Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015963.1

Orthogroup ID

OG0009775

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1837

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015963.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 340 bp

atggccaagaaatcgtataagttggagatccctctcgaacaaagggaagcagaagctgctcgcatcagagagaattatcctgacagggtaccggtgattgttgaaagggctgaaaagagtgatgtgcctgatattgagaagaacaaatacctggtgcctgccgatattactgttgggcagtttgtctttgtgatccggaaaaagatcaagcttgatcccgacaaggctattttcatttttgttaagaatattttgccacccacagctgctttgatgtctgcaatttatgaggaaaataaggatgaagatggttttctttatatgacatatagtggcgaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

113

Amino Acids

13.02

Weight (kDa)

5.33

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05630
fragaria_vesca	FvH4_6g43130
prunus_persica	Prupe.3G216800_v2.0.a1 Prupe.3G216800_v2.0.a1
pyrus_communis	pycom17g09310
rosa_chinensis	RchiOBHm_Chr2g0159191 RchiOBHm_Chr5g0040231
rosa_laevigata	RLG00000021142
rosa_multiflora	Rmu_sc0002908.1_g000011 Rmu_sc0004528.1_g000006 Rmu_sc0010162.1_g000005 Rmu_sc0015963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041060 Rroxscaffold_2G00090710
rosa_rugosa	Rorug02G0474600 Rorug05G0184300
rosa_samantha	Rh5AG271200 Rh5BG274500 Rh5CG307400
rosa_wichuraiana	Rw2G044790 Rw5G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	88
AccB1I	GGYRCC	2 cut(s)	88, 154
AccIII	TCCGGA	1 cut(s)	195
AclWI	GGATC	3 cut(s)	22, 187, 209
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	90
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	56, 211, 266
AluI	AGCT	3 cut(s)	56, 211, 266
AlwI	GGATC	3 cut(s)	22, 187, 209
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	56, 266
AsiGI	ACCGGT	1 cut(s)	91
Asp718I	GGTACC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	88, 154
BarI	GAAGNNNNNNTAC	2 cut(s)	131, 163
BbvI	GCAGC	2 cut(s)	43, 253
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	57, 267
BlsI	GCNGC	2 cut(s)	58, 268
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	90, 156
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	91, 195
Bse118I	RCCGGY	1 cut(s)	91
BseAI	TCCGGA	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	43, 253
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	88, 154
BshTI	ACCGGT	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	92, 196
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	27, 192, 204, 214
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	90, 156
BspPI	GGATC	3 cut(s)	22, 187, 209
BspT107I	GGYRCC	2 cut(s)	88, 154
BsrFI	RCCGGY	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	91
BssMI	GATC	4 cut(s)	27, 192, 204, 214
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	61, 159
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	4 cut(s)	30, 195, 207, 217
BstMBI	GATC	4 cut(s)	27, 192, 204, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	43, 253
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	61, 159
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	89
CspAI	ACCGGT	1 cut(s)	91
CviJI	RGCY	6 cut(s)	5, 56, 110, 211, 227, 266
CviKI_1	RGCY	6 cut(s)	5, 56, 110, 211, 227, 266
CviQI	GTAC	1 cut(s)	89
DpnI	GATC	4 cut(s)	29, 194, 206, 216
DpnII	GATC	4 cut(s)	27, 192, 204, 214
EaeI	YGGCCR	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	150
FaiI	YATR	6 cut(s)	18, 288, 321, 323, 328, 330
Fnu4HI	GCNGC	2 cut(s)	57, 267
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	57, 267
GluI	GCNGC	2 cut(s)	57, 267
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	92, 196
HindIII	AAGCTT	1 cut(s)	209
HpaII	CCGG	2 cut(s)	92, 196
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	4 cut(s)	35, 80, 196, 218
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	195
KpnI	GGTACC	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	27, 192, 204, 214
LpnPI	CCDG	8 cut(s)	70, 93, 105, 137, 141, 164, 171, 209
Lsp1109I	GCAGC	2 cut(s)	43, 253
LweI	GCATC	1 cut(s)	72
MabI	ACCWGGT	1 cut(s)	150
MalI	GATC	4 cut(s)	29, 194, 206, 216
MboI	GATC	4 cut(s)	27, 192, 204, 214
MboII	GAAGA	2 cut(s)	151, 317
MflI	RGATCY	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	73, 282
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	42, 283
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	92, 196
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	4 cut(s)	27, 192, 204, 214
NlaIV	GGNNCC	2 cut(s)	90, 156
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	58, 268
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	90, 156
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	57, 267
Sau3AI	GATC	4 cut(s)	27, 192, 204, 214
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	4 cut(s)	58, 153, 213, 268
SexAI	ACCWGGT	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	72
Sse9I	AATT	2 cut(s)	73, 282
SspI	AATATT	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	73, 282
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	2 cut(s)	56, 266
TspDTI	ATGAA	2 cut(s)	223, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.