Rh2DG641100

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012792
Physical Location & Seq
Reverse (-)
86866099 .. 86869801
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG641100.1

Sequence Viewer

Length: 1140 bp
ATGGAAAGCTCAGGAGAGAAGGTCGTCGCCGTAATCATGGTCGGAGGCCCAACTAAAGGGACTAGATTTCGGCCTCTGTCATTCAACACGCCAAAGCCGCTATTCCCATTGGCTGGGCAAGCCATGGTTCATCATCCAATCTCAGCTTGTAAGAAGATACCCAATTTGGCTCAAATTTTTCTAATTGGGTTTTATGAGGAGCGTGAGTTTGCACTCTATGTTTCTTCGATTTCCAATGAGCTTAGAGTGCCGGTGAGGTACTTGAAAGAGGATAAACCACATGGCTCAGCTGGTGGTATTTATTACTTCAGAGATTTGATTATGGAAGACGGCCCGGTTTCTGCGGAATCTGCCAACGAGTTTGGTGAGTTGGTTGCTGATCCAGTCACCAAAGAACTGTTGCATTACACTGAGAAACCAGAGACTTTTGTGAGTGATTTGATCAACTGCGGTGTTTATGTATTTACCCCTGATGTTTTCAATGCCATTGAAGACGTATCCAGTCACCGGGAAGGCAGAGCTAATTTACGCCGTGTTTCCAGCTTTGAAGCGCTCCAGTCTGCTACAAGGAATCTTCCTACAGATTTTGTCAGATTGGATCAAGATATTTTGTCACCTCTTGCTGGAAAGAAGCAATTATATACTTATGAGACCATGGATTTCTGGGAACAGATTAAGACTCCAGGAATGTCATTGAAGTGTTCGTCTTTGTATCTTTCTCAATTTCGATTCACCTCTTCACATCTATTAGCTAGCGGAGATGGAATCAAGAATGCCACAATAGTTGGTGATGTTTATATTCATCCATCGGCAAAAGTGCACCCTAGTGCTAAGATTGGTCCCAATGTATCTCTTTCAGCAAATGTTCGGATAGGTGCGGGAGTAAGGCTTATAAGTTGCATCGTCTTGGATGATGTGGAAATTAAGGAAAATGCAGTTGTTATACATTCTATTGTTGGATGGAAGTCATCTATTGGGAGATGGTCACGTGTCCAGGCTGAAGGAGACTACAATGCAAAGCTTGGAATTACCATCCTTGGAGAAGCAGTAACTGTTGAAGACGAAGTTGTGGTGATTAACAGCATTGTTCTCCCGAACAAGACTCTTAATGTTAGCGTACAGGAGGAGATCATTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

379

Amino Acids

41.72

Weight (kDa)

