Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Forward (+)

32754524 .. 32758261

Gene Structure 3738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGGAAGAGGGAGAGAGAGAATCCGTGTGGGGTTTGTGGGCACTATCACAAATTCGAGGAGGGAGAGGTCTGCGGGATCTGCGGCCACCGTGTTCCGGCGGTTTCCGAGAAAACCGCGATCCAAGTTAGCGCCTTTCCGTCGGTGATCGTGCCGGAGTTTCTCTATCTGGGCAGCTACGACAACGCCTCTCGCTCCGAGCTTCTCAAGACTCAGGGCATCTCTCGTGTTCTCAATACGGTGCCTACTTGTCAAAATCTCTACAAGAATTCTTTCACCTACCATTACCTTGAAGATGACAAAACTTTGCAGTTTGAGGATGCAAATCAATTTTTAGAGAAATGTGAAAGGGATAAAGCTCGAGTTTTAGTGCACTGCATGTCAGGAAAAAATAGGTCCCCAGCCATTGTAATAGCTTATTTGATGAAATCTAGAGGATGGAGACTAGCACAGGCCTATCAGTGGGTCAAAGAACGAAGACCAGCTGTTGAATTAACTGAAGCTGTTTCCCAGCAACTGCAGGAGTATGAGGAGAAGATCTTTGGGTCAATTGACACCACCAACCAAACGTTGGCCTTCCCTCCGGTAGCTGCACCTTCATTTGGCTTTGGTTTCCCCAAAGCTAATAATGGAGTTCCTATCCCTGCATTCAACAATGTGGGCGCTCCCTCCATTTTTACTAGACCCACCTTAGATATCCCTCCGCAGGAGTTTACATTTGGAGCTGGCCAGACTCAAAGTAATATCTCAGGAAGCCCTTTCAATGTCAATCCTCCAAATCCAAATGCTAGTGATATTTCTATGGATAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

272

Amino Acids

30.16

Weight (kDa)

