Prupe.3G276900_v2.0.a1

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012792
Physical Location & Seq
Reverse (-)
25464566 .. 25468289
3724 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G276900.1

Sequence Viewer

Length: 1239 bp
ATGGAGGAGAAGGTAGTCGCTGTAATCATGGTGGGCGGGCCAACCAAAGGCACTAGATTTCGGCCTCTTTCATTCAACACTCCGAAACCGCTGTTCCCATTGGCTGGGCAAGCTATGGTGCACCATCCCATTTCAGCTTGTAAAAGGATACCGAATTTGGCTCAAATCTTTTTAGTTGGATTCTATGAAGAGCGGGAATTCGCACTGTATGTGTCTTCCATCTCCAATGAGCTCAAAGTACCAGTGAGGTACTTGAGAGAGGACAAGCCGCATGGCTCTGCCGGTGGCCTTTATTACTACAGAGATATTATCATGGAAGACAGCCCGTCGTATATCTTTTTGCTGAATTGTGATGTTTGCTGCAGTTTTCCACTACCAGACATGCTTGAGGCTCATAAAGGATATGGTGGGATGGGTACAATGTTAGTAATCAAGGTTTCTGCTGAATCTGCCAACCAGTTTGGGGAGTTGGTTGCTGATCCAACCACCAAAGAACTTTTGCATTACACCGAGAAACCAGAGACTTTTGTGAGTGATTTGATAAACTGTGGTGTTTATGTATTTACCCCAGACATTTTTACTGCCATTCAAGATGTCTCCACTCACCGAGAGGGCAGAGCTAATTTACGTCGTATCTCCAGCTTTGAAGCCCTCCAGTCTGCAACAAGGACTCTTCCTACAGATTTTGTCAGATTGGATCAAGATATTTTGTCACCACTTGCTGGAAAGAAGCAACTCTATACATATGAGACCATGGATTTCTGGGAACAGATAAAGACGCCAGGAATGTCTTTGAAGTGTTCGGGTTTGTATCTTTCTCAATTCCGAATTAACTCTGCACATCTTTTAGCTAGTGGAGATGGTACAAAGAATGCCACAGTTGTTGGTAATGTTTATGTTCATCCTTCAGCAAAAGTGCATCCAACTGCTAAGATTGGTCCCAACGTCTCTCTTTCAGCAAATGTTCGCGTAGGTGCAGGGGTAAGGCTTATAAGTTGCATTGTCTTGGATGACGTGGAAATCAAGGAAAATGCAGTTGTTATACATGCTATTGTTGGATGGAAGTCGTCTATTGGCAAATGGTCGCGTGTCCAGGCTGACGGAGACTACAATGCAAAACTTGGAATCACAATCCTTGGAGAAGAGGTGACTGTTGAAGACGAAGTTGTGGTGATTAACAGCATTGTTCTCCCAAATAAGATTCTTAATGTTAGCGTACAAGAGGAAATCATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

413

Amino Acids

45.41

Weight (kDa)

