Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009775

Physical Location & Seq

Genomic Coordinates Reverse (-)

21893786 .. 21895969

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCAAAAGTGCGTTCAAGATGGAGCACCCTCTCGAAAGGAGACAAGCAGAAGCTGCTCGCATAAGAGAGAAGTATCCTGACAGAATTCCAGTGGTCGTGGAAAGGGCTGAGAAGAGTGACGTGCCTGAAATTGACAAGAAAAAATACCTGGTGCCTGCTGATCTGACTGTTGGCCAGTTCGTGTATGTGGTTCGGAAAAGGATCAAGCTTGGTCCTGAGAAGGCTATTTTCATTTTTGTTAAGAATATTTTGCCACCCACAGCGGCTATGCTGTCTGCAATTTACGAGGAAAATAAGGATGAAGACGGTTTCCTTTACATGACCTACAGTGGGGAGAACACATTTGGGACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

120

Amino Acids

13.7

Weight (kDa)

8.78

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05630
fragaria_vesca	FvH4_6g43130
prunus_persica	Prupe.3G216800_v2.0.a1 Prupe.3G216800_v2.0.a1
pyrus_communis	pycom17g09310
rosa_chinensis	RchiOBHm_Chr2g0159191 RchiOBHm_Chr5g0040231
rosa_laevigata	RLG00000021142
rosa_multiflora	Rmu_sc0002908.1_g000011 Rmu_sc0004528.1_g000006 Rmu_sc0010162.1_g000005 Rmu_sc0015963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041060 Rroxscaffold_2G00090710
rosa_rugosa	Rorug02G0474600 Rorug05G0184300
rosa_samantha	Rh5AG271200 Rh5BG274500 Rh5CG307400
rosa_wichuraiana	Rw2G044790 Rw5G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	2 cut(s)	3, 175
AcsI	RAATTY	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	56, 211
AluI	AGCT	2 cut(s)	56, 211
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	3, 175
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	215
BalI	TGGCCA	2 cut(s)	5, 177
BanI	GGYRCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	57, 267
BlsI	GCNGC	2 cut(s)	58, 268
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	2 cut(s)	92, 178
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	102, 210
BseNI	ACTGG	2 cut(s)	92, 178
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	5, 177
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	5, 177
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	163, 204
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	2 cut(s)	5, 177
BspCNI	CTCAG	2 cut(s)	103, 211
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	92, 178
BssMI	GATC	2 cut(s)	163, 204
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	3 cut(s)	172, 311, 332
Bst6I	CTCTTC	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	61, 159
BstDEI	CTNAG	2 cut(s)	111, 219
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	166, 207
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	163, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 56
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	5, 177
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	99, 337
Cac8I	GCNNGC	2 cut(s)	61, 159
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	215
CsiI	ACCWGGT	1 cut(s)	150
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	7 cut(s)	5, 56, 110, 177, 211, 227, 269
CviKI_1	RGCY	7 cut(s)	5, 56, 110, 177, 211, 227, 269
DdeI	CTNAG	2 cut(s)	111, 219
DpnI	GATC	2 cut(s)	165, 206
DpnII	GATC	2 cut(s)	163, 204
EaeI	YGGCCR	2 cut(s)	3, 175
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	325
FaiI	YATR	4 cut(s)	65, 189, 272, 323
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	57, 267
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	57, 267
GluI	GCNGC	2 cut(s)	57, 267
HaeIII	GGCC	2 cut(s)	5, 177
Hin1II	CATG	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	168, 198, 359
Hpy188III	TCNNGA	4 cut(s)	19, 35, 80, 218
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	3 cut(s)	172, 311, 332
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 56
HpyF3I	CTNAG	2 cut(s)	111, 219
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	163, 204
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	93, 105, 137, 141, 164, 171, 191, 231
Lsp1109I	GCAGC	1 cut(s)	43
MabI	ACCWGGT	1 cut(s)	150
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	165, 206
MboI	GATC	2 cut(s)	163, 204
MboII	GAAGA	2 cut(s)	127, 317
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	2 cut(s)	5, 177
MluCI	AATT	3 cut(s)	87, 132, 282
MluNI	TGGCCA	2 cut(s)	5, 177
MnlI	CCTC	2 cut(s)	42, 283
Mox20I	TGGCCA	2 cut(s)	5, 177
MscI	TGGCCA	2 cut(s)	5, 177
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	2 cut(s)	5, 177
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	11, 56
NdeII	GATC	2 cut(s)	163, 204
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	58, 268
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	57, 267
Sau3AI	GATC	2 cut(s)	163, 204
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	58, 126, 153, 213, 329
SexAI	ACCWGGT	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	3 cut(s)	87, 132, 282
SsiI	CCGC	1 cut(s)	266
SspI	AATATT	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	172, 311, 332
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	87, 132, 282
TauI	GCSGC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	99, 337
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	223, 318
TspRI	CASTG	2 cut(s)	99, 337
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.