5.78

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 10 - 110 4.3e-12 Nucleotidyl transferase
LbH_EIF2B PF25084 257 - 333 6.4e-07 EIF2B subunit epsilon LbH domain
Hexapep PF00132 259 - 292 9.2e-06 Bacterial transferase hexapeptide (six repeats)
GMPPB_C PF25087 261 - 378 4.5e-37 GMPPB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04650 AT2G04650
fragaria_vesca FvH4_6g49920
malus_domestica MD09G1040800.v1.1 MD17G1042000.v1.1
prunus_persica Prupe.3G276900_v2.0.a1 Prupe.3G276900_v2.0.a1
pyrus_communis pycom111g03180 pycom17g03750
rosa_chinensis RchiOBHm_Chr2g0170091
rosa_laevigata RLG00000021921
rosa_multiflora Rmu_sc0013453.1_g000005
rosa_roxburghii Rroxscaffold_2G00081590
rosa_rugosa Rorug02G0545700.1
rosa_samantha Rh2AG617800 Rh2BG629300 Rh2DG641100
rosa_wichuraiana Rw2G051150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 893
AccB7I CCANNNNNTGG 1 cut(s) 113
AciI CCGC 5 cut(s) 98, 344, 450, 756, 878
AclWI GGATC 2 cut(s) 374, 606
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 292, 1020
AcvI CACGTG 1 cut(s) 989
AfaI GTAC 2 cut(s) 260, 1119
AfeI AGCGCT 1 cut(s) 552
AfiI CCNNNNNNNGG 4 cut(s) 56, 113, 507, 623
AflIII ACRYGT 1 cut(s) 988
AgsI TTSAA 7 cut(s) 85, 265, 481, 491, 548, 697, 1058
AjnI CCWGG 2 cut(s) 682, 993
AleI CACNNNNGTG 1 cut(s) 825
AluBI AGCT 8 cut(s) 9, 146, 241, 290, 521, 543, 752, 1021
AluI AGCT 8 cut(s) 9, 146, 241, 290, 521, 543, 752, 1021
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 3 cut(s) 416, 644, 999
Alw44I GTGCAC 1 cut(s) 818
AlwI GGATC 2 cut(s) 374, 606
AlwNI CAGNNNCTG 1 cut(s) 1052
Aor51HI AGCGCT 1 cut(s) 552
AoxI GGCC 3 cut(s) 46, 71, 331
ApaLI GTGCAC 1 cut(s) 818
ApoI RAATTY 1 cut(s) 174
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 3 cut(s) 47, 332, 839
AsuC2I CCSGG 2 cut(s) 335, 509
AsuHPI GGTGA 8 cut(s) 265, 377, 379, 497, 606, 724, 800, 1084
AsuNHI GCTAGC 1 cut(s) 752
AvaII GGWCC 1 cut(s) 839
BaeGI GKGCMC 1 cut(s) 822
BbrPI CACGTG 1 cut(s) 989
BbsI GAAGAC 3 cut(s) 333, 498, 1065
Bbv12I GWGCWC 1 cut(s) 822
BccI CCATC 5 cut(s) 755, 814, 954, 975, 1040
BceAI ACGGC 3 cut(s) 14, 346, 516
BciT130I CCWGG 2 cut(s) 684, 995
BciVI GTATCC 1 cut(s) 508
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 2 cut(s) 335, 509
BcoDI GTCTC 3 cut(s) 416, 644, 999
BfaI CTAG 3 cut(s) 63, 753, 825
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 554
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 4 cut(s) 335, 509, 684, 995
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 3 cut(s) 47, 332, 839
BmiI GGNNCC 1 cut(s) 841
BmrFI CCNGG 4 cut(s) 335, 509, 684, 995
BmsI GCATC 1 cut(s) 909
BmtI GCTAGC 1 cut(s) 756
BpiI GAAGAC 3 cut(s) 333, 498, 1065
BpmI CTGGAG 2 cut(s) 539, 666
Bpu10I CCTNAGC 1 cut(s) 10
Bpu1102I GCTNAGC 1 cut(s) 286
BpuMI CCSGG 2 cut(s) 335, 509
BsaAI YACGTR 1 cut(s) 989
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 123, 654, 1036
BsaXI ACNNNNNCTCC 6 cut(s) 6, 36, 191, 221, 1032, 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 113, 507, 623
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 383, 501, 556
BseBI CCWGG 2 cut(s) 684, 995
BseDI CCNNGG 3 cut(s) 123, 654, 1036
BseGI GGATG 5 cut(s) 133, 802, 916, 965, 1032
BseLI CCNNNNNNNGG 4 cut(s) 56, 113, 507, 623
BseMII CTCAG 4 cut(s) 24, 156, 300, 402
BseNI ACTGG 3 cut(s) 383, 501, 556
BseRI GAGGAG 2 cut(s) 212, 1139
BseSI GKGCMC 1 cut(s) 822
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 3 cut(s) 48, 73, 333
