AT2G05170

Zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012419
Physical Location & Seq
Forward (+)
1869853 .. 1873997
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05170.1

Sequence Viewer

Length: 2799 bp
ATGTATCAATTGAGAAAATTTGACTTCTTCGAGGAGAAATACGGAGGCAAGATACCTGAGGATGTAACCGGAGATATACAATGTTGTTCCAGTGGCCGTGGCAAAGTCGTCATCGGCTCTAACGACGGATCCGTCAGCTTCCTCGATCGCGGTGTAAAGTTCGATTCCGGTTTCCAAGCTCACTCTTCCTCCGTCCTCTTCCTTCAACACCTCAAGCAAAGGAACTTTCTCGTCACCGTCGGAGAAGATGAACAAATATCGCCGCAACAGTCAGGGATGTGTCTTAAGGTTTTTGATCTTGACAAAGTTCAGGAGGAAGGTACTAGTTCCTCGGCTCCTGAATGCATTGGTATTCTTAGAATTTTCACCAATCAGTTTCCTGAAGCTAAGATTACTTCTTTTCTAGTCTTGGAGGAAGTTCCACCAATATTGCTTATAGCCATTGGCTTAGATAATGGCTGCATTTATTGTGTCAAAGGAGACATTGCACGAGAGCGTATCACTCGGTTTAAGCTTCAAGTGGATGGACGGTCCGCTATTACAGGCTTGGGGTTCAGGATGGATGGCCAAGCGCTTCTGTTGTTTGCAGTCACTCCAGAGTCAGTCAACTTGTTTAGTATGCAGGCGCAGCCACCGAAATTGCAGACTTTGGATCATATTGGGGGCAGTGTGAATACTGTTACAATGAGTGACCGCTCGGAATTAATAGTTGGTCGACCTGAGGCTGTTTACTTCTATGAAGTTGATGGACGTGGTCCTTGCTGGGCTTTTGAAGGAGAGAAAAAATTCATGGGGTGGTTCCGTGGCTACCTTTTATGTGTCATTGATGATTCTAAAACTGGGAACACTGTTTTTAATGTCTACGACCTCAGGAATCGGCTTATAGCATATAGCATTGTCGTTGATAAAGTCTCCAACATGCTCTGCGAATGGGGAAACATAATACTTATAAAGGCTGACAAATCCTTATTGTGCATTACCGAGAAGGATATGGAAAGCAAGTTAGATATGCTGTTCAAGAAAAACCTGTACACAGTAGCTATTAATCTTGTCCAGAGTCAACATGCCGATGCTGCTGCTACTGCCAATGTGATGAGGAAGTATGGAGATCATTTATATGGCAAACAGGACTTTGACGAAGCTATGTTACAGTACATTAACACAATTGGTTATCTTGAACCATCATTTGTGATACAAAAGTTTCTGGATGCACAGAGGATCTACAATCTTACTAATTACCTGGAGAAGTTGCATGAGAAGGGTCTAGCATCAAAAGACCACACAACTCTTTTGCTAAACTGTTACACTAAGTTGAAGGATGTAGAAAAGCTGAACACGTTCATTAGAAAAGAAGATGGCATCGGTGAGCTCAAGTTTGATGTGGAAACAGCCATTAGGGTCTGTCGTGCAGCTAATTACCATGAGCATGCAATGTACGTTGCAAAAAAGGCAGGAAAACATGAGTGGTATTTGAAAATTTTGCTTGAAGATCTTGGAAACTACGATGAAGCCCTGCAATATGTTTCAAGTCTTGAACCCAGTCAAGCTGGGGTAACAATTGAACAGTATGGTAAGATTCTTATAGAGCACAAGCCAAAAGAGACTATTGATATACTCATGCGACTTTGCACTGAGCAAGGGATTCCTAATGGTGTGTTCCTGTCCATGTTGCCATCACCTGTGGACTTCATCACTGTGTTTGTTCAGCATCCACATTCATTAATGCATTTTCTCGAGAGATATGCTGAAATAGTTCAGGATTCTCCTGCTCAAGCAGAAATCAATAACACACTCTTGGAATTATACTTGTCTAGGGACTTGAATTTTCCATCAATCTCTCTATCAGAAAATGGTCTAGATAAGGACTTAATAGATCATTCGGTAGCAGCTGCGGTGTCTAAAGCCGATCCTGAAAAGAAGACAAATGCTGATTCGAAGGATGCAATGGAGAAGGATTGTACGGAAAGACAACAGAAGGGACTGGAGTTACTTAAAATGGCATGGCCGTCAGACCTAGAGCAACCCCTCTATGATGTTGACCTTGCTGTAATTCTTTGCGAGATGAATTCGTTCAAGGATGGACTTCTGTATCTGTATGAAAAAATGAAATTTTACAAGGAGGTTATTGCTTGCTACATGCAGAATCATGATCACGAGGGACTGATTGCATGCTGCAAAAGATTAGGTGATTCTAGCAAGGGAGGGGATCCATCTCTTTGGGCAGATCTTCTCAAGTATTTCGGTGAAATTGGAGAGGACTGCACCAAAGAGGTGAAGGAGGTTCTCACTTATATTGAACGGGATGATATTTTACCTCCTATCATTGTTCTTCAGACCCTGGCAAAGAATCCATGCCTCACACTTTCTGTCATCAAAGACTACATAGCTCGGAAACTTGAGCAAGAGTCAAAAATAATTGAAGAGGACCGGCGAGCTGTAGAGAAGTATCAGGAAACGACTAAAAACATGAGAAAAGAGATTGAAGATCTCAGGACCAATGCCAGAATATTTCAACTTAGCAAGTGTACTGCTTGCACTTTCACATTGGATATCCCAGCTGTCCATTTCATGTGTATGCATTCATTCCATCAACGCTGCCTCGGTGACAACGAAAAAGAATGCCCCGAGTGTGCTCCCGAGTACAGATCTGTGATGGAAATGAAGAGAAGTTTGGAGCAGAACTCGAAAGACCAAGATCTGTTCTTCCAGCAAGTGAAAGGCTCGAAGGACGGGTTTTCTGTGATTGCAGAGTACTTTGGGAAAGGAATCATCAGCAAAACTAGAGATGCAACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000323 GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005769 GO:0005770 GO:0005773 GO:0005774 GO:0005856 GO:0005884 GO:0006810 GO:0006887 GO:0006904 GO:0006906 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0008150 GO:0008333 GO:0009705 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010256 GO:0010604 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019904 GO:0019905 GO:0022406 GO:0030139 GO:0030674 GO:0030897 GO:0031090 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031338 GO:0031410 GO:0031982 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032879 GO:0032940 GO:0032991 GO:0033043 GO:0033263 GO:0034058 GO:0035542 GO:0042144 GO:0042176 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051640 GO:0051641 GO:0051649 GO:0060090 GO:0060255 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0080090 GO:0080171 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0099023 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140029 GO:0140056 GO:1901998 GO:1902115 GO:1903362 GO:1903364 GO:1903649 GO:1903651 GO:2000641 GO:2000643
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
Clathrin VPS11_C zf-C3H2C3

Protein Analysis

932

Amino Acids

105.71

Weight (kDa)

5.33

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEP5_VPS11_N PF23341 5 - 328 8.5e-90 PEP5/VPS11 N-terminal
VPS11_N PF23266 24 - 324 4.1e-114 VPS11-like, N-terminal beta-propeller
TPR_PEP5_VPS11 PF23356 373 - 607 5.9e-62 PEP5/VPS11 Clathrin repeat
TPR_Vps41 PF23556 381 - 510 2.9e-07 Vps41 TPR-like region
Clathrin PF00637 395 - 533 9.8e-08 Region in Clathrin and VPS
TPR_PEP5_VPS11 PF23356 674 - 778 7.4e-19 PEP5/VPS11 Clathrin repeat
zf-C3H2C3 PF17122 842 - 877 1.6e-06 Zinc-finger
VPS11_C PF12451 882 - 924 6.5e-15 Vacuolar protein sorting protein 11 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05170
fragaria_vesca FvH4_6g40910 FvH4_6g40910
malus_domestica MD09G1123500.v1.1 MD17G1113900.v1.1
prunus_persica Prupe.3G200600_v2.0.a1
pyrus_communis pycom09g04750 pycom17g10560
