Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000183.1

Orthogroup ID

OG0010195

Physical Location & Seq

Genomic Coordinates Forward (+)

165060 .. 165895

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000183.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggcagcgaaaaccaacatgttgcctataatcagcaagatgtattgttcttctgcacagggtgtgtttgtagttaggaggaggccacatgcgataaatggaggtggttttgtagtcacagattgtagtcagaaggttgctttcagggttgatggatgtggaattctgggaaaaaaggatgagctgattctgagagatggagatggagacgccttgcttctcattcgtcgaaagggggcgatggttgaggcgctaagcatttataggaaatggaagggctatgctttagactatgaaggatcacaggagttggttttcagattgaaagagccaaactcatgcctggcaaggactcaagcaatcagaatctcgactaagagagcacaaaacaaagactgggacttcgagataaagggccatttcccggataaggcttgtagcattgttgactgtaaaggcaacgtaatggcacagataggagtgaaggagttggagaagatgatggcaagtaaagatctgtatcatgttgtggtgacaccaggcatagatcaagcttttgtattcggagtcattgccattcttgattacatgtatggtgaatccaccaggtgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

204

Amino Acids

22.71

Weight (kDa)

9.04

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05910
fragaria_vesca	FvH4_1g08870 FvH4_1g08870
malus_domestica	MD02G1093800.v1.1 MD02G1094100.v1.1 MD15G1219000.v1.1
prunus_persica	Prupe.7G196900_v2.0.a1
pyrus_communis	pycom02g07410
rosa_chinensis	RchiOBHm_Chr2g0095331
rosa_laevigata	RLG00000016555
rosa_multiflora	Rmu_ssc0000183.1_g000033
rosa_roxburghii	Rroxscaffold_2G00146470
rosa_rugosa	Rorug02G0049500 Rorug02G0049500 Rorug02G0049600 Rorug02G0049700
rosa_samantha	Rh2AG097800 Rh2BG099000 Rh2CG101100 Rh2DG098700
rosa_wichuraiana	Rw2G007380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	210
AdeI	CACNNNGTG	2 cut(s)	62, 609
AfiI	CCNNNNNNNGG	2 cut(s)	424, 430
AflIII	ACRYGT	2 cut(s)	18, 588
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	3 cut(s)	342, 538, 605
AluBI	AGCT	2 cut(s)	184, 554
AluI	AGCT	2 cut(s)	184, 554
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	83, 415
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	544, 608
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	5 cut(s)	146, 191, 197, 235, 496
BciT130I	CCWGG	3 cut(s)	344, 540, 607
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	254
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	4 cut(s)	344, 425, 540, 607
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	4 cut(s)	344, 425, 540, 607
BmrI	ACTGGG	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu1102I	GCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 430
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	3 cut(s)	344, 540, 607
BseGI	GGATG	2 cut(s)	161, 184
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	424, 430
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	85, 417
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	424, 430
BsmAI	GTCTC	1 cut(s)	201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	2 cut(s)	85, 417
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	299, 514, 547
Bsp1720I	GCTNAGC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	85, 417
BspCNI	CTCAG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	401
BssMI	GATC	3 cut(s)	299, 514, 547
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	344, 540, 607
Bst4CI	ACNGT	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	191, 254, 375
BstF5I	GGATG	2 cut(s)	161, 184
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	302, 517, 550
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	299, 514, 547
BstNI	CCWGG	3 cut(s)	344, 540, 607
BstNSI	RCATGY	3 cut(s)	22, 92, 592
BstSCI	CCNGG	4 cut(s)	342, 423, 538, 605
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	85, 417
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	161, 184
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	218
CsiI	ACCWGGT	1 cut(s)	605
CviAII	CATG	5 cut(s)	19, 89, 339, 524, 589
CviJI	RGCY	7 cut(s)	85, 184, 279, 331, 417, 434, 554
CviKI_1	RGCY	7 cut(s)	85, 184, 279, 331, 417, 434, 554
DdeI	CTNAG	3 cut(s)	191, 254, 375
DpnI	GATC	3 cut(s)	301, 516, 549
DpnII	GATC	3 cut(s)	299, 514, 547
DraIII	CACNNNGTG	2 cut(s)	62, 609
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	3 cut(s)	342, 538, 605
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	5 cut(s)	22, 92, 342, 527, 592
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	5 cut(s)	18, 88, 338, 523, 588
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	168, 191
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	85, 417
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	22, 92, 342, 527, 592
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	5 cut(s)	187, 352, 366, 567, 599
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	544, 608
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	5 cut(s)	132, 192, 320, 365, 566
Hpy188III	TCNNGA	3 cut(s)	370, 406, 581
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	4 cut(s)	127, 268, 290, 478
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	191, 254, 375
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	22, 92, 342, 527, 592
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	299, 514, 547
Lsp1109I	GCAGC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	605
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	115, 532
MalI	GATC	3 cut(s)	301, 516, 549
MboI	GATC	3 cut(s)	299, 514, 547
MboII	GAAGA	2 cut(s)	42, 508
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	346, 576
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	4 cut(s)	72, 75, 95, 241
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	4 cut(s)	344, 425, 540, 607
MvaI	CCWGG	3 cut(s)	344, 540, 607
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	3 cut(s)	299, 514, 547
NlaIII	CATG	5 cut(s)	22, 92, 342, 527, 592
NmuCI	GTSAC	2 cut(s)	115, 532
NspI	RCATGY	3 cut(s)	22, 92, 592
PciI	ACATGT	2 cut(s)	18, 588
PfeI	GAWTC	3 cut(s)	187, 366, 599
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	346, 575
PpsI	GAGTC	2 cut(s)	346, 575
PscI	ACATGT	2 cut(s)	18, 588
Psp6I	CCWGG	3 cut(s)	342, 538, 605
PspGI	CCWGG	3 cut(s)	342, 538, 605
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	514
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	299, 514, 547
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	346, 576
ScrFI	CCNGG	4 cut(s)	344, 425, 540, 607
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	6 cut(s)	106, 138, 186, 465, 556, 611
SexAI	ACCWGGT	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	162
StyD4I	CCNGG	4 cut(s)	342, 423, 538, 605
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	229, 371, 405
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	187, 366, 599
TseFI	GTSAC	2 cut(s)	115, 532
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	115, 532
TspDTI	ATGAA	1 cut(s)	309
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	3 cut(s)	22, 92, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.