5.96

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04650 AT2G04650
fragaria_vesca FvH4_6g49920
malus_domestica MD09G1040800.v1.1 MD17G1042000.v1.1
prunus_persica Prupe.3G276900_v2.0.a1 Prupe.3G276900_v2.0.a1
pyrus_communis pycom111g03180 pycom17g03750
rosa_chinensis RchiOBHm_Chr2g0170091
rosa_laevigata RLG00000021921
rosa_multiflora Rmu_sc0013453.1_g000005
rosa_roxburghii Rroxscaffold_2G00081590
rosa_rugosa Rorug02G0545700.1
rosa_samantha Rh2AG617800 Rh2BG629300 Rh2DG641100
rosa_wichuraiana Rw2G051150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 992
AccB7I CCANNNNNTGG 2 cut(s) 104, 722
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 2 cut(s) 969, 1087
AciI CCGC 4 cut(s) 36, 89, 193, 269
AclWI GGATC 2 cut(s) 473, 705
AcsI RAATTY 2 cut(s) 154, 197
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 5 cut(s) 240, 251, 418, 865, 1218
AfiI CCNNNNNNNGG 4 cut(s) 47, 104, 463, 722
AgsI TTSAA 5 cut(s) 76, 590, 647, 796, 1157
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 1 cut(s) 1015
AjnI CCWGG 2 cut(s) 781, 1092
AluBI AGCT 6 cut(s) 113, 137, 232, 620, 642, 851
AluI AGCT 6 cut(s) 113, 137, 232, 620, 642, 851
Alw21I GWGCWC 2 cut(s) 123, 234
Alw26I GTCTC 5 cut(s) 515, 601, 743, 952, 1098
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 2 cut(s) 473, 705
AoxI GGCC 3 cut(s) 38, 62, 286
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 2 cut(s) 154, 197
AspS9I GGNCC 2 cut(s) 38, 938
AsuHPI GGTGA 4 cut(s) 596, 705, 1159, 1183
AvaII GGWCC 1 cut(s) 938
BaeGI GKGCMC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 3 cut(s) 207, 324, 1164
Bbv12I GWGCWC 2 cut(s) 123, 234
BbvI GCAGC 1 cut(s) 347
BccI CCATC 5 cut(s) 132, 227, 406, 854, 1053
BciT130I CCWGG 2 cut(s) 783, 1094
BciVI GTATCC 1 cut(s) 141
BcoDI GTCTC 5 cut(s) 515, 601, 743, 952, 1098
BfaI CTAG 2 cut(s) 54, 852
BfmI CTRYAG 3 cut(s) 298, 361, 678
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 2 cut(s) 269, 361
BlsI GCNGC 2 cut(s) 270, 362
Bme1390I CCNGG 2 cut(s) 783, 1094
Bme18I GGWCC 1 cut(s) 938
BmeRI GACNNNNNGTC 1 cut(s) 325
BmgBI CACGTC 1 cut(s) 1015
BmgT120I GGNCC 2 cut(s) 38, 938
BmiI GGNNCC 1 cut(s) 940
BmrFI CCNGG 2 cut(s) 783, 1094
BmsI GCATC 1 cut(s) 928
BpiI GAAGAC 3 cut(s) 207, 324, 1164
BpmI CTGGAG 2 cut(s) 622, 638
BpuEI CTTGAG 2 cut(s) 274, 407
BsaHI GRCGYC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 2 cut(s) 753, 1135
BsaXI ACNNNNNCTCC 2 cut(s) 1131, 1161
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 104, 463, 722
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 3 cut(s) 242, 457, 655
BseBI CCWGG 2 cut(s) 783, 1094
BseDI CCNNGG 2 cut(s) 753, 1135
BseGI GGATG 6 cut(s) 124, 417, 901, 919, 1015, 1064
BseLI CCNNNNNNNGG 4 cut(s) 47, 104, 463, 722
BseNI ACTGG 3 cut(s) 242, 457, 655
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 1 cut(s) 347
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 2 cut(s) 822, 996
Bsh1236I CGCG 2 cut(s) 969, 1087
BshFI GGCC 3 cut(s) 40, 64, 288
BsiHKAI GWGCWC 2 cut(s) 123, 234
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 4 cut(s) 47, 104, 463, 722
BsmAI GTCTC 5 cut(s) 515, 601, 743, 952, 1098
BsmBI CGTCTC 1 cut(s) 952
BsmFI GGGAC 1 cut(s) 924
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 3 cut(s) 40, 64, 288
Bso31I GGTCTC 1 cut(s) 743
Bsp1286I GDGCHC 2 cut(s) 123, 234