rosa_chinensis RchiOBHm_Chr2g0156491
rosa_laevigata RLG00000020917
rosa_multiflora Rmu_co8501807.1_g000001 Rmu_sc0005392.1_g000009
rosa_roxburghii Rroxscaffold_2G00092980
rosa_rugosa Rorug02G0453700
rosa_samantha Rh2AG519800 Rh2BG532100 Rh2CG504800 Rh2DG541100
rosa_wichuraiana Rw2G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 950
AasI GACNNNNNNGTC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 696
AccI GTMKAC 2 cut(s) 715, 861
AccII CGCG 1 cut(s) 150
AciI CCGC 5 cut(s) 150, 263, 534, 694, 1892
AclWI GGATC 7 cut(s) 123, 136, 660, 1226, 1901, 2201, 2214
AcoI YGGCCR 3 cut(s) 94, 565, 2003
AcsI RAATTY 7 cut(s) 17, 360, 785, 1476, 1822, 2065, 2108
AcuI CTGAAG 2 cut(s) 402, 2315
AfaI GTAC 8 cut(s) 322, 1031, 1154, 1436, 1960, 2527, 2642, 2753
AfeI AGCGCT 1 cut(s) 573
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 1335
AhlI ACTAGT 1 cut(s) 323
AjiI CACGTC 1 cut(s) 752
AjnI CCWGG 2 cut(s) 1239, 2337
AjuI GAANNNNNNNTTGG 4 cut(s) 693, 725, 2654, 2686
Alw21I GWGCWC 3 cut(s) 1371, 1590, 2635
Alw26I GTCTC 3 cut(s) 474, 916, 1595
AlwI GGATC 7 cut(s) 123, 136, 660, 1226, 1901, 2201, 2214
AlwNI CAGNNNCTG 1 cut(s) 2338
Ama87I CYCGRG 3 cut(s) 1733, 2624, 2636
Aor51HI AGCGCT 1 cut(s) 573
AoxI GGCC 3 cut(s) 94, 565, 2003
ApeKI GCWGC 9 cut(s) 459, 628, 1073, 1076, 1409, 1886, 1889, 2172, 2595
ApoI RAATTY 7 cut(s) 17, 360, 785, 1476, 1822, 2065, 2108
AseI ATTAAT 3 cut(s) 704, 1044, 1721
Asp700I GAANNNNTTC 4 cut(s) 785, 1337, 1752, 2069
AspLEI GCGC 2 cut(s) 574, 628
AspS9I GGNCC 4 cut(s) 531, 755, 2425, 2493
AsuHPI GGTGA 8 cut(s) 226, 358, 1376, 1668, 2198, 2255, 2284, 2615
AsuII TTCGAA 1 cut(s) 1934
AvaI CYCGRG 3 cut(s) 1733, 2624, 2636
AvaII GGWCC 4 cut(s) 531, 755, 2425, 2493
AxyI CCTNAGG 3 cut(s) 57, 720, 869
BaeI ACNNNNGTAYC 4 cut(s) 1184, 1217, 2072, 2105
BalI TGGCCA 1 cut(s) 567
BamHI GGATCC 2 cut(s) 128, 2206
BanII GRGCYC 1 cut(s) 1371
BarI GAAGNNNNNNTAC 2 cut(s) 1131, 1163
BauI CACGAG 2 cut(s) 489, 2153
BbsI GAAGAC 1 cut(s) 1925
Bbv12I GWGCWC 3 cut(s) 1371, 1590, 2635
BbvI GCAGC 9 cut(s) 446, 640, 1060, 1063, 1421, 1876, 1898, 2159, 2582
BceAI ACGGC 2 cut(s) 81, 1990
BcgI CGANNNNNNTGC 4 cut(s) 1058, 1092, 1724, 1758
BciT130I CCWGG 2 cut(s) 1241, 2339
BclI TGATCA 1 cut(s) 2149
BcoDI GTCTC 3 cut(s) 474, 916, 1595
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 8 cut(s) 324, 404, 1265, 1812, 1856, 2015, 2193, 2781
BfmI CTRYAG 1 cut(s) 2436
BfoI RGCGCY 1 cut(s) 575
BfrI CTTAAG 1 cut(s) 284
BglII AGATCT 5 cut(s) 1489, 2224, 2485, 2645, 2695
BmcAI AGTACT 1 cut(s) 2753
