722
Hpy188III	TCNNGA	4 cut(s)	208, 707, 750, 813
Hpy8I	GTNNAC	2 cut(s)	276, 373
HpyAV	CCTTC	1 cut(s)	606
HpyCH4III	ACNGT	2 cut(s)	241, 557
HpyCH4V	TGCA	9 cut(s)	310, 323, 373, 378, 449, 520, 593, 647, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	4 cut(s)	108, 144, 213, 748
Hsp92II	CATG	2 cut(s)	30, 382
HspAI	GCGC	1 cut(s)	756
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	120, 147, 537, 545, 628
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	2 cut(s)	186, 577
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	5 cut(s)	122, 149, 539, 547, 630
MboI	GATC	5 cut(s)	120, 147, 537, 545, 628
MboII	GAAGA	2 cut(s)	19, 71
MflI	RGATCY	2 cut(s)	147, 537
MhlI	GDGCHC	2 cut(s)	45, 375
MluCI	AATT	7 cut(s)	268, 303, 311, 329, 491, 505, 778
MlyI	GAGTC	1 cut(s)	205
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	2 cut(s)	494, 651
MspI	CCGG	5 cut(s)	98, 155, 401, 587, 682
MspR9I	CCNGG	1 cut(s)	682
Mva1269I	GAATGC	1 cut(s)	99
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	764
NaeI	GCCGGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	682
NdeII	GATC	5 cut(s)	120, 147, 537, 545, 628
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	30, 382
NlaIV	GGNNCC	2 cut(s)	243, 724
NspI	RCATGY	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	86, 176, 592
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	243, 724
PstI	CTGCAG	2 cut(s)	522, 777
PsuI	RGATCY	2 cut(s)	147, 537
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SaqAI	TTAA	2 cut(s)	494, 651
SatI	GCNGC	3 cut(s)	85, 175, 591
Sau3AI	GATC	5 cut(s)	120, 147, 537, 545, 628
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	2 cut(s)	45, 375
SfcI	CTRYAG	2 cut(s)	518, 773
SmlI	CTYRAG	2 cut(s)	206, 705
SmoI	CTYRAG	2 cut(s)	206, 705
Sse9I	AATT	7 cut(s)	268, 303, 311, 329, 491, 505, 778
SsiI	CCGC	2 cut(s)	84, 101
StyD4I	CCNGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	241, 557
TaqI	TCGA	3 cut(s)	91, 119, 431
TasI	AATT	7 cut(s)	268, 303, 311, 329, 491, 505, 778
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	494, 651
Tru9I	TTAA	2 cut(s)	494, 651
TscAI	CASTG	3 cut(s)	380, 467, 796
TseI	GCWGC	2 cut(s)	174, 590
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	2 cut(s)	129, 490
TspRI	CASTG	3 cut(s)	380, 467, 796
VneI	GTGCAC	1 cut(s)	371
XapI	RAATTY	3 cut(s)	268, 303, 778
XceI	RCATGY	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.