FvH4_6g49920

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012792
Physical Location & Seq
Reverse (-)
37280515 .. 37284188
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49920.t1

Sequence Viewer

Length: 1248 bp
ATGGACAGCTCAGGAGAGAAGGTCGTCGCCGTAATCATGGTCGGAGGCCCCACTAAAGGTACTAGATTCCGGCCTCTATCGTTCAACACGCCGAAGCCGCTTTTCCCGTTGGCCGGGCAAGCCATGGTTCATCATCCAATCTCAGCTTGTAAAAAGATACCCAATTTGGCTCAGATTTTTCTGATTGGGTTTTATGAGGAGCGTGAATTTGCACTCTATGTTTCTTCGATTTCGAATGAGCTTAAAGTGCCGGTGAGGTACTTGAAAGAGGATAAACCACATGGCTCAGCTGGTGGGATTTATTACTTCAGAGATTTGATCATGGAAGACAGCCCGTCGCATATCTTTTTGCTGAATTGTGATGTATGCTGCAGCTTTCCGCTTGCAGATATGCTTGAGGCTCATGTAAGATATGGTGGAATGGGTACAATGCTGGTGATCAAGGTTTCTGCTGAATCTGCCAACGAGTTTGGTGAGTTGGTTGCCGATCCGATCACCAAAGAACTGTTGCATTACACCGAGAAACCAGAGACTTTTGTGAGTGATTTGATAAACTGTGGTGTTTATGTATTCACCCCTGAAGTCTTTAATGCCATTGAAGATGTCTCCAGTCACCGGGAAGGCAGAGCCAATTTACGCCGTATTTCCAGCTTTGAAGCCCTTCAGTCTGCTACAAGGAATCTTCCTACAGATTTTGTCAGATTGGATCAAGATATTTTGTCACCTCTTGCTGGAAAGAAGCAGTTATATACTTATGAGACCATGGATTTCTGGGAACAGATCAAGACTCCAGGGATGGCATTGAAGTGTTCGTCTTTGTATCTTTATCAATTTCGATTCACCTCTTCACATCTTTTAGCTAGTGGAGATGGAATCAAGAATGCGACAATTGTTGGTGATGTTTATATTCATCCATCGGCAAAAGTACATCCTAGTGCTAAGATTGGTCCCAATGTATCTCTTTCGGCAAATGTTCGGATAGGTGCAGGAGTAAGACTTATAAGTTGCATCGTCTTGGATGATGTGGAAATTAAGGAAAATGCAGTTGTTATACATTCTATTGTTGGATGGAAGTCAACTATTGGGAAATGGTCGCGTGTGCAGGCCGAAGGAGACTTCAATGCAAAGCTTGGAATTACCATCCTTGGAGAAGCAGTAACTGTTGAAGACGAAGTTGTGGTGATTAACAGCATTGTTCTCCCACACAAGACTCTTAACGTTAGTGTACAAGAGGAGATCATTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

416

Amino Acids

45.77

Weight (kDa)