Bme1390I CCNGG 2 cut(s) 1241, 2339
Bme18I GGWCC 4 cut(s) 531, 755, 2425, 2493
BmeT110I CYCGRG 3 cut(s) 1733, 2624, 2636
BmgBI CACGTC 1 cut(s) 752
BmgT120I GGNCC 4 cut(s) 531, 755, 2425, 2493
BmiI GGNNCC 4 cut(s) 130, 336, 800, 2208
BmrFI CCNGG 2 cut(s) 1241, 2339
BmrI ACTGGG 2 cut(s) 849, 1533
BmsI GCATC 7 cut(s) 1060, 1198, 1277, 1368, 1717, 1930, 2776
BmuI ACTGGG 2 cut(s) 849, 1533
BpiI GAAGAC 1 cut(s) 1925
BplI GAGNNNNNCTC 2 cut(s) 2666, 2698
BpmI CTGGAG 3 cut(s) 579, 1262, 2003
Bpu14I TTCGAA 1 cut(s) 1934
BpuEI CTTGAG 5 cut(s) 197, 1355, 1755, 2216, 2417
BsaJI CCNNGG 5 cut(s) 97, 330, 802, 2337, 2599
BsaWI WCCGGW 2 cut(s) 68, 167
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bse118I RCCGGY 1 cut(s) 2427
Bse1I ACTGG 4 cut(s) 90, 844, 1539, 1986
Bse21I CCTNAGG 3 cut(s) 57, 720, 869
Bse3DI GCAATG 3 cut(s) 483, 1437, 1950
BseBI CCWGG 2 cut(s) 1241, 2339
BseDI CCNNGG 5 cut(s) 97, 330, 802, 2337, 2599
BseMI GCAATG 3 cut(s) 483, 1437, 1950
BseMII CTCAG 5 cut(s) 48, 711, 883, 1623, 2503
BseNI ACTGG 4 cut(s) 90, 844, 1539, 1986
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 9 cut(s) 446, 640, 1060, 1063, 1421, 1876, 1898, 2159, 2582
BseYI CCCAGC 3 cut(s) 762, 1547, 2554
BsgI GTGCAG 2 cut(s) 1428, 2245
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 3 cut(s) 96, 567, 2005
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 3 cut(s) 1371, 1590, 2635
BsiHKCI CYCGRG 3 cut(s) 1733, 2624, 2636
BsiSI CCGG 3 cut(s) 69, 168, 2428
BslFI GGGAC 3 cut(s) 1829, 1992, 2172
BsmAI GTCTC 3 cut(s) 474, 916, 1595
BsmFI GGGAC 3 cut(s) 1829, 1992, 2172
BsmI GAATGC 3 cut(s) 347, 2578, 2624
BsnI GGCC 3 cut(s) 96, 567, 2005
BsoBI CYCGRG 3 cut(s) 1733, 2624, 2636
Bsp119I TTCGAA 1 cut(s) 1934
Bsp1286I GDGCHC 3 cut(s) 1371, 1590, 2635
Bsp1407I TGTACA 1 cut(s) 1029
BspACI CCGC 5 cut(s) 150, 263, 534, 694, 1892
BspANI GGCC 3 cut(s) 96, 567, 2005
BspCNI CTCAG 5 cut(s) 49, 712, 882, 1624, 2502
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 2146
BspLI GGNNCC 4 cut(s) 130, 336, 800, 2208
BspPI GGATC 7 cut(s) 123, 136, 660, 1226, 1901, 2201, 2214
BspT104I TTCGAA 1 cut(s) 1934
BspTI CTTAAG 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 696
BsrDI GCAATG 3 cut(s) 483, 1437, 1950
BsrFI RCCGGY 1 cut(s) 2427
BsrGI TGTACA 1 cut(s) 1029
BsrI ACTGG 4 cut(s) 90, 844, 1539, 1986
BssAI RCCGGY 1 cut(s) 2427
BssECI CCNNGG 5 cut(s) 97, 330, 802, 2337, 2599
BssSI CACGAG 2 cut(s) 489, 2153
Bst2BI CACGAG 2 cut(s) 489, 2153
Bst2UI CCWGG 2 cut(s) 1241, 2339
Bst6I CTCTTC 4 cut(s) 190, 203, 2415, 2657