6.53

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	55 - 178	1.1e-26	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccII	CGCG	1 cut(s)	119
AciI	CCGC	5 cut(s)	75, 84, 101, 117, 704
AclI	AACGTT	1 cut(s)	569
AclWI	GGATC	2 cut(s)	86, 115
AcoI	YGGCCR	2 cut(s)	85, 727
AcsI	RAATTY	2 cut(s)	53, 268
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	5 cut(s)	97, 462, 571, 602, 706
AgsI	TTSAA	4 cut(s)	293, 491, 652, 763
AluBI	AGCT	9 cut(s)	177, 202, 359, 416, 485, 503, 590, 623, 725
AluI	AGCT	9 cut(s)	177, 202, 359, 416, 485, 503, 590, 623, 725
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	436
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	86, 115
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	4 cut(s)	85, 453, 573, 727
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	174, 590
ApoI	RAATTY	2 cut(s)	53, 268
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	134, 665
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	157, 268
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	2 cut(s)	45, 375
BalI	TGGCCA	1 cut(s)	729
BanI	GGYRCC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	186, 577
BccI	CCATC	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	4 cut(s)	432, 446, 681, 789
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	2 cut(s)	135, 666
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	3 cut(s)	85, 175, 591
BlsI	GCNGC	3 cut(s)	86, 176, 592
BmcAI	AGTACT	1 cut(s)	811
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	243, 398
BmsI	GCATC	2 cut(s)	228, 310
BpiI	GAAGAC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 462, 571, 602, 706
Bse8I	GATNNNNATC	1 cut(s)	324
BseGI	GGATG	2 cut(s)	325, 443
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	5 cut(s)	97, 462, 571, 602, 706
BseMII	CTCAG	2 cut(s)	227, 762
BseRI	GAGGAG	2 cut(s)	74, 545
BseSI	GKGCMC	2 cut(s)	45, 375
BseXI	GCAGC	2 cut(s)	186, 577
BseYI	CCCAGC	2 cut(s)	400, 510
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	4 cut(s)	87, 455, 575, 729
BshNI	GGYRCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	98, 155, 584
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	5 cut(s)	97, 462, 571, 602, 706
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	4 cut(s)	87, 455, 575, 729
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	45, 375
Bsp143I	GATC	4 cut(s)	78, 120, 147, 537
BspACI	CCGC	5 cut(s)	75, 84, 101, 117, 704
BspANI	GGCC	4 cut(s)	87, 455, 575, 729
BspCNI	CTCAG	2 cut(s)	226, 761
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	243, 398
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	2 cut(s)	86, 115
BspT107I	GGYRCC	1 cut(s)	241
BssMI	GATC	4 cut(s)	78, 120, 147, 537
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	92, 241
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	3 cut(s)	213, 691, 748
BstF5I	GGATG	2 cut(s)	325, 443
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	2 cut(s)	135, 666
BstHHI	GCGC	2 cut(s)	134, 665
BstKTI	GATC	4 cut(s)	81, 123, 150, 540
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	4 cut(s)	78, 120, 147, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	2 cut(s)	45, 375
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	186, 577
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	2 cut(s)	78, 537
BstYI	RGATCY	2 cut(s)	78, 537
BsuRI	GGCC	4 cut(s)	87, 455, 575, 729
BtsCI	GGATG	2 cut(s)	325, 443
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	373, 467
Cac8I	GCNNGC	1 cut(s)	727
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	2 cut(s)	134, 665
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	810
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	3 cut(s)	213, 691, 748
DpnI	GATC	4 cut(s)	80, 122, 149, 539
DpnII	GATC	4 cut(s)	78, 120, 147, 537
EaeI	YGGCCR	2 cut(s)	85, 727
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco147I	AGGCCT	1 cut(s)	455
Eco32I	GATATC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	268
EcoRV	GATATC	1 cut(s)	697
FaeI	CATG	1 cut(s)	382
FaiI	YATR	3 cut(s)	380, 528, 803
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	85, 175, 591
FokI	GGATG	2 cut(s)	332, 450
Fsp4HI	GCNGC	3 cut(s)	85, 175, 591
FspBI	CTAG	4 cut(s)	432, 446, 681, 789
GlaI	GCGC	2 cut(s)	133, 664
GluI	GCNGC	3 cut(s)	85, 175, 591
GsaI	CCCAGC	2 cut(s)	404, 514
HaeII	RGCGCY	2 cut(s)	135, 666
HaeIII	GGCC	4 cut(s)	87, 455, 575, 729
HapII	CCGG	3 cut(s)	98, 155, 584
HhaI	GCGC	2 cut(s)	134, 665
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	2 cut(s)	132, 663
HinP1I	GCGC	2 cut(s)	132, 663
HinfI	GANTC	3 cut(s)	22, 211, 733
HpaII	CCGG	3 cut(s)	98, 155, 584
HphI	GGTGA	2 cut(s)	157, 268
Hpy166II	GTNNAC	2 cut(s)	373, 714
Hpy188I	TCNGA	2 cut(s)	109, 199
Hpy188III	TCNNGA	4 cut(s)	208, 384, 432, 750
Hpy8I	GTNNAC	2 cut(s)	373, 714
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	586, 606
HpyCH4III	ACNGT	2 cut(s)	92, 241
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	7 cut(s)	310, 323, 373, 378, 520, 593, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	3 cut(s)	213, 691, 748
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	2 cut(s)	132, 663
Kzo9I	GATC	4 cut(s)	78, 120, 147, 537
LmnI	GCTCC	3 cut(s)	200, 670, 722
Lsp1109I	GCAGC	2 cut(s)	186, 577
LweI	GCATC	2 cut(s)	228, 310
MaeI	CTAG	4 cut(s)	432, 446, 681, 789
MaeII	ACGT	1 cut(s)	569
MalI	GATC	4 cut(s)	80, 122, 149, 539
MboI	GATC	4 cut(s)	78, 120, 147, 537
MboII	GAAGA	4 cut(s)	19, 305, 489, 547
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	78, 537
MhlI	GDGCHC	2 cut(s)	45, 375
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	5 cut(s)	53, 268, 329, 491, 549
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	2 cut(s)	205, 727
Mox20I	TGGCCA	1 cut(s)	729
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	3 cut(s)	98, 155, 584
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	647
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	4 cut(s)	78, 120, 147, 537
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	243, 398
NspI	RCATGY	1 cut(s)	382
PaeR7I	CTCGAG	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	455
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	3 cut(s)	86, 176, 592
PleI	GAGTC	2 cut(s)	205, 727
PpsI	GAGTC	2 cut(s)	205, 727
PpuMI	RGGWCCY	1 cut(s)	396
Psp1406I	AACGTT	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	396
PspFI	CCCAGC	2 cut(s)	400, 510
PspN4I	GGNNCC	2 cut(s)	243, 398
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
PspXI	VCTCGAGB	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	78, 537
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	3 cut(s)	85, 175, 591
Sau3AI	GATC	4 cut(s)	78, 120, 147, 537
Sau96I	GGNCC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	811
SchI	GAGTC	2 cut(s)	205, 727
SduI	GDGCHC	2 cut(s)	45, 375
SfaNI	GCATC	2 cut(s)	228, 310
SfcI	CTRYAG	1 cut(s)	518
Sfr274I	CTCGAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	396
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	206, 360
SmoI	CTYRAG	2 cut(s)	206, 360
Sse9I	AATT	5 cut(s)	53, 268, 329, 491, 549
SseBI	AGGCCT	1 cut(s)	455
SsiI	CCGC	5 cut(s)	75, 84, 101, 117, 704
SspMI	CTAG	4 cut(s)	432, 446, 681, 789
StuI	AGGCCT	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	92, 241
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	2 cut(s)	57, 361
TasI	AATT	5 cut(s)	53, 268, 329, 491, 549
TatI	WGTACW	1 cut(s)	809
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	380, 467
TseI	GCWGC	2 cut(s)	174, 590
TspDTI	ATGAA	2 cut(s)	440, 588
TspGWI	ACGGA	2 cut(s)	15, 129
TspRI	CASTG	2 cut(s)	380, 467
Van91I	CCANNNNNTGG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	2 cut(s)	53, 268
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XhoI	CTCGAG	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	4 cut(s)	432, 446, 681, 789
ZrmI	AGTACT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.