AT2G04650

ADP-glucose pyrophosphorylase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012792
Physical Location & Seq
Reverse (-)
1621749 .. 1624647
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04650.2

Sequence Viewer

Length: 1221 bp
ATGTCGGAGGAGAAAGTCGTCGCTGTGATCATGGTTGGTGGTCCGACCAAAGGAACTCGATTTCGCCCGTTATCGTTCAATACACCGAAACCATTGATTCCTTTGGCTGGTCAACCTATGATTCATCATCCTATCTCTGCTTGTAAAAAGATATCAAATCTGGCTCAGATTTTTCTGATTGGATTTTACGAGGAACGAGAATTTGCTTTGTATGTGTCTTCAATATCTAACGAGCTGAAAATTCCAGTGCGATACTTGAAAGAAGATAAACCCCATGGTTCAGCTGGTGCTCTTTATTACTTTCGTGATAGAATTATGGAAGAGAAACCGTCACATGTTTTCCTCCTCAACTGTGATGTTTGCTGTTCTTTCCCTCTTCAAGGCATACTTGACGCACATCGAAGATATGGTGGTATTGGAACTATGCTAGTAATCAAGGTTTCTGCAGAAGCAGCTAGCCAATTTGGTGAATTGATAGCTGATCCTGATACTAAAGAACTCCTGCATTATACAGAGAAGCCCGAGACTTTCGTCAGTGACTTGATAAACTGTGGTGTCTATGTGTTTACTTCAGATATCTTCAATGCAATTGAAGAAGTATATAGCCAAATAAGAGACACATCTAGCAACTACCAATCCGCTACAAGGTCTGTTCCTGCAGATTTTGTGAGATTAGATCAAGATATATTGTCACCTCTTGCTGGAAAGAAGCAACTATACACATATGAGAACAAGGATTTCTGGGAACAGATCAAGACTCCGGGGAAATCTTTGAAATGCTCGGCTTTATATCTTTCCCAATTCCGCGAAACATCGCCTCATATTTTAGCTTCAGGAGATGGTACTAATAGGAAACCAACTATAATTGGTGATGTTTATATTCACCCATCCGTAAAACTGCATCCAACCGCAAAGATCGGTCCAAATGTGTCGATATCAGCAAATGTTCGTGTTGGACCTGGTGTAAGGCTTATTAGCTGCATAATCTTAGACGATGTTGAAATCAAGGAGAATGCTGTTGTTATAAACTCAATTATCGGATGGAAATCTTCTATAGGTAGATGGTCAAGAGTTCAAGCTAGTGGAGATTACAATGACAGGCTTGGGATTACCATTCTTGGTGAGGCTGTAACTGTGGAAGATGAAGTAGCAGTCATAGGAAGCATTGTTCTCCAGAATAAGACTCTTAATGTTAGTGTTCAAGATGATATCATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

406

Amino Acids

44.94

Weight (kDa)