Bsp143I GATC 2 cut(s) 478, 697
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 4 cut(s) 36, 89, 193, 269
BspANI GGCC 3 cut(s) 40, 64, 288
BspFNI CGCG 2 cut(s) 969, 1087
BspLI GGNNCC 1 cut(s) 940
BspMAI CTGCAG 1 cut(s) 365
BspPI GGATC 2 cut(s) 473, 705
BspQI GCTCTTC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 743
BsrBI CCGCTC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 3 cut(s) 242, 457, 655
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 753, 1135
BssMI GATC 2 cut(s) 478, 697
BssNI GRCGYC 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 753, 1135
Bst2UI CCWGG 2 cut(s) 783, 1094
Bst4CI ACNGT 4 cut(s) 207, 548, 880, 1153
Bst6I CTCTTC 3 cut(s) 183, 678, 1137
BstACI GRCGYC 1 cut(s) 779
BstC8I GCNNGC 2 cut(s) 38, 111
BstDEI CTNAG 1 cut(s) 930
BstDSI CCRYGG 1 cut(s) 753
BstF5I GGATG 6 cut(s) 124, 417, 901, 919, 1015, 1064
BstFNI CGCG 2 cut(s) 969, 1087
BstKTI GATC 2 cut(s) 481, 700
BstMAI GTCTC 5 cut(s) 515, 601, 743, 952, 1098
BstMBI GATC 2 cut(s) 478, 697
BstMWI GCNNNNNNNGC 2 cut(s) 110, 449
BstNI CCWGG 2 cut(s) 783, 1094
BstNSI RCATGY 2 cut(s) 385, 1049
BstSCI CCNGG 2 cut(s) 781, 1092
BstSFI CTRYAG 3 cut(s) 298, 361, 678
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 2 cut(s) 969, 1087
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 3 cut(s) 207, 324, 1164
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 3 cut(s) 40, 64, 288
BtgI CCRYGG 1 cut(s) 753
BtrI CACGTC 1 cut(s) 1015
BtsCI GGATG 6 cut(s) 124, 417, 901, 919, 1015, 1064
BtsIMutI CAGTG 2 cut(s) 203, 249
Cac8I GCNNGC 2 cut(s) 38, 111
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 38, 938
CseI GACGC 1 cut(s) 787
Csp6I GTAC 5 cut(s) 239, 250, 417, 864, 1217
CspCI CAANNNNNGTGG 2 cut(s) 865, 900
CviAII CATG 6 cut(s) 28, 272, 313, 382, 754, 1046
CviQI GTAC 5 cut(s) 239, 250, 417, 864, 1217
DdeI CTNAG 1 cut(s) 930
DpnI GATC 2 cut(s) 480, 699
DpnII GATC 2 cut(s) 478, 697
DriI GACNNNNNGTC 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 183, 678, 1137
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 3 cut(s) 183, 678, 1137
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 2 cut(s) 753, 1135
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 938
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 891
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 781, 1092
EcoT14I CCWWGG 2 cut(s) 753, 1135
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 753, 1135
Esp3I CGTCTC 1 cut(s) 952
FaeI CATG 6 cut(s) 31, 275, 316, 385, 757, 1049
FaqI GGGAC 1 cut(s) 924
FatI CATG 6 cut(s) 27, 271, 312, 381, 753, 1045
FauI CCCGC 2 cut(s) 29, 186
FauNDI CATATG 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 269, 361
FokI GGATG 6 cut(s) 111, 424, 888, 906, 1022, 1071
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 269, 361
FspBI CTAG 2 cut(s) 54, 852
GluI GCNGC 2 cut(s) 269, 361
GsaI CCCAGC 1 cut(s) 108
GsuI CTGGAG 2 cut(s) 622, 638
HaeIII GGCC 3 cut(s) 40, 64, 288
HapII CCGG 1 cut(s) 282
HgaI GACGC 1 cut(s) 787
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 6 cut(s) 31, 275, 316, 385, 757, 1049
HinfI GANTC 5 cut(s) 180, 446, 670, 1125, 1201
HpaII CCGG 1 cut(s) 282
HphI GGTGA 4 cut(s) 596, 705, 1159, 1183
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 84, 692, 827
Hpy188III TCNNGA 2 cut(s) 590, 701