5.87

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 10 - 211 5.3e-31 Nucleotidyl transferase
LbH_EIF2B PF25084 293 - 369 3.3e-07 EIF2B subunit epsilon LbH domain
Hexapep PF00132 295 - 328 1e-05 Bacterial transferase hexapeptide (six repeats)
GMPPB_C PF25087 297 - 414 1.1e-37 GMPPB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04650 AT2G04650
fragaria_vesca FvH4_6g49920
malus_domestica MD09G1040800.v1.1 MD17G1042000.v1.1
prunus_persica Prupe.3G276900_v2.0.a1 Prupe.3G276900_v2.0.a1
pyrus_communis pycom111g03180 pycom17g03750
rosa_chinensis RchiOBHm_Chr2g0170091
rosa_laevigata RLG00000021921
rosa_multiflora Rmu_sc0013453.1_g000005
rosa_roxburghii Rroxscaffold_2G00081590
rosa_rugosa Rorug02G0545700.1
rosa_samantha Rh2AG617800 Rh2BG629300 Rh2DG641100
rosa_wichuraiana Rw2G051150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1001
AccII CGCG 1 cut(s) 1096
AciI CCGC 2 cut(s) 98, 380
AclI AACGTT 1 cut(s) 1218
AclWI GGATC 2 cut(s) 482, 714
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 3 cut(s) 292, 600, 647
AfaI GTAC 5 cut(s) 61, 260, 427, 927, 1227
AfiI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
AgsI TTSAA 7 cut(s) 85, 265, 599, 656, 805, 1120, 1166
AhdI GACNNNNNGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 8 cut(s) 9, 146, 241, 290, 375, 651, 860, 1129
AluI AGCT 8 cut(s) 9, 146, 241, 290, 375, 651, 860, 1129
Alw26I GTCTC 4 cut(s) 524, 610, 752, 1107
AlwI GGATC 2 cut(s) 482, 714
AlwNI CAGNNNCTG 1 cut(s) 1160
AoxI GGCC 4 cut(s) 46, 71, 111, 1104
ApeKI GCWGC 2 cut(s) 369, 372
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 660
AspS9I GGNCC 2 cut(s) 47, 947
AsuC2I CCSGG 2 cut(s) 115, 617
AsuII TTCGAA 1 cut(s) 233
AvaII GGWCC 1 cut(s) 947
BbsI GAAGAC 2 cut(s) 333, 1173
BbvI GCAGC 2 cut(s) 356, 384
BccI CCATC 5 cut(s) 790, 863, 922, 1062, 1148
BceAI ACGGC 2 cut(s) 14, 624
BciT130I CCWGG 1 cut(s) 792
BclI TGATCA 2 cut(s) 318, 438
BcnI CCSGG 2 cut(s) 115, 617
BcoDI GTCTC 4 cut(s) 524, 610, 752, 1107
BfaI CTAG 3 cut(s) 63, 861, 933
BfmI CTRYAG 2 cut(s) 370, 687
BisI GCNGC 3 cut(s) 98, 370, 373
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 3 cut(s) 99, 371, 374
Bme1390I CCNGG 3 cut(s) 115, 617, 792
Bme18I GGWCC 1 cut(s) 947
BmeRI GACNNNNNGTC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 47, 947
BmiI GGNNCC 2 cut(s) 49, 949
BmrFI CCNGG 3 cut(s) 115, 617, 792
BmsI GCATC 1 cut(s) 1017
BpiI GAAGAC 2 cut(s) 333, 1173
BpmI CTGGAG 2 cut(s) 592, 774
Bpu10I CCTNAGC 1 cut(s) 10
Bpu1102I GCTNAGC 1 cut(s) 286
Bpu14I TTCGAA 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 2 cut(s) 115, 617
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 4 cut(s) 123, 762, 791, 1144
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 1140, 1170
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 609
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 4 cut(s) 123, 762, 791, 1144
BseGI GGATG 7 cut(s) 133, 801, 910, 928, 1024, 1073, 1140
BseLI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
BseMII CTCAG 4 cut(s) 24, 156, 185, 300
BseNI ACTGG 1 cut(s) 609
BseRI GAGGAG 2 cut(s) 212, 1247
BseXI GCAGC 2 cut(s) 356, 384
BsgI GTGCAG 2 cut(s) 1005, 1121
Bsh1236I CGCG 1 cut(s) 1096
BshFI GGCC 4 cut(s) 48, 73, 113, 1106
BsiSI CCGG 4 cut(s) 70, 114, 251, 616
BslFI GGGAC 1 cut(s) 933
BslI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
BsmAI GTCTC 4 cut(s) 524, 610, 752, 1107
BsmFI GGGAC 1 cut(s) 933