BstAFI CTTAAG 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 1029
BstBI TTCGAA 1 cut(s) 1934
BstC8I GCNNGC 6 cut(s) 624, 1428, 2131, 2170, 2433, 2533
BstDSI CCRYGG 2 cut(s) 97, 802
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 2 cut(s) 574, 628
BstMAI GTCTC 3 cut(s) 474, 916, 1595
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 4 cut(s) 628, 1073, 1082, 1448
BstNI CCWGG 2 cut(s) 1241, 2339
BstNSI RCATGY 5 cut(s) 922, 1067, 1430, 2140, 2172
BstSCI CCNGG 2 cut(s) 1239, 2337
BstSFI CTRYAG 1 cut(s) 2436
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 9 cut(s) 446, 640, 1060, 1063, 1421, 1876, 1898, 2159, 2582
BstV2I GAAGAC 1 cut(s) 1925
BstX2I RGATCY 8 cut(s) 128, 1218, 1489, 2206, 2224, 2485, 2645, 2695
BstXI CCANNNNNNTGG 1 cut(s) 2217
BstYI RGATCY 8 cut(s) 128, 1218, 1489, 2206, 2224, 2485, 2645, 2695
Bsu36I CCTNAGG 3 cut(s) 57, 720, 869
BsuRI GGCC 3 cut(s) 96, 567, 2005
BtgI CCRYGG 2 cut(s) 97, 802
BtrI CACGTC 1 cut(s) 752
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 5 cut(s) 97, 673, 846, 1629, 1692
Cac8I GCNNGC 6 cut(s) 624, 1428, 2131, 2170, 2433, 2533
CaiI CAGNNNCTG 1 cut(s) 2338
CciI TCATGA 1 cut(s) 2146
CfoI GCGC 2 cut(s) 574, 628
Cfr10I RCCGGY 1 cut(s) 2427
Cfr13I GGNCC 4 cut(s) 531, 755, 2425, 2493
CpoI CGGWCCG 1 cut(s) 531
Csp6I GTAC 8 cut(s) 321, 1030, 1153, 1435, 1959, 2526, 2641, 2752
CspCI CAANNNNNGTGG 4 cut(s) 411, 446, 621, 656
CspI CGGWCCG 1 cut(s) 531
CviQI GTAC 8 cut(s) 321, 1030, 1153, 1435, 1959, 2526, 2641, 2752
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 3 cut(s) 94, 565, 2003
Eam1104I CTCTTC 4 cut(s) 190, 203, 2415, 2657
EarI CTCTTC 4 cut(s) 190, 203, 2415, 2657
Ecl136II GAGCTC 1 cut(s) 1369
Eco24I GRGCYC 1 cut(s) 1371
Eco32I GATATC 1 cut(s) 2551
Eco47I GGWCC 4 cut(s) 531, 755, 2425, 2493
Eco47III AGCGCT 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 1369
Eco57I CTGAAG 2 cut(s) 402, 2315
Eco81I CCTNAGG 3 cut(s) 57, 720, 869
Eco88I CYCGRG 3 cut(s) 1733, 2624, 2636
EcoICRI GAGCTC 1 cut(s) 1369
EcoRI GAATTC 1 cut(s) 2065
EcoRII CCWGG 2 cut(s) 1239, 2337
EcoRV GATATC 1 cut(s) 2551
EcoT22I ATGCAT 3 cut(s) 347, 1728, 2580
EcoT38I GRGCYC 1 cut(s) 1371
FaqI GGGAC 3 cut(s) 1829, 1992, 2172
FbaI TGATCA 1 cut(s) 2149
FblI GTMKAC 2 cut(s) 715, 861
FriOI GRGCYC 1 cut(s) 1371
FspBI CTAG 8 cut(s) 324, 404, 1265, 1812, 1856, 2015, 2193, 2781
GlaI GCGC 2 cut(s) 573, 627
GsaI CCCAGC 3 cut(s) 766, 1551, 2558
GsuI CTGGAG 3 cut(s) 579, 1262, 2003
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 3 cut(s) 96, 567, 2005
HapII CCGG 3 cut(s) 69, 168, 2428
