Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Reverse (-)

13636817 .. 13640593

Gene Structure 3777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGGAAGAGGGAGAGGGAGAATCCATGTGGGGTTTGTGGCCACTATCACAAATACGAGGAGGGAGAGGTCTGTGGCATCTGCGGCCACCGTGTTCCGGCTGTTTCCGAGAAAACGGCGATCCAAGTTAGCGCCTTTCCGTCCGAGATCCTGCCGGAGTTTCTCTACTTGGGCAGCTACGACAACGCCTCTCGCTCCGAGCTTCTCAAGACTCAGGGAATCTCTCGTGTTCTCAACACGGTACCTACTTGTCAAAATCTTTACAAGAACTCTTTCACCTACCATTACCTTCAAGATGACAAAACCTTGCAATTTGAGGATGCAAACCAATTTTTAGAGAAATGTGAAAGGGATAAAGCTCGTGTTTTAGTGCACTGCATGTCAGGAAAAAATAGGTCCCCAGCCATCGTAATAGCTTATTTGATGAAATCGAGAGGATGGAGACTAGCACAGGCTTATCAGTGGGTCAAAGAACGAAGACCAGCTGTTGAATTAACTGAAGCTGTTTATCGGCAACTACAGGAGTATGAGGAGAAGATCTTTGGGTCAATTGACAGTACCAACCAAACGTTGGCAGCCTTCCCGCCAGTAGCTGCACCTTCATTTGGCTTTGGTTTCCCCAAAGCTAGTGATGGAGTTCCTATCCCTGCATTCAACAATGTGGGCACTCCCTCCATTTTTGCTAGACCCACCTTAGATATCCCTCCACAGGAGTTTACATTTGGAGCTGGCCAGACTCAAAGTAATATCTCAGGAAGCCCTTTTACTGCCAGTCCTCCAAATCCAAATGCTACTGATATTTCTATGGATAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

272

Amino Acids

30.3

Weight (kDa)

