Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010162.1

Orthogroup ID

OG0009775

Physical Location & Seq

Genomic Coordinates Reverse (-)

23935 .. 25974

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010162.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggccaaaagctccttcaagctggaacaccctctggagaggaggcaggcagaagctgctcgtatcagggagaagtatcctgacagaattccggttattgtggagaaggctgaaaggagtgacataccagacattgacaagaagaagtacctggttcctgctgatctgactgttgggcagtttgtttatgtggtccggaagaggataaaacttagtgctgagaaagccatatttatatttgtcaagaacattttgccacctactgctgccatgatgtcggcaatctatgaggaaaacaaagacgaggatggtttcctttatatgacttacagtggagaaaatacatttggatccttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

119

Amino Acids

13.72

Weight (kDa)

8.78

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05630
fragaria_vesca	FvH4_6g43130
prunus_persica	Prupe.3G216800_v2.0.a1 Prupe.3G216800_v2.0.a1
pyrus_communis	pycom17g09310
rosa_chinensis	RchiOBHm_Chr2g0159191 RchiOBHm_Chr5g0040231
rosa_laevigata	RLG00000021142
rosa_multiflora	Rmu_sc0002908.1_g000011 Rmu_sc0004528.1_g000006 Rmu_sc0010162.1_g000005 Rmu_sc0015963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041060 Rroxscaffold_2G00090710
rosa_rugosa	Rorug02G0474600 Rorug05G0184300
rosa_samantha	Rh5AG271200 Rh5BG274500 Rh5CG307400
rosa_wichuraiana	Rw2G044790 Rw5G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	195
AclWI	GGATC	2 cut(s)	345, 358
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	87
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 330
AluBI	AGCT	3 cut(s)	12, 22, 56
AluI	AGCT	3 cut(s)	12, 22, 56
AlwI	GGATC	2 cut(s)	345, 358
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	56, 266
ApoI	RAATTY	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	43, 253
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	57, 267
BlsI	GCNGC	2 cut(s)	58, 268
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	156, 352
BmrFI	CCNGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	56
BsaWI	WCCGGW	2 cut(s)	91, 195
BseAI	TCCGGA	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	43, 253
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	92, 196
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	163, 350
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	211
BspEI	TCCGGA	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	156, 352
BspPI	GGATC	2 cut(s)	345, 358
BssMI	GATC	2 cut(s)	163, 350
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	172, 332
Bst6I	CTCTTC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	212, 219
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	2 cut(s)	166, 353
BstMBI	GATC	2 cut(s)	163, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 224
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	43, 253
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	193
CsiI	ACCWGGT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	6 cut(s)	5, 12, 22, 56, 110, 227
CviKI_1	RGCY	6 cut(s)	5, 12, 22, 56, 110, 227
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	212, 219
DpnI	GATC	2 cut(s)	165, 352
DpnII	GATC	2 cut(s)	163, 350
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	274
FaiI	YATR	8 cut(s)	125, 189, 230, 236, 272, 288, 321, 323
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	57, 267
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	57, 267
GluI	GCNGC	2 cut(s)	57, 267
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	92, 196
Hin1II	CATG	1 cut(s)	274
HpaII	CCGG	2 cut(s)	92, 196
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	4 cut(s)	35, 80, 196, 244
HpyAV	CCTTC	2 cut(s)	25, 100
HpyCH4III	ACNGT	2 cut(s)	172, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 224
HpyF3I	CTNAG	2 cut(s)	212, 219
Hsp92II	CATG	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	163, 350
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	2 cut(s)	43, 253
MabI	ACCWGGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	165, 352
MboI	GATC	2 cut(s)	163, 350
MboII	GAAGA	2 cut(s)	154, 211
MflI	RGATCY	1 cut(s)	350
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	33, 36, 42, 195, 283, 298
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	358
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	92, 196
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	56, 224
NdeII	GATC	2 cut(s)	163, 350
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	156, 352
NmuCI	GTSAC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	58, 268
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	156, 352
PspPI	GGNCC	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	2 cut(s)	57, 267
Sau3AI	GATC	2 cut(s)	163, 350
Sau96I	GGNCC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	5 cut(s)	14, 24, 58, 153, 262
SexAI	ACCWGGT	1 cut(s)	150
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	172, 332
TasI	AATT	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	56, 266
Tsp45I	GTSAC	1 cut(s)	119
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.