Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009775

Physical Location & Seq

Genomic Coordinates Reverse (-)

2082894 .. 2084905

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGATTAGCTCCTTCAAGCATGAACATCCTCTTGAAAAGAGACAAGCTGAAGCAGCACGTATCAGGGAGAAGTATCCAGACAGAATACCAGTCATTGTCGAAAGAGCCGAGAAGAGTGATGTCCCGGATATTGATAGGAAAAAGTACTTGGTCCCAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTACGGAAGCGGATCAAGCTCAGTCCCGAGAAAGCCATCTTCATTTTTGTCAAGAACATTCTACCACCAACTGCGGCAATAATGTCTGCAATTTATGAAGAGCACAAAGACGAAGACGGGTTTCTATACATGAGTTACAGTGGTGAGAACACGTTCGGGATCTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

120

Amino Acids

13.91

Weight (kDa)

7.93

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG8	PF02991	14 - 117	1.2e-51	Autophagy protein Atg8 ubiquitin like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05630
fragaria_vesca	FvH4_6g43130
prunus_persica	Prupe.3G216800_v2.0.a1 Prupe.3G216800_v2.0.a1
pyrus_communis	pycom17g09310
rosa_chinensis	RchiOBHm_Chr2g0159191 RchiOBHm_Chr5g0040231
rosa_laevigata	RLG00000021142
rosa_multiflora	Rmu_sc0002908.1_g000011 Rmu_sc0004528.1_g000006 Rmu_sc0010162.1_g000005 Rmu_sc0015963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041060 Rroxscaffold_2G00090710
rosa_rugosa	Rorug02G0474600 Rorug05G0184300
rosa_samantha	Rh5AG271200 Rh5BG274500 Rh5CG307400
rosa_wichuraiana	Rw2G044790 Rw5G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	202, 266
AclWI	GGATC	2 cut(s)	212, 359
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	149, 195
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	19, 38
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	4 cut(s)	12, 50, 161, 211
AluI	AGCT	4 cut(s)	12, 50, 161, 211
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	212, 359
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	57, 267
BlsI	GCNGC	2 cut(s)	58, 268
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	92, 178
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	92, 178
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	3 cut(s)	110, 140, 201
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	3 cut(s)	110, 140, 201
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	204, 351
BspACI	CCGC	2 cut(s)	202, 266
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	212, 359
BspQI	GCTCTTC	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	92, 178
BssMI	GATC	2 cut(s)	204, 351
Bst4CI	ACNGT	2 cut(s)	172, 332
Bst6I	CTCTTC	2 cut(s)	110, 285
BstBAI	YACGTR	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	207, 354
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	204, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 208
BstSCI	CCNGG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	148, 194
CviAII	CATG	2 cut(s)	23, 322
CviJI	RGCY	7 cut(s)	12, 50, 110, 161, 177, 211, 227
CviKI_1	RGCY	7 cut(s)	12, 50, 110, 161, 177, 211, 227
CviQI	GTAC	2 cut(s)	148, 194
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	2 cut(s)	206, 353
DpnII	GATC	2 cut(s)	204, 351
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	110, 285
EarI	CTCTTC	2 cut(s)	110, 285
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	218
FaeI	CATG	2 cut(s)	26, 325
FaiI	YATR	5 cut(s)	24, 189, 288, 319, 323
FaqI	GGGAC	3 cut(s)	110, 140, 201
FatI	CATG	2 cut(s)	22, 321
Fnu4HI	GCNGC	2 cut(s)	57, 267
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	57, 267
GluI	GCNGC	2 cut(s)	57, 267
GsaI	CCCAGC	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	2 cut(s)	26, 325
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	347
Hpy188III	TCNNGA	5 cut(s)	35, 80, 218, 244, 349
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	172, 332
HpyCH4IV	ACGT	2 cut(s)	61, 344
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 208
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	61, 344
Hsp92II	CATG	2 cut(s)	26, 325
Kzo9I	GATC	2 cut(s)	204, 351
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	52, 93, 105, 141, 171, 191
Lsp1109I	GCAGC	1 cut(s)	68
MaeII	ACGT	2 cut(s)	61, 344
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	206, 353
MboI	GATC	2 cut(s)	204, 351
MboII	GAAGA	6 cut(s)	127, 223, 302, 317, 346, 349
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	1 cut(s)	282
MluNI	TGGCCA	1 cut(s)	177
MnlI	CCTC	1 cut(s)	42
Mox20I	TGGCCA	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	56, 208
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	2 cut(s)	204, 351
NlaIII	CATG	2 cut(s)	26, 325
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	58, 268
Ppu21I	YACGTR	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	149, 195
RsaNI	GTAC	2 cut(s)	148, 194
SapI	GCTCTTC	1 cut(s)	285
SatI	GCNGC	2 cut(s)	57, 267
Sau3AI	GATC	2 cut(s)	204, 351
Sau96I	GGNCC	1 cut(s)	154
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	6 cut(s)	14, 52, 64, 163, 213, 347
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	2 cut(s)	202, 266
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	172, 332
TaiI	ACGT	2 cut(s)	64, 347
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	39, 223, 303
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.