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 4 cut(s) 48, 73, 113, 1106
Bso31I GGTCTC 1 cut(s) 752
Bsp119I TTCGAA 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 1225
Bsp143I GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
Bsp1720I GCTNAGC 1 cut(s) 286
Bsp19I CCATGG 2 cut(s) 123, 762
BspACI CCGC 2 cut(s) 98, 380
BspANI GGCC 4 cut(s) 48, 73, 113, 1106
BspCNI CTCAG 4 cut(s) 23, 155, 184, 299
BspFNI CGCG 1 cut(s) 1096
BspLI GGNNCC 2 cut(s) 49, 949
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 2 cut(s) 482, 714
BspT104I TTCGAA 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 1225
BsrI ACTGG 1 cut(s) 609
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 4 cut(s) 123, 762, 791, 1144
BssMI GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
BssT1I CCWWGG 3 cut(s) 123, 762, 1144
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 507, 557, 1162
Bst6I CTCTTC 1 cut(s) 850
BstAUI TGTACA 1 cut(s) 1225
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 120, 384, 1104
BstDEI CTNAG 5 cut(s) 10, 142, 171, 286, 939
BstDSI CCRYGG 2 cut(s) 123, 762
BstF5I GGATG 7 cut(s) 133, 801, 910, 928, 1024, 1073, 1140
BstFNI CGCG 1 cut(s) 1096
BstKTI GATC 7 cut(s) 321, 441, 490, 495, 709, 783, 1239
BstMAI GTCTC 4 cut(s) 524, 610, 752, 1107
BstMBI GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
BstMWI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 458
BstNI CCWGG 1 cut(s) 792
BstSCI CCNGG 3 cut(s) 113, 615, 790
BstSFI CTRYAG 2 cut(s) 370, 687
BstUI CGCG 1 cut(s) 1096
BstV1I GCAGC 2 cut(s) 356, 384
BstV2I GAAGAC 2 cut(s) 333, 1173
BsuRI GGCC 4 cut(s) 48, 73, 113, 1106
BtgI CCRYGG 2 cut(s) 123, 762
BtsCI GGATG 7 cut(s) 133, 801, 910, 928, 1024, 1073, 1140
Cac8I GCNNGC 3 cut(s) 120, 384, 1104
CaiI CAGNNNCTG 1 cut(s) 1160
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 47, 947
Csp6I GTAC 5 cut(s) 60, 259, 426, 926, 1226
CviAII CATG 6 cut(s) 37, 124, 281, 322, 404, 763
CviQI GTAC 5 cut(s) 60, 259, 426, 926, 1226
DdeI CTNAG 5 cut(s) 10, 142, 171, 286, 939
DpnI GATC 7 cut(s) 320, 440, 489, 494, 708, 782, 1238
DpnII GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
DriI GACNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 850
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 850
Eco130I CCWWGG 3 cut(s) 123, 762, 1144
Eco31I GGTCTC 1 cut(s) 752
Eco47I GGWCC 1 cut(s) 947
Eco57I CTGAAG 3 cut(s) 292, 600, 647
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 3 cut(s) 123, 762, 1144
ErhI CCWWGG 3 cut(s) 123, 762, 1144
FaeI CATG 6 cut(s) 40, 127, 284, 325, 407, 766
FaqI GGGAC 1 cut(s) 933
FatI CATG 6 cut(s) 36, 123, 280, 321, 403, 762
FbaI TGATCA 2 cut(s) 318, 438
Fnu4HI GCNGC 3 cut(s) 98, 370, 373
FokI GGATG 7 cut(s) 120, 808, 897, 915, 1031, 1080, 1127
Fsp4HI GCNGC 3 cut(s) 98, 370, 373
FspBI CTAG 3 cut(s) 63, 861, 933
GluI GCNGC 3 cut(s) 98, 370, 373
GsuI CTGGAG 2 cut(s) 592, 774
HaeIII GGCC 4 cut(s) 48, 73, 113, 1106
HapII CCGG 4 cut(s) 70, 114, 251, 616
Hin1II CATG 6 cut(s) 40, 127, 284, 325, 407, 766
HincII GTYRAC 1 cut(s) 1077
HindII GTYRAC 1 cut(s) 1077
HindIII AAGCTT 1 cut(s) 1127
HinfI GANTC 7 cut(s) 66, 455, 679, 787, 837, 873, 1210
HpaII CCGG 4 cut(s) 70, 114, 251, 616
Hpy166II GTNNAC 2 cut(s) 1077, 1226
Hpy188I TCNGA 7 cut(s) 44, 174, 183, 311, 492, 701, 978
Hpy188III TCNNGA 4 cut(s) 12, 710, 784, 877
Hpy8I GTNNAC 2 cut(s) 1077, 1226
Hpy99I CGWCG 2 cut(s) 29, 340
HpyAV CCTTC 4 cut(s) 13, 614, 671, 1103