6.17

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 4 - 197 2.8e-30 Nucleotidyl transferase
GMPPB_C PF25087 276 - 391 5.2e-35 GMPPB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04650 AT2G04650
fragaria_vesca FvH4_6g49920
malus_domestica MD09G1040800.v1.1 MD17G1042000.v1.1
prunus_persica Prupe.3G276900_v2.0.a1 Prupe.3G276900_v2.0.a1
pyrus_communis pycom111g03180 pycom17g03750
rosa_chinensis RchiOBHm_Chr2g0170091
rosa_laevigata RLG00000021921
rosa_multiflora Rmu_sc0013453.1_g000005
rosa_roxburghii Rroxscaffold_2G00081590
rosa_rugosa Rorug02G0545700.1
rosa_samantha Rh2AG617800 Rh2BG629300 Rh2DG641100
rosa_wichuraiana Rw2G051150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1025
AccII CGCG 1 cut(s) 807
AciI CCGC 3 cut(s) 639, 805, 909
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 2 cut(s) 200, 240
AcuI CTGAAG 2 cut(s) 555, 816
AfaI GTAC 1 cut(s) 844
AfiI CCNNNNNNNGG 5 cut(s) 50, 107, 380, 645, 701
AflIII ACRYGT 1 cut(s) 334
AjnI CCWGG 1 cut(s) 958
AloI GAACNNNNNNTCC 2 cut(s) 1152, 1184
AluBI AGCT 7 cut(s) 235, 284, 455, 479, 830, 978, 1079
AluI AGCT 7 cut(s) 235, 284, 455, 479, 830, 978, 1079
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 518, 609
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 452, 978
ApoI RAATTY 2 cut(s) 200, 240
AspS9I GGNCC 3 cut(s) 41, 920, 956
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 5 cut(s) 479, 684, 875, 881, 1133
AsuNHI GCTAGC 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 3 cut(s) 41, 920, 956
BarI GAAGNNNNNNTAC 2 cut(s) 701, 733
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 464, 965
BccI CCATC 4 cut(s) 833, 895, 1035, 1056
BciT130I CCWGG 1 cut(s) 960
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 518, 609
BfaI CTAG 4 cut(s) 428, 456, 624, 1080
BfmI CTRYAG 3 cut(s) 444, 657, 1053
BisI GCNGC 2 cut(s) 453, 979
BlsI GCNGC 2 cut(s) 454, 980
Bme1390I CCNGG 2 cut(s) 762, 960
Bme18I GGWCC 3 cut(s) 41, 920, 956
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 41, 920, 956
BmrFI CCNGG 2 cut(s) 762, 960
BmsI GCATC 1 cut(s) 910
BmtI GCTAGC 1 cut(s) 459
BoxI GACNNNNGTC 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 1157
BpuMI CCSGG 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 1045
BsaJI CCNNGG 2 cut(s) 274, 761
Bsc4I CCNNNNNNNGG 5 cut(s) 50, 107, 380, 645, 701
Bse1I ACTGG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 1045
BseBI CCWGG 1 cut(s) 960
BseDI CCNNGG 2 cut(s) 274, 761
BseGI GGATG 4 cut(s) 127, 887, 901, 1046
BseJI GATNNNNATC 1 cut(s) 1045
BseLI CCNNNNNNNGG 5 cut(s) 50, 107, 380, 645, 701
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 2 cut(s) 23, 335
BseXI GCAGC 2 cut(s) 464, 965
Bsh1236I CGCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 761
BslI CCNNNNNNNGG 5 cut(s) 50, 107, 380, 645, 701
BsmAI GTCTC 2 cut(s) 518, 609
BsmI GAATGC 1 cut(s) 1018
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 5 cut(s) 27, 481, 676, 750, 915
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 3 cut(s) 639, 805, 909
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 1 cut(s) 807
BspMAI CTGCAG 2 cut(s) 448, 661
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 1 cut(s) 476
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 274, 761
BssMI GATC 5 cut(s) 27, 481, 676, 750, 915
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 4 cut(s) 330, 353, 551, 1135
Bst6I CTCTTC 2 cut(s) 315, 381
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 165, 988
BstDSI CCRYGG 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 4 cut(s) 127, 887, 901, 1046
BstFNI CGCG 1 cut(s) 807
BstKTI GATC 5 cut(s) 30, 484, 679, 753, 918
BstMAI GTCTC 2 cut(s) 518, 609
BstMBI GATC 5 cut(s) 27, 481, 676, 750, 915
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 1 cut(s) 338
BstPAI GACNNNNGTC 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 760, 958
BstSFI CTRYAG 3 cut(s) 444, 657, 1053
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 2 cut(s) 464, 965
BstV2I GAAGAC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 798
BtsCI GGATG 4 cut(s) 127, 887, 901, 1046
BtsIMutI CAGTG 2 cut(s) 252, 541
Cac8I GCNNGC 1 cut(s) 457
Cfr13I GGNCC 3 cut(s) 41, 920, 956
CseI GACGC 1 cut(s) 401
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 1 cut(s) 843
CviAII CATG 3 cut(s) 31, 275, 335
CviQI GTAC 1 cut(s) 843
DdeI CTNAG 2 cut(s) 165, 988