6.53

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	55 - 178	4.2e-27	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	2 cut(s)	84, 584
AclI	AACGTT	1 cut(s)	569
AclWI	GGATC	2 cut(s)	115, 142
AcoI	YGGCCR	3 cut(s)	40, 85, 730
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	3 cut(s)	243, 559, 814
AfiI	CCNNNNNNNGG	4 cut(s)	97, 571, 605, 709
AgsI	TTSAA	3 cut(s)	293, 491, 655
AluBI	AGCT	9 cut(s)	177, 202, 359, 416, 485, 503, 593, 626, 728
AluI	AGCT	9 cut(s)	177, 202, 359, 416, 485, 503, 593, 626, 728
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	436
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	115, 142
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	3 cut(s)	40, 85, 730
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	174, 575, 593
Asp700I	GAANNNNTTC	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	2 cut(s)	375, 668
BalI	TGGCCA	2 cut(s)	42, 732
BanI	GGYRCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	748, 780
BauI	CACGAG	2 cut(s)	225, 360
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	186, 580, 587
BccI	CCATC	3 cut(s)	413, 432, 626
BceAI	ACGGC	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	3 cut(s)	446, 627, 684
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	135
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	4 cut(s)	85, 175, 576, 594
BlsI	GCNGC	4 cut(s)	86, 176, 577, 595
BmcAI	AGTACT	1 cut(s)	814
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	243, 398
BmsI	GCATC	2 cut(s)	87, 310
BpiI	GAAGAC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 571, 605, 709
Bse1I	ACTGG	2 cut(s)	587, 771
BseGI	GGATG	2 cut(s)	325, 443
BseLI	CCNNNNNNNGG	4 cut(s)	97, 571, 605, 709
BseMII	CTCAG	2 cut(s)	227, 765
BseNI	ACTGG	2 cut(s)	587, 771
BseRI	GAGGAG	2 cut(s)	74, 545
BseSI	GKGCMC	2 cut(s)	375, 668
BseXI	GCAGC	3 cut(s)	186, 580, 587
BseYI	CCCAGC	1 cut(s)	400
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	3 cut(s)	42, 87, 732
BshNI	GGYRCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	98, 155
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	4 cut(s)	97, 571, 605, 709
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	42, 87, 732
Bsp1286I	GDGCHC	2 cut(s)	375, 668
Bsp143I	GATC	3 cut(s)	120, 147, 537
BspACI	CCGC	2 cut(s)	84, 584
BspANI	GGCC	3 cut(s)	42, 87, 732
BspCNI	CTCAG	2 cut(s)	226, 764
BspLI	GGNNCC	2 cut(s)	243, 398
BspPI	GGATC	2 cut(s)	115, 142
BspT107I	GGYRCC	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	587, 771
BssMI	GATC	3 cut(s)	120, 147, 537
BssSI	CACGAG	2 cut(s)	225, 360
Bst2BI	CACGAG	2 cut(s)	225, 360
Bst4CI	ACNGT	3 cut(s)	92, 241, 557
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	3 cut(s)	213, 694, 751
BstF5I	GGATG	2 cut(s)	325, 443
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	123, 150, 540
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	3 cut(s)	120, 147, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	2 cut(s)	375, 668
BstV1I	GCAGC	3 cut(s)	186, 580, 587
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	2 cut(s)	147, 537
BstYI	RGATCY	2 cut(s)	147, 537
BsuRI	GGCC	3 cut(s)	42, 87, 732
BtsCI	GGATG	2 cut(s)	325, 443
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	373, 467
Cac8I	GCNNGC	1 cut(s)	730
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	3 cut(s)	242, 558, 813
CviAII	CATG	2 cut(s)	27, 379
CviQI	GTAC	3 cut(s)	242, 558, 813
DdeI	CTNAG	3 cut(s)	213, 694, 751
DpnI	GATC	3 cut(s)	122, 149, 539
DpnII	GATC	3 cut(s)	120, 147, 537
EaeI	YGGCCR	3 cut(s)	40, 85, 730
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	700
FaeI	CATG	2 cut(s)	30, 382
FaiI	YATR	4 cut(s)	28, 380, 528, 806
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	26, 378
FauI	CCCGC	1 cut(s)	591
Fnu4HI	GCNGC	4 cut(s)	85, 175, 576, 594
FokI	GGATG	2 cut(s)	332, 450
Fsp4HI	GCNGC	4 cut(s)	85, 175, 576, 594
FspBI	CTAG	3 cut(s)	446, 627, 684
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	4 cut(s)	85, 175, 576, 594
GsaI	CCCAGC	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	42, 87, 732
HapII	CCGG	2 cut(s)	98, 155
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	30, 382
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	4 cut(s)	22, 211, 219, 736
HpaII	CCGG	2 cut(s)	98, 155
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	373, 717
Hpy188I	TCNGA	3 cut(s)	109, 145, 199
Hpy188III	TCNNGA	5 cut(s)	208, 293, 384, 432, 753
Hpy8I	GTNNAC	2 cut(s)	373, 717
HpyAV	CCTTC	3 cut(s)	299, 589, 609
HpyCH4III	ACNGT	3 cut(s)	92, 241, 557
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	6 cut(s)	310, 323, 373, 378, 596, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	3 cut(s)	213, 694, 751
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	2 cut(s)	30, 382
HspAI	GCGC	1 cut(s)	132
KpnI	GGTACC	1 cut(s)	245
Kzo9I	GATC	3 cut(s)	120, 147, 537
LmnI	GCTCC	2 cut(s)	200, 725
Lsp1109I	GCAGC	3 cut(s)	186, 580, 587
LweI	GCATC	2 cut(s)	87, 310
MaeI	CTAG	3 cut(s)	446, 627, 684
MaeII	ACGT	1 cut(s)	569
MalI	GATC	3 cut(s)	122, 149, 539
MboI	GATC	3 cut(s)	120, 147, 537
MboII	GAAGA	3 cut(s)	19, 489, 547
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	147, 537
MhlI	GDGCHC	2 cut(s)	375, 668
MlsI	TGGCCA	2 cut(s)	42, 732
MluCI	AATT	4 cut(s)	311, 329, 491, 549
MluNI	TGGCCA	2 cut(s)	42, 732
MlyI	GAGTC	2 cut(s)	205, 730
Mox20I	TGGCCA	2 cut(s)	42, 732
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	2 cut(s)	42, 732
MseI	TTAA	1 cut(s)	494
Msp20I	TGGCCA	2 cut(s)	42, 732
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	98, 155
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	650
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	3 cut(s)	120, 147, 537
NlaIII	CATG	2 cut(s)	30, 382
NlaIV	GGNNCC	2 cut(s)	243, 398
NspI	RCATGY	1 cut(s)	382
PctI	GAATGC	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	22, 219
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	86, 176, 577, 595
PleI	GAGTC	2 cut(s)	205, 730
PpsI	GAGTC	2 cut(s)	205, 730
PpuMI	RGGWCCY	1 cut(s)	396
Psp1406I	AACGTT	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	243, 398
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	147, 537
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	3 cut(s)	243, 559, 814
RsaNI	GTAC	3 cut(s)	242, 558, 813
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	4 cut(s)	85, 175, 576, 594
Sau3AI	GATC	3 cut(s)	120, 147, 537
Sau96I	GGNCC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	814
SchI	GAGTC	2 cut(s)	205, 730
SduI	GDGCHC	2 cut(s)	375, 668
SfaNI	GCATC	2 cut(s)	87, 310
SfcI	CTRYAG	1 cut(s)	518
SinI	GGWCC	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	311, 329, 491, 549
SsiI	CCGC	2 cut(s)	84, 584
SspMI	CTAG	3 cut(s)	446, 627, 684
TaaI	ACNGT	3 cut(s)	92, 241, 557
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	1 cut(s)	431
TasI	AATT	4 cut(s)	311, 329, 491, 549
TatI	WGTACW	1 cut(s)	812
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	22, 219
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	380, 467
TseI	GCWGC	3 cut(s)	174, 575, 593
TspDTI	ATGAA	2 cut(s)	440, 591
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	380, 467
Van91I	CCANNNNNTGG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	396
XceI	RCATGY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	446, 627, 684
ZrmI	AGTACT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.