RchiOBHm_Chr2g0095331

LURP-one-related 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010195
Physical Location & Seq
Forward (+)
8284187 .. 8285493
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47031

Sequence Viewer

Length: 615 bp
ATGGCAGCGAAAACCAACATGTTGCCTATAATCAGCAAGATGTATTGTTCTTCTGCACAGGGTGTGTTTGTAGTTAGGAGGAGGCCACATGCGATAAATGGAGGTGGTTTTGTAGTCACAGATTGTAGTCAGAAGGTTGCTTTCAGGGTTGATGGATGTGGAATTCTGGGAAAAAAGGATGAGCTGATTCTGAGAGATGGAGATGGAGACGCCTTGCTTCTCATTCGTCGAAAGGGAGCGATGGTTGAGGCGCTAAGCATTTACAGGAAATGGAAGGGCTATGCTTTAGACTATGAAGGATCACAGGAGTTGGTTTTCAGTTTGAAAGAGCCAAACTCATGCCTGGCAAGGACTCAAGCAATCAGAATCTCGACTAAGAGAACACAAAACAAAGACTGGGACTTCGAGATAAAGGGCCATTTCCCGGATAAGGCTTGTAGCATTGTTGACTGTAAAGGCAACGTAATGGCACAGATAGGAGTGAAGGAGTTGGAGAAGATGATGGCAAGTAAAGATCTGTATCATGTTGTGGTGACACCAGGCATAGATCAAGCTTTTGTATTCGGAGTCATTGCCATTCTTGATTACATCTATGGTGAATCCACCAGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

204

Amino Acids

22.65

Weight (kDa)

8.92

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 23 - 195 1.1e-30 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 2 cut(s) 62, 609
AfiI CCNNNNNNNGG 2 cut(s) 424, 430
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 3 cut(s) 342, 538, 605
AluBI AGCT 2 cut(s) 184, 554
AluI AGCT 2 cut(s) 184, 554
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 307
AoxI GGCC 2 cut(s) 83, 415
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 162
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 544, 608
BbvI GCAGC 1 cut(s) 17
BccI CCATC 5 cut(s) 146, 191, 197, 235, 496
BciT130I CCWGG 3 cut(s) 344, 540, 607
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 254
BglII AGATCT 1 cut(s) 514
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 4 cut(s) 344, 425, 540, 607
BmgT120I GGNCC 1 cut(s) 415
BmrFI CCNGG 4 cut(s) 344, 425, 540, 607
BmrI ACTGGG 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 406
BplI GAGNNNNNCTC 2 cut(s) 320, 352
Bpu1102I GCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 430
Bse1I ACTGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 3 cut(s) 344, 540, 607
BseGI GGATG 2 cut(s) 161, 184
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 424, 430
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 2 cut(s) 85, 417
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 424, 430
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 2 cut(s) 85, 417
Bsp143I GATC 3 cut(s) 299, 514, 547
Bsp1720I GCTNAGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 85, 417
BspCNI CTCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 1 cut(s) 401
BssMI GATC 3 cut(s) 299, 514, 547
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 344, 540, 607
Bst4CI ACNGT 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 191, 254, 375
BstF5I GGATG 2 cut(s) 161, 184
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 302, 517, 550
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 299, 514, 547
BstNI CCWGG 3 cut(s) 344, 540, 607
BstNSI RCATGY 2 cut(s) 22, 92
BstSCI CCNGG 4 cut(s) 342, 423, 538, 605
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 2 cut(s) 85, 417
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 161, 184
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 415
CseI GACGC 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 605
CviAII CATG 4 cut(s) 19, 89, 339, 524
CviJI RGCY 7 cut(s) 85, 184, 279, 331, 417, 434, 554
CviKI_1 RGCY 7 cut(s) 85, 184, 279, 331, 417, 434, 554
DdeI CTNAG 3 cut(s) 191, 254, 375
DpnI GATC 3 cut(s) 301, 516, 549
DpnII GATC 3 cut(s) 299, 514, 547
DraIII CACNNNGTG 2 cut(s) 62, 609
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 3 cut(s) 342, 538, 605
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 4 cut(s) 22, 92, 342, 527
FaiI YATR 9 cut(s) 20, 29, 90, 282, 294, 340, 525, 545, 594
FaqI GGGAC 1 cut(s) 413
FatI CATG 4 cut(s) 18, 88, 338, 523
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 168, 191
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 2 cut(s) 85, 417
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 4 cut(s) 22, 92, 342, 527
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 5 cut(s) 187, 352, 366, 567, 599
HpaII CCGG 1 cut(s) 425
HphI GGTGA 2 cut(s) 544, 608
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 4 cut(s) 132, 192, 365, 566
Hpy188III TCNNGA 3 cut(s) 370, 406, 581
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 4 cut(s) 127, 268, 290, 478
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 191, 254, 375
HpySE526I ACGT 1 cut(s) 462
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 4 cut(s) 22, 92, 342, 527
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 3 cut(s) 299, 514, 547
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 1 cut(s) 17
MabI ACCWGGT 1 cut(s) 605
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 115, 532
MalI GATC 3 cut(s) 301, 516, 549
MboI GATC 3 cut(s) 299, 514, 547
MboII GAAGA 2 cut(s) 42, 508
MflI RGATCY 1 cut(s) 514
MluCI AATT 1 cut(s) 162
MlyI GAGTC 2 cut(s) 346, 576
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 4 cut(s) 72, 75, 95, 241
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 4 cut(s) 344, 425, 540, 607
MvaI CCWGG 3 cut(s) 344, 540, 607
NciI CCSGG 1 cut(s) 425
NdeII GATC 3 cut(s) 299, 514, 547
NlaIII CATG 4 cut(s) 22, 92, 342, 527
NmuCI GTSAC 2 cut(s) 115, 532
NspI RCATGY 2 cut(s) 22, 92
PciI ACATGT 1 cut(s) 18
PfeI GAWTC 3 cut(s) 187, 366, 599
PfoI TCCNGGA 1 cut(s) 423
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 346, 575
PpsI GAGTC 2 cut(s) 346, 575
PscI ACATGT 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 342, 538, 605
PspGI CCWGG 3 cut(s) 342, 538, 605
PspPI GGNCC 1 cut(s) 415
PsuI RGATCY 1 cut(s) 514
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 299, 514, 547
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 2 cut(s) 346, 576
ScrFI CCNGG 4 cut(s) 344, 425, 540, 607
SetI ASST 6 cut(s) 106, 138, 186, 465, 556, 611
SexAI ACCWGGT 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 1 cut(s) 162
StyD4I CCNGG 4 cut(s) 342, 423, 538, 605
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 1 cut(s) 465
TaqI TCGA 3 cut(s) 229, 371, 405
TasI AATT 1 cut(s) 162
TfiI GAWTC 3 cut(s) 187, 366, 599
TseFI GTSAC 2 cut(s) 115, 532
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 115, 532
TspDTI ATGAA 1 cut(s) 309
XapI RAATTY 1 cut(s) 162
XceI RCATGY 2 cut(s) 22, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.