DpnI GATC 5 cut(s) 29, 483, 678, 752, 917
DpnII GATC 5 cut(s) 27, 481, 676, 750, 915
Eam1104I CTCTTC 2 cut(s) 315, 381
EarI CTCTTC 2 cut(s) 315, 381
Eco130I CCWWGG 1 cut(s) 274
Eco32I GATATC 4 cut(s) 153, 577, 936, 1210
Eco47I GGWCC 3 cut(s) 41, 920, 956
Eco57I CTGAAG 2 cut(s) 555, 816
Eco88I CYCGRG 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 958
EcoRV GATATC 4 cut(s) 153, 577, 936, 1210
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 34, 278, 338
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 3 cut(s) 30, 274, 334
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 453, 979
FokI GGATG 4 cut(s) 114, 874, 888, 1053
Fsp4HI GCNGC 2 cut(s) 453, 979
FspBI CTAG 4 cut(s) 428, 456, 624, 1080
GluI GCNGC 2 cut(s) 453, 979
GsuI CTGGAG 1 cut(s) 1157
HapII CCGG 1 cut(s) 761
HgaI GACGC 1 cut(s) 401
Hin1II CATG 3 cut(s) 34, 278, 338
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 4 cut(s) 97, 121, 757, 1183
HpaII CCGG 1 cut(s) 761
HphI GGTGA 5 cut(s) 479, 684, 875, 881, 1133
Hpy166II GTNNAC 2 cut(s) 113, 567
Hpy188I TCNGA 6 cut(s) 7, 45, 168, 177, 574, 1040
Hpy188III TCNNGA 8 cut(s) 305, 485, 680, 754, 834, 1068, 1174, 1202
Hpy8I GTNNAC 2 cut(s) 113, 567
Hpy99I CGWCG 1 cut(s) 23
HpyCH4III ACNGT 4 cut(s) 330, 353, 551, 1135
HpyCH4V TGCA 6 cut(s) 446, 505, 587, 659, 901, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 2 cut(s) 165, 988
Hsp92II CATG 3 cut(s) 34, 278, 338
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 5 cut(s) 27, 481, 676, 750, 915
Lsp1109I GCAGC 2 cut(s) 464, 965
LweI GCATC 1 cut(s) 910
MabI ACCWGGT 1 cut(s) 958
MaeI CTAG 4 cut(s) 428, 456, 624, 1080
MaeIII GTNAC 4 cut(s) 330, 536, 690, 1129
MalI GATC 5 cut(s) 29, 483, 678, 752, 917
MboI GATC 5 cut(s) 27, 481, 676, 750, 915
MboII GAAGA 9 cut(s) 210, 275, 332, 368, 414, 571, 605, 1041, 1151
MfeI CAATTG 1 cut(s) 588
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 9 cut(s) 200, 240, 312, 461, 470, 588, 800, 864, 1032
MlyI GAGTC 2 cut(s) 751, 1177
MmeI TCCRAC 3 cut(s) 68, 929, 934
MnlI CCTC 7 cut(s) 184, 353, 356, 384, 705, 828, 1117
MseI TTAA 1 cut(s) 1188
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 761
MspR9I CCNGG 2 cut(s) 762, 960
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 1018
MvaI CCWGG 1 cut(s) 960
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 1 cut(s) 452
NciI CCSGG 1 cut(s) 762
NcoI CCATGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 724
NdeII GATC 5 cut(s) 27, 481, 676, 750, 915
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 3 cut(s) 34, 278, 338
NmeAIII GCCGAG 1 cut(s) 761
NmuCI GTSAC 3 cut(s) 330, 536, 690
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PctI GAATGC 1 cut(s) 1018
PfeI GAWTC 2 cut(s) 97, 121
PkrI GCNGC 2 cut(s) 454, 980
PleI GAGTC 2 cut(s) 751, 1177
PpsI GAGTC 2 cut(s) 751, 1177
PscI ACATGT 1 cut(s) 334
PshAI GACNNNNGTC 1 cut(s) 530
PsiI TTATAA 1 cut(s) 1025
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspPI GGNCC 3 cut(s) 41, 920, 956
PstI CTGCAG 2 cut(s) 448, 661
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 844
RsaNI GTAC 1 cut(s) 843
SaqAI TTAA 1 cut(s) 1188
SatI GCNGC 2 cut(s) 453, 979
Sau3AI GATC 5 cut(s) 27, 481, 676, 750, 915
Sau96I GGNCC 3 cut(s) 41, 920, 956
SchI GAGTC 2 cut(s) 751, 1177
ScrFI CCNGG 2 cut(s) 762, 960
SduI GDGCHC 1 cut(s) 292
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 1 cut(s) 910
SfcI CTRYAG 3 cut(s) 444, 657, 1053
SinI GGWCC 3 cut(s) 41, 920, 956
Sse9I AATT 9 cut(s) 200, 240, 312, 461, 470, 588, 800, 864, 1032
SsiI CCGC 3 cut(s) 639, 805, 909
SspMI CTAG 4 cut(s) 428, 456, 624, 1080
StyD4I CCNGG 2 cut(s) 760, 958
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 4 cut(s) 330, 353, 551, 1135
TaqI TCGA 3 cut(s) 58, 400, 932
TaqII GACCGA 1 cut(s) 908
TasI AATT 9 cut(s) 200, 240, 312, 461, 470, 588, 800, 864, 1032
TfiI GAWTC 2 cut(s) 97, 121
Tru1I TTAA 1 cut(s) 1188
Tru9I TTAA 1 cut(s) 1188
TscAI CASTG 2 cut(s) 252, 541
TseFI GTSAC 3 cut(s) 330, 536, 690
TseI GCWGC 2 cut(s) 452, 978
Tsp45I GTSAC 3 cut(s) 330, 536, 690
TspDTI ATGAA 2 cut(s) 113, 1158
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 2 cut(s) 252, 541
VpaK11BI GGWCC 3 cut(s) 41, 920, 956
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 2 cut(s) 200, 240
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 4 cut(s) 428, 456, 624, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.