Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Reverse (-)

9312423 .. 9316309

Gene Structure 3887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1108600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGGAAGAGGGAGAGGGAGAATCCATGTGGGGTTTGTGGGCACTATCACAAATACGAAGAAGGGGAGGTCTGTGGGGTCTGCGGCCATAGAATGCCGGCGGTTTCTGAGAGAACTTCGATCCAAGTTAGTGCTTTTCCGTCTGAGATCTTGCCGGAGTTCCTCTATTTGGGCAGCTACGATAACGCTTCTCGCTCTGAACTTCTCAAGACTCAGGGAATATCTCGTGTCCTAAATACGGTTCCTGCTTGTCAAAATCTCTACAAGAACTCTTTCACTTATCACTACCTCCAAGATGACAAGATTTTGCAATTTGAGGATGCAAATCAATTTTTAGAGCAATGTGAAAGGGACAAAGCTCGCGTTTTAGTACACTGCATGTCAGGGCAAAAAAGGTCTCCGGCTATTGTAATTGCTTATTTGATGAAGTCTAGAGGATGGAGACTAGCACTGAGTTACCAGTGGGTGAAAGAACGGAGACCAGCTGTTGAATTAACTGAAGCTTATTACCGGCAACTGCAGGAGTATGAGGAAAAGATCTTTGGATCAACTGATAAGAGCAACCCAACCCCACCAGCCTTCCCACCGGCAGCTGCACCTTTGTTTAGCTTTGGCTTCCCAAGATCCAATAATCCAGTTCCCGTCCCTACATTTAACAATGTTGGTGCTACCTCCGTTTTTGCCCGGCCTCCCTTAGCCATTCCTCCTCAAGACTTTACATTCAGGGCCAGCCAGCCTCAAAATAACATCTCAGCAAGCGCTTGCAGTGCAAACCCGCAGAATTCAAACCCCTGTGATATTCCAATGGATGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

273

Amino Acids

30.6

Weight (kDa)

