AT2G05910

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010195
Physical Location & Seq
Reverse (-)
2258281 .. 2259633
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05910.1

Sequence Viewer

Length: 576 bp
ATGAAAGCAGTGGTGAGCAAGTTGTATTGTTCCTCGATGGAGGAAGTGATGGTGGTGAGACGACGGCCACACGTGGTTAACGGCGGTGGCTTTGTGGTGACAGATTACAAAGAAAAGATAGTTTTCAAGATCGACGGTTGTGGAGTTCTTGGAACCAAAGGAGAGTTAGTTCTCAGAGATAGTGATGGCAACGATTTGCTTCTCATCCACAAAAAGGGAGGAGTGGTGCAGGCTTTGAGCATTCATAACAAGTGGAAAGGTTATAGTTACGACTACCAAGGAAGTCCTAAACCGGTTTTCACGTTGAGGGATCCCAAACACTCTTGCTTCTCCATAACCAGTTCAATCCGCATCTCGGTTGGACCGGGGAATTGCTACTTTGATGTTAAAGGGTATTTCCCGGATAGGGATTGTAGCATCGTTGATTCCAAAGGAAATGTCATTGCACAAGTAAAAGAATGGATTGGGAGTAGAGATATATATAAGGTGGTGACAAAACCAAGTGTGGATAAAGCTTTTGTTTTTGGAGTAATCGCGGTTCTTGACTATATATATGGTGAATCTACAAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

191

Amino Acids

21.13

Weight (kDa)

8.94

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 17 - 182 9.3e-27 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 536
AciI CCGC 3 cut(s) 84, 349, 536
AclWI GGATC 2 cut(s) 305, 318
AcoI YGGCCR 1 cut(s) 65
AcvI CACGTG 1 cut(s) 73
AfiI CCNNNNNNNGG 3 cut(s) 214, 355, 406
AflIII ACRYGT 1 cut(s) 70
AgeI ACCGGT 1 cut(s) 292
AgsI TTSAA 2 cut(s) 127, 345
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 2 cut(s) 305, 318
AoxI GGCC 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 423, 455
AsiGI ACCGGT 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 2 cut(s) 366, 401
AsuHPI GGTGA 5 cut(s) 25, 67, 109, 502, 569
AvaII GGWCC 1 cut(s) 362
BamHI GGATCC 1 cut(s) 310
BbrPI CACGTG 1 cut(s) 73
BccI CCATC 3 cut(s) 31, 43, 179
BceAI ACGGC 2 cut(s) 80, 97
BcnI CCSGG 2 cut(s) 366, 401
BcoDI GTCTC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 366, 401
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 154, 312
BmrFI CCNGG 2 cut(s) 366, 401
BmsI GCATC 2 cut(s) 360, 426
BpuMI CCSGG 2 cut(s) 366, 401
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 277, 365
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 210, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 355, 406
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 277, 365
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 214, 355, 406
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 536
BshFI GGCC 1 cut(s) 67
BshTI ACCGGT 1 cut(s) 292
BsiSI CCGG 3 cut(s) 293, 365, 401
BslI CCNNNNNNNGG 3 cut(s) 214, 355, 406
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 129, 310
BspACI CCGC 3 cut(s) 84, 349, 536
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 2 cut(s) 154, 312
BspPI GGATC 2 cut(s) 305, 318
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 277, 365
BssMI GATC 2 cut(s) 129, 310
BssT1I CCWWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 536
BstKTI GATC 2 cut(s) 132, 313
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 2 cut(s) 129, 310
BstSCI CCNGG 2 cut(s) 364, 399
BstUI CGCG 1 cut(s) 536
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 362
CspAI ACCGGT 1 cut(s) 292
CviJI RGCY 4 cut(s) 67, 90, 233, 515
CviKI_1 RGCY 4 cut(s) 67, 90, 233, 515
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 131, 312
DpnII GATC 2 cut(s) 129, 310
EaeI YGGCCR 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 52
FokI GGATG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 67
HapII CCGG 3 cut(s) 293, 365, 401
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 2 cut(s) 425, 560
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 3 cut(s) 293, 365, 401
HphI GGTGA 5 cut(s) 25, 67, 109, 502, 569
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 127, 542
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 66, 137
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 2 cut(s) 72, 302
HpyCH4V TGCA 2 cut(s) 229, 446
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 72, 302
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 129, 310
LpnPI CCDG 5 cut(s) 215, 306, 352, 378, 414
LweI GCATC 2 cut(s) 360, 426
MaeII ACGT 2 cut(s) 72, 302
MaeIII GTNAC 3 cut(s) 97, 266, 490
MalI GATC 2 cut(s) 131, 312
MboI GATC 2 cut(s) 129, 310
MflI RGATCY 1 cut(s) 310
MluCI AATT 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 4 cut(s) 34, 43, 212, 300
MseI TTAA 2 cut(s) 78, 387
MspI CCGG 3 cut(s) 293, 365, 401
MspR9I CCNGG 2 cut(s) 366, 401
Mva1269I GAATGC 1 cut(s) 240
MvnI CGCG 1 cut(s) 536
NciI CCSGG 2 cut(s) 366, 401
NdeII GATC 2 cut(s) 129, 310
NlaIV GGNNCC 2 cut(s) 154, 312
NmuCI GTSAC 2 cut(s) 97, 490
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 425, 560
PfoI TCCNGGA 1 cut(s) 399
PinAI ACCGGT 1 cut(s) 292
PmaCI CACGTG 1 cut(s) 73
PmlI CACGTG 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 73
PspCI CACGTG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 154, 312
PspPI GGNCC 1 cut(s) 362
PsrI GAACNNNNNNTAC 2 cut(s) 522, 554
PsuI RGATCY 1 cut(s) 310
SaqAI TTAA 2 cut(s) 78, 387
Sau3AI GATC 2 cut(s) 129, 310
Sau96I GGNCC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 366, 401
SetI ASST 5 cut(s) 75, 262, 305, 489, 517
SfaNI GCATC 2 cut(s) 360, 426
SinI GGWCC 1 cut(s) 362
Sse9I AATT 1 cut(s) 370
SsiI CCGC 3 cut(s) 84, 349, 536
StyD4I CCNGG 2 cut(s) 364, 399
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 2 cut(s) 75, 305
TaqI TCGA 2 cut(s) 35, 132
TasI AATT 1 cut(s) 370
TfiI GAWTC 2 cut(s) 425, 560
Tru1I TTAA 2 cut(s) 78, 387
Tru9I TTAA 2 cut(s) 78, 387
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 97, 490
Tsp45I GTSAC 2 cut(s) 97, 490
TspDTI ATGAA 2 cut(s) 17, 233
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.