Rmu_sc0013453.1_g000005

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013453.1
OG0012792
Physical Location & Seq
Reverse (-)
13971 .. 16859
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013453.1_g000005.1.cds

Sequence Viewer

Length: 843 bp
atgctagtaatcaaggtttctgcggaatctgccaacgagtttggtgagttggttgctgatccagtcaccaaagaactgttgcattacactgagaaaccagagacttttgtgagtgatttgatcaactgcggtgtttatgtatttaaccctgatgttttcaatgccattgaagacgtatccagtcaccgggaaggcagagtgacttgtattttgtcaattgcagctaatttacgccgtgtttccagctttgaagcgctccagtctgctacaaggaatcttcctacagattttgtcagattggatcaagatattttgtcacctcttgctggaaagaagcaattatatacttatgagaccatggatttctgggaacagattaagactccaggaatgtcattgaagtgttcgtctttgtatctttctcaatttcgattcacctcttcacatctattagctagcggagatggaatcaagaatgccacaatagttggtgatgtttatattcatccatcggcaaaagtacaccctagtgctaagattggtcccaatgtatctctttcagcaaatgttcggataggtgcgggagtaaggcttataagttgcatcgtcttggatgatgtggaaattaaggaaaatgcagttgttatacattctattgttggatggaagtcatctattgggagatggtcacgtgtccaggctgaaggagactacaatgcaaagcttggaattaccatccttggagaagcagtaactgttgaagacgaagttgtggtgattaacagcattgttctcccgaacaagactcttaatgttagcgtacaggaggagatcattttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

280

Amino Acids

30.66

Weight (kDa)