8.04

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	55 - 178	1.1e-25	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccII	CGCG	1 cut(s)	363
AciI	CCGC	3 cut(s)	84, 101, 776
AclWI	GGATC	3 cut(s)	115, 553, 618
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	781
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	1 cut(s)	372
AfeI	AGCGCT	1 cut(s)	760
AfiI	CCNNNNNNNGG	3 cut(s)	169, 238, 809
AgsI	TTSAA	2 cut(s)	491, 786
AjuI	GAANNNNNNNTTGG	3 cut(s)	525, 557, 796
AluBI	AGCT	6 cut(s)	177, 359, 485, 503, 593, 609
AluI	AGCT	6 cut(s)	177, 359, 485, 503, 593, 609
Alw26I	GTCTC	3 cut(s)	402, 436, 472
AlwI	GGATC	3 cut(s)	115, 553, 618
Aor51HI	AGCGCT	1 cut(s)	760
AoxI	GGCC	3 cut(s)	85, 686, 726
ApeKI	GCWGC	3 cut(s)	174, 590, 593
ApoI	RAATTY	1 cut(s)	781
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	726
AsuC2I	CCSGG	1 cut(s)	685
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	186, 580, 602
BccI	CCATC	2 cut(s)	432, 803
BcnI	CCSGG	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	402, 436, 472
BfaI	CTAG	2 cut(s)	432, 446
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	762
BglII	AGATCT	2 cut(s)	147, 537
BisI	GCNGC	4 cut(s)	85, 175, 591, 594
BlsI	GCNGC	4 cut(s)	86, 176, 592, 595
Bme1390I	CCNGG	1 cut(s)	685
BmgT120I	GGNCC	1 cut(s)	726
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	694
BpuEI	CTTGAG	2 cut(s)	191, 693
BpuMI	CCSGG	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	2 cut(s)	402, 472
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 238, 809
Bse118I	RCCGGY	3 cut(s)	97, 510, 586
Bse1I	ACTGG	2 cut(s)	460, 635
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	324
BseGI	GGATG	3 cut(s)	325, 443, 814
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	169, 238, 809
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	5 cut(s)	99, 135, 227, 443, 765
BseNI	ACTGG	2 cut(s)	460, 635
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	186, 580, 602
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	87, 688, 728
BsiSI	CCGG	6 cut(s)	98, 155, 401, 511, 587, 685
BslFI	GGGAC	2 cut(s)	365, 629
BslI	CCNNNNNNNGG	3 cut(s)	169, 238, 809
BsmAI	GTCTC	3 cut(s)	402, 436, 472
BsmFI	GGGAC	2 cut(s)	365, 629
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	87, 688, 728
Bso31I	GGTCTC	2 cut(s)	402, 472
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	120, 147, 537, 545, 623
BspACI	CCGC	3 cut(s)	84, 101, 776
BspANI	GGCC	3 cut(s)	87, 688, 728
BspCNI	CTCAG	5 cut(s)	100, 136, 226, 444, 764
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	3 cut(s)	115, 553, 618
BspTNI	GGTCTC	2 cut(s)	402, 472
BsrDI	GCAATG	1 cut(s)	347
BsrFI	RCCGGY	3 cut(s)	97, 510, 586
BsrI	ACTGG	2 cut(s)	460, 635
BssAI	RCCGGY	3 cut(s)	97, 510, 586
BssMI	GATC	5 cut(s)	120, 147, 537, 545, 623
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	6 cut(s)	99, 361, 730, 734, 757, 763
BstDEI	CTNAG	6 cut(s)	108, 144, 213, 452, 694, 751
BstF5I	GGATG	3 cut(s)	325, 443, 814
BstFNI	CGCG	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	5 cut(s)	123, 150, 540, 548, 626
BstMAI	GTCTC	3 cut(s)	402, 436, 472
BstMBI	GATC	5 cut(s)	120, 147, 537, 545, 623
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	683
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	186, 580, 602
BstX2I	RGATCY	3 cut(s)	147, 537, 623
BstYI	RGATCY	3 cut(s)	147, 537, 623
BsuRI	GGCC	3 cut(s)	87, 688, 728
BtsCI	GGATG	3 cut(s)	325, 443, 814
BtsI	GCAGTG	2 cut(s)	373, 772
BtsIMutI	CAGTG	4 cut(s)	373, 449, 467, 772
Cac8I	GCNNGC	6 cut(s)	99, 361, 730, 734, 757, 763
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	3 cut(s)	97, 510, 586
Cfr13I	GGNCC	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	2 cut(s)	27, 379
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	6 cut(s)	108, 144, 213, 452, 694, 751
DpnI	GATC	5 cut(s)	122, 149, 539, 547, 625
DpnII	GATC	5 cut(s)	120, 147, 537, 545, 623
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco31I	GGTCTC	2 cut(s)	402, 472
Eco47III	AGCGCT	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	781
FaeI	CATG	2 cut(s)	30, 382
FaiI	YATR	4 cut(s)	28, 90, 380, 528
FaqI	GGGAC	2 cut(s)	365, 629
FatI	CATG	2 cut(s)	26, 378
FauI	CCCGC	1 cut(s)	783
Fnu4HI	GCNGC	4 cut(s)	85, 175, 591, 594
FokI	GGATG	2 cut(s)	332, 450
Fsp4HI	GCNGC	4 cut(s)	85, 175, 591, 594
FspBI	CTAG	2 cut(s)	432, 446
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	4 cut(s)	85, 175, 591, 594
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	3 cut(s)	87, 688, 728
HapII	CCGG	6 cut(s)	98, 155, 401, 511, 587, 685
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	2 cut(s)	30, 382
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	2 cut(s)	22, 211
HpaII	CCGG	6 cut(s)	98, 155, 401, 511, 587, 685
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	109, 145, 199
Hpy188III	TCNNGA	4 cut(s)	208, 432, 710, 816
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	56, 589
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	7 cut(s)	310, 323, 378, 520, 596, 765, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	6 cut(s)	108, 144, 213, 452, 694, 751
Hsp92II	CATG	2 cut(s)	30, 382
HspAI	GCGC	1 cut(s)	759
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	120, 147, 537, 545, 623
Lsp1109I	GCAGC	3 cut(s)	186, 580, 602
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	432, 446
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	5 cut(s)	122, 149, 539, 547, 625
MboI	GATC	5 cut(s)	120, 147, 537, 545, 623
MboII	GAAGA	2 cut(s)	19, 71
MflI	RGATCY	3 cut(s)	147, 537, 623
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	311, 329, 411, 491, 781
MlyI	GAGTC	1 cut(s)	205
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	2 cut(s)	494, 654
MspA1I	CMGCKG	2 cut(s)	485, 593
MspI	CCGG	6 cut(s)	98, 155, 401, 511, 587, 685
MspR9I	CCNGG	1 cut(s)	685
Mva1269I	GAATGC	1 cut(s)	99
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	767
NaeI	GCCGGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	685
NdeII	GATC	5 cut(s)	120, 147, 537, 545, 623
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	30, 382
NlaIV	GGNNCC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	382
PctI	GAATGC	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	4 cut(s)	86, 176, 592, 595
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	726
PstI	CTGCAG	1 cut(s)	522
PsuI	RGATCY	3 cut(s)	147, 537, 623
PvuII	CAGCTG	2 cut(s)	485, 593
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	494, 654
SatI	GCNGC	4 cut(s)	85, 175, 591, 594
Sau3AI	GATC	5 cut(s)	120, 147, 537, 545, 623
Sau96I	GGNCC	1 cut(s)	726
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	685
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	206, 708
SmoI	CTYRAG	2 cut(s)	206, 708
Sse9I	AATT	5 cut(s)	311, 329, 411, 491, 781
SsiI	CCGC	3 cut(s)	84, 101, 776
SspMI	CTAG	2 cut(s)	432, 446
StyD4I	CCNGG	1 cut(s)	683
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	119
TasI	AATT	5 cut(s)	311, 329, 411, 491, 781
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	494, 654
Tru9I	TTAA	2 cut(s)	494, 654
TscAI	CASTG	4 cut(s)	380, 456, 467, 772
TseI	GCWGC	3 cut(s)	174, 590, 593
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	3 cut(s)	129, 490, 664
TspRI	CASTG	4 cut(s)	380, 456, 467, 772
Van91I	CCANNNNNTGG	1 cut(s)	809
XapI	RAATTY	1 cut(s)	781
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	2 cut(s)	432, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.