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 3 cut(s) 251, 335, 508
BslFI GGGAC 2 cut(s) 73, 825
BslI CCNNNNNNNGG 4 cut(s) 56, 113, 507, 623
BsmAI GTCTC 3 cut(s) 416, 644, 999
BsmFI GGGAC 2 cut(s) 73, 825
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 3 cut(s) 48, 73, 333
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 822
Bsp143I GATC 4 cut(s) 379, 441, 598, 1128
Bsp1720I GCTNAGC 1 cut(s) 286
Bsp19I CCATGG 2 cut(s) 123, 654
BspACI CCGC 5 cut(s) 98, 344, 450, 756, 878
BspANI GGCC 3 cut(s) 48, 73, 333
BspCNI CTCAG 4 cut(s) 23, 155, 299, 403
BspLI GGNNCC 1 cut(s) 841
BspOI GCTAGC 1 cut(s) 756
BspPI GGATC 2 cut(s) 374, 606
BspTNI GGTCTC 1 cut(s) 644
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 3 cut(s) 383, 501, 556
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 123, 654, 1036
BssMI GATC 4 cut(s) 379, 441, 598, 1128
BssT1I CCWWGG 3 cut(s) 123, 654, 1036
Bst2UI CCWGG 2 cut(s) 684, 995
Bst4CI ACNGT 2 cut(s) 399, 1054
Bst6I CTCTTC 1 cut(s) 742
BstBAI YACGTR 1 cut(s) 989
BstC8I GCNNGC 2 cut(s) 120, 754
BstDEI CTNAG 6 cut(s) 10, 142, 242, 286, 411, 831
BstDSI CCRYGG 2 cut(s) 123, 654
BstF5I GGATG 5 cut(s) 133, 802, 916, 965, 1032
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 4 cut(s) 382, 444, 601, 1131
BstMAI GTCTC 3 cut(s) 416, 644, 999
BstMBI GATC 4 cut(s) 379, 441, 598, 1128
BstMWI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 350
BstNI CCWGG 2 cut(s) 684, 995
BstSCI CCNGG 4 cut(s) 333, 507, 682, 993
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 822
BstV2I GAAGAC 3 cut(s) 333, 498, 1065
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 3 cut(s) 48, 73, 333
BtgI CCRYGG 2 cut(s) 123, 654
BtsCI GGATG 5 cut(s) 133, 802, 916, 965, 1032
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 120, 754
CaiI CAGNNNCTG 1 cut(s) 1052
CfoI GCGC 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 47, 332, 839
Csp6I GTAC 2 cut(s) 259, 1118
CspCI CAANNNNNGTGG 2 cut(s) 766, 801
CviAII CATG 4 cut(s) 37, 124, 281, 655
CviQI GTAC 2 cut(s) 259, 1118
DdeI CTNAG 6 cut(s) 10, 142, 242, 286, 411, 831
DpnI GATC 4 cut(s) 381, 443, 600, 1130
DpnII GATC 4 cut(s) 379, 441, 598, 1128
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Eco130I CCWWGG 3 cut(s) 123, 654, 1036
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 839
Eco47III AGCGCT 1 cut(s) 552
Eco57I CTGAAG 2 cut(s) 292, 1020
Eco72I CACGTG 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 682, 993
EcoT14I CCWWGG 3 cut(s) 123, 654, 1036
ErhI CCWWGG 3 cut(s) 123, 654, 1036
FaeI CATG 4 cut(s) 40, 127, 284, 658
FaqI GGGAC 2 cut(s) 73, 825
FatI CATG 4 cut(s) 36, 123, 280, 654
FauI CCCGC 1 cut(s) 871
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 5 cut(s) 120, 789, 923, 972, 1019
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 3 cut(s) 63, 753, 825
GlaI GCGC 1 cut(s) 552
GluI GCNGC 1 cut(s) 98
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 2 cut(s) 539, 666
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 3 cut(s) 48, 73, 333
HapII CCGG 3 cut(s) 251, 335, 508
HhaI GCGC 1 cut(s) 553
Hin1II CATG 4 cut(s) 40, 127, 284, 658
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HindIII AAGCTT 1 cut(s) 1019
HinfI GANTC 6 cut(s) 347, 571, 679, 729, 765, 1102
HpaII CCGG 3 cut(s) 251, 335, 508
HphI GGTGA 8 cut(s) 265, 377, 379, 497, 606, 724, 800, 1084
Hpy166II GTNNAC 1 cut(s) 820
Hpy188I TCNGA 4 cut(s) 44, 311, 593, 870