5.31

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04650 AT2G04650
fragaria_vesca FvH4_6g49920
malus_domestica MD09G1040800.v1.1 MD17G1042000.v1.1
prunus_persica Prupe.3G276900_v2.0.a1 Prupe.3G276900_v2.0.a1
pyrus_communis pycom111g03180 pycom17g03750
rosa_chinensis RchiOBHm_Chr2g0170091
rosa_laevigata RLG00000021921
rosa_multiflora Rmu_sc0013453.1_g000005
rosa_roxburghii Rroxscaffold_2G00081590
rosa_rugosa Rorug02G0545700.1
rosa_samantha Rh2AG617800 Rh2BG629300 Rh2DG641100
rosa_wichuraiana Rw2G051150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 596
AciI CCGC 4 cut(s) 23, 129, 459, 581
AclWI GGATC 2 cut(s) 53, 309
AcuI CTGAAG 1 cut(s) 723
AcvI CACGTG 1 cut(s) 692
AfaI GTAC 2 cut(s) 522, 822
AfeI AGCGCT 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 186, 326
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 5 cut(s) 160, 170, 251, 400, 761
AjnI CCWGG 2 cut(s) 385, 696
AleI CACNNNNGTG 1 cut(s) 528
AluBI AGCT 4 cut(s) 224, 246, 455, 724
AluI AGCT 4 cut(s) 224, 246, 455, 724
Alw26I GTCTC 3 cut(s) 95, 347, 702
AlwI GGATC 2 cut(s) 53, 309
AlwNI CAGNNNCTG 1 cut(s) 755
Aor51HI AGCGCT 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 542
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 7 cut(s) 56, 58, 176, 309, 427, 503, 787
AsuNHI GCTAGC 1 cut(s) 455
AvaII GGWCC 1 cut(s) 542
BbrPI CACGTG 1 cut(s) 692
BbsI GAAGAC 2 cut(s) 177, 768
BbvI GCAGC 1 cut(s) 233
BccI CCATC 5 cut(s) 458, 517, 657, 678, 743
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 2 cut(s) 387, 698
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 3 cut(s) 95, 347, 702
BfaI CTAG 3 cut(s) 5, 456, 528
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 257
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 3 cut(s) 188, 387, 698
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 544
BmrFI CCNGG 3 cut(s) 188, 387, 698
BmsI GCATC 1 cut(s) 612
BmtI GCTAGC 1 cut(s) 459
BpiI GAAGAC 2 cut(s) 177, 768
BpmI CTGGAG 2 cut(s) 242, 369
BpuMI CCSGG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 357, 739
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 326
Bse1I ACTGG 3 cut(s) 62, 180, 259
BseBI CCWGG 2 cut(s) 387, 698
BseDI CCNNGG 2 cut(s) 357, 739
BseGI GGATG 4 cut(s) 505, 619, 668, 735
BseLI CCNNNNNNNGG 2 cut(s) 186, 326
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 3 cut(s) 62, 180, 259
BseRI GAGGAG 1 cut(s) 842
BseXI GCAGC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 2 cut(s) 186, 326
BsmAI GTCTC 3 cut(s) 95, 347, 702
BsmFI GGGAC 1 cut(s) 528
BsmI GAATGC 1 cut(s) 481
Bso31I GGTCTC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 58, 120, 301, 831
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 4 cut(s) 23, 129, 459, 581
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 544
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 2 cut(s) 53, 309
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 3 cut(s) 62, 180, 259
BssECI CCNNGG 2 cut(s) 357, 739
BssMI GATC 4 cut(s) 58, 120, 301, 831
BssT1I CCWWGG 2 cut(s) 357, 739
Bst2UI CCWGG 2 cut(s) 387, 698
Bst4CI ACNGT 2 cut(s) 78, 757
Bst6I CTCTTC 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 90, 534
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 4 cut(s) 505, 619, 668, 735
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 4 cut(s) 61, 123, 304, 834
BstMAI GTCTC 3 cut(s) 95, 347, 702
BstMBI GATC 4 cut(s) 58, 120, 301, 831
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 387, 698
BstSCI CCNGG 3 cut(s) 186, 385, 696
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 2 cut(s) 177, 768
BsuI GTATCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 4 cut(s) 505, 619, 668, 735
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 457
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 2 cut(s) 521, 821
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 1 cut(s) 358
CviJI RGCY 6 cut(s) 224, 246, 455, 592, 701, 724
CviKI_1 RGCY 6 cut(s) 224, 246, 455, 592, 701, 724
CviQI GTAC 2 cut(s) 521, 821
DdeI CTNAG 2 cut(s) 90, 534
DpnI GATC 4 cut(s) 60, 122, 303, 833
DpnII GATC 4 cut(s) 58, 120, 301, 831
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 357, 739
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 542
Eco47III AGCGCT 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 723
Eco72I CACGTG 1 cut(s) 692
EcoRII CCWGG 2 cut(s) 385, 696
EcoT14I CCWWGG 2 cut(s) 357, 739
ErhI CCWWGG 2 cut(s) 357, 739
FaeI CATG 1 cut(s) 361
FaiI YATR 8 cut(s) 138, 343, 345, 351, 359, 501, 596, 647
FaqI GGGAC 1 cut(s) 528
FatI CATG 1 cut(s) 357
FauI CCCGC 1 cut(s) 574
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 4 cut(s) 492, 626, 675, 722
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 3 cut(s) 5, 456, 528
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 242, 369
HaeII RGCGCY 1 cut(s) 257
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 256
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 6 cut(s) 26, 274, 382, 432, 468, 805
HpaII CCGG 1 cut(s) 187
HphI GGTGA 7 cut(s) 56, 58, 176, 309, 427, 503, 787
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 2 cut(s) 296, 573
Hpy188III TCNNGA 3 cut(s) 305, 472, 796
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 185, 698
HpyCH4III ACNGT 2 cut(s) 78, 757
HpyCH4IV ACGT 2 cut(s) 174, 691
HpyCH4V TGCA 5 cut(s) 82, 221, 603, 638, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 90, 534
HpySE526I ACGT 2 cut(s) 174, 691
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 4 cut(s) 58, 120, 301, 831
LmnI GCTCC 1 cut(s) 261
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 612
MaeI CTAG 3 cut(s) 5, 456, 528
MaeII ACGT 2 cut(s) 174, 691
MaeIII GTNAC 6 cut(s) 64, 182, 199, 315, 687, 751
MalI GATC 4 cut(s) 60, 122, 303, 833
MboI GATC 4 cut(s) 58, 120, 301, 831
MboII GAAGA 4 cut(s) 182, 269, 432, 773
MfeI CAATTG 1 cut(s) 216
MluCI AATT 6 cut(s) 216, 226, 338, 425, 624, 729
MlyI GAGTC 2 cut(s) 376, 799
MmeI TCCRAC 1 cut(s) 640
MnlI CCTC 3 cut(s) 330, 448, 820
MseI TTAA 5 cut(s) 144, 378, 627, 780, 810
MslI CAYNNNNRTG 2 cut(s) 400, 528
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 3 cut(s) 188, 387, 698
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 2 cut(s) 387, 698
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 1 cut(s) 357
NdeII GATC 4 cut(s) 58, 120, 301, 831
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 544
NmuCI GTSAC 5 cut(s) 64, 182, 199, 315, 687
OliI CACNNNNGTG 1 cut(s) 528
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 4 cut(s) 26, 274, 432, 468
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 376, 799
PmaCI CACGTG 1 cut(s) 692
PmlI CACGTG 1 cut(s) 692
PpsI GAGTC 2 cut(s) 376, 799
Ppu21I YACGTR 1 cut(s) 692
PsiI TTATAA 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 385, 696
PspCI CACGTG 1 cut(s) 692
PspGI CCWGG 2 cut(s) 385, 696
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 1 cut(s) 542
PstNI CAGNNNCTG 1 cut(s) 755
RsaI GTAC 2 cut(s) 522, 822
RsaNI GTAC 2 cut(s) 521, 821
RseI CAYNNNNRTG 2 cut(s) 400, 528
SaqAI TTAA 5 cut(s) 144, 378, 627, 780, 810
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 4 cut(s) 58, 120, 301, 831
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 2 cut(s) 376, 799
ScrFI CCNGG 3 cut(s) 188, 387, 698
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 2 cut(s) 400, 528
Sse9I AATT 6 cut(s) 216, 226, 338, 425, 624, 729
SsiI CCGC 4 cut(s) 23, 129, 459, 581
SspMI CTAG 3 cut(s) 5, 456, 528
StyD4I CCNGG 3 cut(s) 186, 385, 696
StyI CCWWGG 2 cut(s) 357, 739
TaaI ACNGT 2 cut(s) 78, 757
TaiI ACGT 2 cut(s) 177, 694
TaqI TCGA 1 cut(s) 430
TasI AATT 6 cut(s) 216, 226, 338, 425, 624, 729
TatI WGTACW 1 cut(s) 520
TfiI GAWTC 4 cut(s) 26, 274, 432, 468
Tru1I TTAA 5 cut(s) 144, 378, 627, 780, 810
Tru9I TTAA 5 cut(s) 144, 378, 627, 780, 810
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 5 cut(s) 64, 182, 199, 315, 687
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 5 cut(s) 64, 182, 199, 315, 687
TspDTI ATGAA 1 cut(s) 494
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 542
XspI CTAG 3 cut(s) 5, 456, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.