HpyCH4III ACNGT 3 cut(s) 507, 557, 1162
HpyCH4IV ACGT 1 cut(s) 1218
HpyCH4V TGCA 9 cut(s) 212, 372, 386, 511, 986, 1008, 1043, 1102, 1124
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 458
HpyF3I CTNAG 5 cut(s) 10, 142, 171, 286, 939
HpySE526I ACGT 1 cut(s) 1218
Hsp92II CATG 6 cut(s) 40, 127, 284, 325, 407, 766
Ksp22I TGATCA 2 cut(s) 318, 438
Kzo9I GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 356, 384
LweI GCATC 1 cut(s) 1017
MaeI CTAG 3 cut(s) 63, 861, 933
MaeII ACGT 1 cut(s) 1218
MaeIII GTNAC 3 cut(s) 611, 720, 1156
MalI GATC 7 cut(s) 320, 440, 489, 494, 708, 782, 1238
MboI GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
MboII GAAGA 6 cut(s) 216, 338, 611, 674, 837, 1178
MfeI CAATTG 1 cut(s) 888
MluCI AATT 8 cut(s) 163, 206, 355, 631, 830, 888, 1029, 1134
MlyI GAGTC 2 cut(s) 781, 1204
MmeI TCCRAC 2 cut(s) 22, 1045
MnlI CCTC 9 cut(s) 38, 84, 190, 249, 262, 391, 735, 853, 1225
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 5 cut(s) 243, 588, 1032, 1185, 1215
MslI CAYNNNNRTG 2 cut(s) 805, 933
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 4 cut(s) 70, 114, 251, 616
MspR9I CCNGG 3 cut(s) 115, 617, 792
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 886
MvaI CCWGG 1 cut(s) 792
MvnI CGCG 1 cut(s) 1096
MwoI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 458
NciI CCSGG 2 cut(s) 115, 617
NcoI CCATGG 2 cut(s) 123, 762
NdeII GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
NlaIII CATG 6 cut(s) 40, 127, 284, 325, 407, 766
NlaIV GGNNCC 2 cut(s) 49, 949
NmuCI GTSAC 2 cut(s) 611, 720
NspV TTCGAA 1 cut(s) 233
PctI GAATGC 1 cut(s) 886
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 5 cut(s) 66, 455, 679, 837, 873
PkrI GCNGC 3 cut(s) 99, 371, 374
PleI GAGTC 2 cut(s) 781, 1204
PpsI GAGTC 2 cut(s) 781, 1204
PsiI TTATAA 1 cut(s) 1001
Psp1406I AACGTT 1 cut(s) 1218
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 2 cut(s) 49, 949
PspPI GGNCC 2 cut(s) 47, 947
PstI CTGCAG 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 1160
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 5 cut(s) 61, 260, 427, 927, 1227
RsaNI GTAC 5 cut(s) 60, 259, 426, 926, 1226
RseI CAYNNNNRTG 2 cut(s) 805, 933
SaqAI TTAA 5 cut(s) 243, 588, 1032, 1185, 1215
SatI GCNGC 3 cut(s) 98, 370, 373
Sau3AI GATC 7 cut(s) 318, 438, 487, 492, 706, 780, 1236
Sau96I GGNCC 2 cut(s) 47, 947
SchI GAGTC 2 cut(s) 781, 1204
ScrFI CCNGG 3 cut(s) 115, 617, 792
SfaNI GCATC 1 cut(s) 1017
SfcI CTRYAG 2 cut(s) 370, 687
SfuI TTCGAA 1 cut(s) 233
SinI GGWCC 1 cut(s) 947
SmiMI CAYNNNNRTG 2 cut(s) 805, 933
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 8 cut(s) 163, 206, 355, 631, 830, 888, 1029, 1134
SsiI CCGC 2 cut(s) 98, 380
SspMI CTAG 3 cut(s) 63, 861, 933
StyD4I CCNGG 3 cut(s) 113, 615, 790
StyI CCWWGG 3 cut(s) 123, 762, 1144
TaaI ACNGT 3 cut(s) 507, 557, 1162
TaiI ACGT 1 cut(s) 1221
TaqI TCGA 3 cut(s) 227, 233, 835
TasI AATT 8 cut(s) 163, 206, 355, 631, 830, 888, 1029, 1134
TatI WGTACW 2 cut(s) 925, 1225
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 5 cut(s) 66, 455, 679, 837, 873
Tru1I TTAA 5 cut(s) 243, 588, 1032, 1185, 1215
Tru9I TTAA 5 cut(s) 243, 588, 1032, 1185, 1215
TseFI GTSAC 2 cut(s) 611, 720
TseI GCWGC 2 cut(s) 369, 372
Tsp45I GTSAC 2 cut(s) 611, 720
TspDTI ATGAA 2 cut(s) 119, 899
VpaK11BI GGWCC 1 cut(s) 947
XapI RAATTY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 3 cut(s) 63, 861, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.