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 331, 633
HpyAV CCTTC 2 cut(s) 4, 915
HpyCH4III ACNGT 4 cut(s) 207, 548, 880, 1153
HpyCH4IV ACGT 3 cut(s) 628, 945, 1014
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 449
HpyF3I CTNAG 1 cut(s) 930
HpySE526I ACGT 3 cut(s) 628, 945, 1014
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 6 cut(s) 31, 275, 316, 385, 757, 1049
Kzo9I GATC 2 cut(s) 478, 697
LguI GCTCTTC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 928
MaeI CTAG 2 cut(s) 54, 852
MaeII ACGT 3 cut(s) 628, 945, 1014
MaeIII GTNAC 2 cut(s) 711, 1147
MalI GATC 2 cut(s) 480, 699
MbiI CCGCTC 1 cut(s) 193
MboI GATC 2 cut(s) 478, 697
MboII GAAGA 6 cut(s) 200, 207, 329, 665, 1154, 1169
MhlI GDGCHC 2 cut(s) 123, 234
MluCI AATT 6 cut(s) 154, 197, 346, 622, 821, 828
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 4 cut(s) 157, 506, 947, 1036
MnlI CCTC 8 cut(s) 75, 240, 253, 382, 604, 662, 1138, 1216
MseI TTAA 3 cut(s) 831, 1176, 1206
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 783, 1094
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 2 cut(s) 783, 1094
MvnI CGCG 2 cut(s) 969, 1087
MwoI GCNNNNNNNGC 2 cut(s) 110, 449
NcoI CCATGG 1 cut(s) 753
NdeI CATATG 1 cut(s) 745
NdeII GATC 2 cut(s) 478, 697
NlaIII CATG 6 cut(s) 31, 275, 316, 385, 757, 1049
NlaIV GGNNCC 1 cut(s) 940
NmuCI GTSAC 2 cut(s) 711, 1147
NspI RCATGY 2 cut(s) 385, 1049
PciSI GCTCTTC 1 cut(s) 183
PctI GAATGC 1 cut(s) 877
PfeI GAWTC 4 cut(s) 180, 446, 1125, 1201
PflMI CCANNNNNTGG 2 cut(s) 104, 722
PkrI GCNGC 2 cut(s) 270, 362
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PsiI TTATAA 1 cut(s) 992
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 781, 1092
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 2 cut(s) 781, 1092
PspN4I GGNNCC 1 cut(s) 940
PspPI GGNCC 2 cut(s) 38, 938
PstI CTGCAG 1 cut(s) 365
RsaI GTAC 5 cut(s) 240, 251, 418, 865, 1218
RsaNI GTAC 5 cut(s) 239, 250, 417, 864, 1217
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 831, 1176, 1206
SatI GCNGC 2 cut(s) 269, 361
Sau3AI GATC 2 cut(s) 478, 697
Sau96I GGNCC 2 cut(s) 38, 938
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 783, 1094
SduI GDGCHC 2 cut(s) 123, 234
SfaNI GCATC 1 cut(s) 928
SfcI CTRYAG 3 cut(s) 298, 361, 678
SinI GGWCC 1 cut(s) 938
SmlI CTYRAG 2 cut(s) 253, 386
SmoI CTYRAG 2 cut(s) 253, 386
Sse9I AATT 6 cut(s) 154, 197, 346, 622, 821, 828
SsiI CCGC 4 cut(s) 36, 89, 193, 269
SspMI CTAG 2 cut(s) 54, 852
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 781, 1092
StyI CCWWGG 2 cut(s) 753, 1135
TaaI ACNGT 4 cut(s) 207, 548, 880, 1153
TaiI ACGT 3 cut(s) 631, 948, 1017
TasI AATT 6 cut(s) 154, 197, 346, 622, 821, 828
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 4 cut(s) 180, 446, 1125, 1201
Tru1I TTAA 3 cut(s) 831, 1176, 1206
Tru9I TTAA 3 cut(s) 831, 1176, 1206
TscAI CASTG 2 cut(s) 210, 249
TseFI GTSAC 2 cut(s) 711, 1147
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 2 cut(s) 711, 1147
TspDTI ATGAA 3 cut(s) 60, 201, 890
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 2 cut(s) 210, 249
Van91I CCANNNNNTGG 2 cut(s) 104, 722
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 938
XapI RAATTY 2 cut(s) 154, 197
XceI RCATGY 2 cut(s) 385, 1049
XspI CTAG 2 cut(s) 54, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.