HhaI GCGC 2 cut(s) 574, 628
Hin6I GCGC 2 cut(s) 572, 626
HinP1I GCGC 2 cut(s) 572, 626
HincII GTYRAC 4 cut(s) 607, 716, 1061, 2038
HindII GTYRAC 4 cut(s) 607, 716, 1061, 2038
HindIII AAGCTT 1 cut(s) 512
HpaII CCGG 3 cut(s) 69, 168, 2428
HphI GGTGA 8 cut(s) 226, 358, 1376, 1668, 2198, 2255, 2284, 2615
Hpy166II GTNNAC 9 cut(s) 607, 716, 730, 862, 1032, 1061, 1684, 2038, 2526
Hpy188I TCNGA 6 cut(s) 242, 700, 1846, 2011, 2334, 2391
Hpy8I GTNNAC 9 cut(s) 607, 716, 730, 862, 1032, 1061, 1684, 2038, 2526
Hpy99I CGWCG 2 cut(s) 128, 242
HpyCH4IV ACGT 3 cut(s) 751, 1337, 1437
HpyF10VI GCNNNNNNNGC 4 cut(s) 628, 1073, 1082, 1448
HpySE526I ACGT 3 cut(s) 751, 1337, 1437
HspAI GCGC 2 cut(s) 572, 626
Ksp22I TGATCA 1 cut(s) 2149
LmnI GCTCC 3 cut(s) 340, 2638, 2674
Lsp1109I GCAGC 9 cut(s) 446, 640, 1060, 1063, 1421, 1876, 1898, 2159, 2582
LweI GCATC 7 cut(s) 1060, 1198, 1277, 1368, 1717, 1930, 2776
MaeI CTAG 8 cut(s) 324, 404, 1265, 1812, 1856, 2015, 2193, 2781
MaeII ACGT 3 cut(s) 751, 1337, 1437
MbiI CCGCTC 1 cut(s) 696
MfeI CAATTG 3 cut(s) 8, 1164, 1557
MflI RGATCY 8 cut(s) 128, 1218, 1489, 2206, 2224, 2485, 2645, 2695
MhlI GDGCHC 3 cut(s) 1371, 1590, 2635
MlsI TGGCCA 1 cut(s) 567
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 3 cut(s) 608, 1066, 2414
MmeI TCCRAC 2 cut(s) 220, 939
Mox20I TGGCCA 1 cut(s) 567
Mph1103I ATGCAT 3 cut(s) 347, 1728, 2580
MroXI GAANNNNTTC 4 cut(s) 785, 1337, 1752, 2069
MscI TGGCCA 1 cut(s) 567
MslI CAYNNNNRTG 5 cut(s) 1068, 1116, 1425, 1694, 2573
Msp20I TGGCCA 1 cut(s) 567
MspA1I CMGCKG 2 cut(s) 1889, 2558
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 3 cut(s) 69, 168, 2428
MspR9I CCNGG 2 cut(s) 1241, 2339
MunI CAATTG 3 cut(s) 8, 1164, 1557
Mva1269I GAATGC 3 cut(s) 347, 2578, 2624
MvaI CCWGG 2 cut(s) 1241, 2339
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 4 cut(s) 628, 1073, 1082, 1448
NlaIV GGNNCC 4 cut(s) 130, 336, 800, 2208
NmeAIII GCCGAG 1 cut(s) 311
NmuCI GTSAC 4 cut(s) 232, 589, 689, 2603
NsiI ATGCAT 3 cut(s) 347, 1728, 2580
NspI RCATGY 5 cut(s) 922, 1067, 1430, 2140, 2172
NspV TTCGAA 1 cut(s) 1934
PaeI GCATGC 2 cut(s) 1430, 2172
PaeR7I CTCGAG 1 cut(s) 1733
PagI TCATGA 1 cut(s) 2146
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 129, 2607
PctI GAATGC 3 cut(s) 347, 2578, 2624
PdmI GAANNNNTTC 4 cut(s) 785, 1337, 1752, 2069
PflFI GACNNNGTC 1 cut(s) 753
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 3 cut(s) 607, 1065, 2413
PpsI GAGTC 3 cut(s) 607, 1065, 2413
PshBI ATTAAT 3 cut(s) 704, 1044, 1721
PsiI TTATAA 1 cut(s) 950