Hpy188III TCNNGA 4 cut(s) 12, 602, 769, 1093
Hpy8I GTNNAC 1 cut(s) 820
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 13, 506, 995
HpyCH4III ACNGT 2 cut(s) 399, 1054
HpyCH4IV ACGT 2 cut(s) 495, 988
HpyCH4V TGCA 6 cut(s) 212, 403, 820, 900, 935, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 350
HpyF3I CTNAG 6 cut(s) 10, 142, 242, 286, 411, 831
HpySE526I ACGT 2 cut(s) 495, 988
Hsp92II CATG 4 cut(s) 40, 127, 284, 658
HspAI GCGC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 4 cut(s) 379, 441, 598, 1128
LmnI GCTCC 2 cut(s) 199, 558
LweI GCATC 1 cut(s) 909
MaeI CTAG 3 cut(s) 63, 753, 825
MaeII ACGT 2 cut(s) 495, 988
MaeIII GTNAC 5 cut(s) 385, 503, 612, 984, 1048
MalI GATC 4 cut(s) 381, 443, 600, 1130
MboI GATC 4 cut(s) 379, 441, 598, 1128
MboII GAAGA 7 cut(s) 166, 216, 338, 503, 566, 729, 1070
MhlI GDGCHC 1 cut(s) 822
MluCI AATT 8 cut(s) 163, 174, 183, 523, 635, 722, 921, 1026
MlyI GAGTC 2 cut(s) 673, 1096
MmeI TCCRAC 2 cut(s) 22, 937
MnlI CCTC 8 cut(s) 38, 84, 190, 249, 262, 627, 745, 1117
MseI TTAA 4 cut(s) 675, 924, 1077, 1107
MslI CAYNNNNRTG 2 cut(s) 697, 825
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 3 cut(s) 251, 335, 508
MspR9I CCNGG 4 cut(s) 335, 509, 684, 995
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 2 cut(s) 684, 995
MwoI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 350
NciI CCSGG 2 cut(s) 335, 509
NcoI CCATGG 2 cut(s) 123, 654
NdeII GATC 4 cut(s) 379, 441, 598, 1128
NheI GCTAGC 1 cut(s) 752
NlaIII CATG 4 cut(s) 40, 127, 284, 658
NlaIV GGNNCC 1 cut(s) 841
NmuCI GTSAC 4 cut(s) 385, 503, 612, 984
OliI CACNNNNGTG 1 cut(s) 825
PctI GAATGC 1 cut(s) 778
PfeI GAWTC 4 cut(s) 347, 571, 729, 765
PflMI CCANNNNNTGG 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 2 cut(s) 673, 1096
PmaCI CACGTG 1 cut(s) 989
PmlI CACGTG 1 cut(s) 989
PpsI GAGTC 2 cut(s) 673, 1096
Ppu21I YACGTR 1 cut(s) 989
PsiI TTATAA 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 682, 993
PspCI CACGTG 1 cut(s) 989
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 2 cut(s) 682, 993
PspN4I GGNNCC 1 cut(s) 841
PspPI GGNCC 3 cut(s) 47, 332, 839
PstNI CAGNNNCTG 1 cut(s) 1052
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 260, 1119
RsaNI GTAC 2 cut(s) 259, 1118
RseI CAYNNNNRTG 2 cut(s) 697, 825
SaqAI TTAA 4 cut(s) 675, 924, 1077, 1107
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 4 cut(s) 379, 441, 598, 1128
Sau96I GGNCC 3 cut(s) 47, 332, 839
SchI GAGTC 2 cut(s) 673, 1096
ScrFI CCNGG 4 cut(s) 335, 509, 684, 995
SduI GDGCHC 1 cut(s) 822
SfaNI GCATC 1 cut(s) 909
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 2 cut(s) 697, 825
Sse9I AATT 8 cut(s) 163, 174, 183, 523, 635, 722, 921, 1026
SsiI CCGC 5 cut(s) 98, 344, 450, 756, 878
SspMI CTAG 3 cut(s) 63, 753, 825
StyD4I CCNGG 4 cut(s) 333, 507, 682, 993
StyI CCWWGG 3 cut(s) 123, 654, 1036
TaaI ACNGT 2 cut(s) 399, 1054
TaiI ACGT 2 cut(s) 498, 991
TaqI TCGA 2 cut(s) 227, 727
TasI AATT 8 cut(s) 163, 174, 183, 523, 635, 722, 921, 1026
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 4 cut(s) 347, 571, 729, 765
Tru1I TTAA 4 cut(s) 675, 924, 1077, 1107
Tru9I TTAA 4 cut(s) 675, 924, 1077, 1107
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 4 cut(s) 385, 503, 612, 984
Tsp45I GTSAC 4 cut(s) 385, 503, 612, 984
TspDTI ATGAA 2 cut(s) 119, 791
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 1 cut(s) 174
XspI CTAG 3 cut(s) 63, 753, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.