Psp124BI GAGCTC 1 cut(s) 1371
Psp6I CCWGG 2 cut(s) 1239, 2337
PspFI CCCAGC 3 cut(s) 762, 1547, 2554
PspGI CCWGG 2 cut(s) 1239, 2337
PspN4I GGNNCC 4 cut(s) 130, 336, 800, 2208
PspPI GGNCC 4 cut(s) 531, 755, 2425, 2493
PstNI CAGNNNCTG 1 cut(s) 2338
PsuI RGATCY 8 cut(s) 128, 1218, 1489, 2206, 2224, 2485, 2645, 2695
PsyI GACNNNGTC 1 cut(s) 753
PvuI CGATCG 1 cut(s) 148
PvuII CAGCTG 2 cut(s) 1889, 2558
RsaI GTAC 8 cut(s) 322, 1031, 1154, 1436, 1960, 2527, 2642, 2753
RsaNI GTAC 8 cut(s) 321, 1030, 1153, 1435, 1959, 2526, 2641, 2752
RseI CAYNNNNRTG 5 cut(s) 1068, 1116, 1425, 1694, 2573
Rsr2I CGGWCCG 1 cut(s) 531
RsrII CGGWCCG 1 cut(s) 531
SacI GAGCTC 1 cut(s) 1371
SalI GTCGAC 1 cut(s) 714
Sau96I GGNCC 4 cut(s) 531, 755, 2425, 2493
ScaI AGTACT 1 cut(s) 2753
SchI GAGTC 3 cut(s) 608, 1066, 2414
ScrFI CCNGG 2 cut(s) 1241, 2339
SduI GDGCHC 3 cut(s) 1371, 1590, 2635
SfaNI GCATC 7 cut(s) 1060, 1198, 1277, 1368, 1717, 1930, 2776
SfcI CTRYAG 1 cut(s) 2436
Sfr274I CTCGAG 1 cut(s) 1733
SfuI TTCGAA 1 cut(s) 1934
SinI GGWCC 4 cut(s) 531, 755, 2425, 2493
SlaI CTCGAG 1 cut(s) 1733
SmiMI CAYNNNNRTG 5 cut(s) 1068, 1116, 1425, 1694, 2573
SmlI CTYRAG 7 cut(s) 212, 284, 1370, 1733, 1770, 2231, 2396
SmoI CTYRAG 7 cut(s) 212, 284, 1370, 1733, 1770, 2231, 2396
SpeI ACTAGT 1 cut(s) 323
SphI GCATGC 2 cut(s) 1430, 2172
SsiI CCGC 5 cut(s) 150, 263, 534, 694, 1892
SspI AATATT 2 cut(s) 429, 2508
SspMI CTAG 8 cut(s) 324, 404, 1265, 1812, 1856, 2015, 2193, 2781
SstI GAGCTC 1 cut(s) 1371
StyD4I CCNGG 2 cut(s) 1239, 2337
TaiI ACGT 3 cut(s) 754, 1340, 1440
TaqI TCGA 8 cut(s) 30, 144, 162, 715, 1734, 1934, 2684, 2723
TatI WGTACW 5 cut(s) 1029, 1152, 2525, 2640, 2751
TauI GCSGC 1 cut(s) 265
TscAI CASTG 5 cut(s) 97, 673, 853, 1636, 1699
TseFI GTSAC 4 cut(s) 232, 589, 689, 2603
TseI GCWGC 9 cut(s) 459, 628, 1073, 1076, 1409, 1886, 1889, 2172, 2595
Tsp45I GTSAC 4 cut(s) 232, 589, 689, 2603
TspGWI ACGGA 6 cut(s) 57, 121, 141, 181, 791, 1976
TspRI CASTG 5 cut(s) 97, 673, 853, 1636, 1699
Tth111I GACNNNGTC 1 cut(s) 753
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 4 cut(s) 531, 755, 2425, 2493
VspI ATTAAT 3 cut(s) 704, 1044, 1721
XapI RAATTY 7 cut(s) 17, 360, 785, 1476, 1822, 2065, 2108
XbaI TCTAGA 1 cut(s) 1855
XceI RCATGY 5 cut(s) 922, 1067, 1430, 2140, 2172
XhoI CTCGAG 1 cut(s) 1733
XmiI GTMKAC 2 cut(s) 715, 861
XmnI GAANNNNTTC 4 cut(s) 785, 1337, 1752, 2069
XspI CTAG 8 cut(s) 324, 404, 1265, 1812, 1856, 2015, 2193, 2781
ZrmI AGTACT 1 cut(s) 2753
Zsp2I ATGCAT 3 cut(s) 347, 1728, 2580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.