FvH4_1g08870

LURP-one-related 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010195
Physical Location & Seq
Forward (+)
4712715 .. 4714165
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08870.t2

Sequence Viewer

Length: 615 bp
ATGGCAGCTAAAACCAACATAATGCCTGTAATCAGCAAGATGTATTGTTCATCAGCACAGGGTGTGTTTGTAGTCAGGAGGAGGCCTCATATGGTAAATGGAGGTGGGTTTGTAGTCACAGATTGTAGTCAGAAGGTTGCTTTCAGGGTTGATGGATGTGGAATTCTGGGGAAAAAAGATGAGCTTATTCTGAGAGATGGCGATGGAGACGCCTTGCTTCTCATTCGTCGAAAGGGAGCGATGGTTGAGGCGCTAAGCATTTACAGGAAATGGAAGGGTTATGCTTTAGACTATGAAGGATCACAGGAGTTGGCTTTTAGCTTGAAAGAGCCAAACTCATGTCTGGCAAGAACTCAAGCTATCAGAATCTCAACTAAGAGAACGGAAAACAAAGACTGGGACTTCGAGATAAAGGGTTATTTCCCTGCTAAGGCTTGTAGCATTGTTGACTCTAAAGGCAATGTAGTGGCAAAGATAGGAGTCAAGGAGTGGGAGGAGATGATGGCAAGTAAAGATCTGTATCATGTTGTGGTGACACCAGGCATAGATCAAGCTTTTGTATTCGGAGTCATTGCCATTCTCGATTACATCTATGGTGAATCCACCAGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

205

Amino Acids

22.66

Weight (kDa)

8.83

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 23 - 162 7.4e-20 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 2 cut(s) 62, 609
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 2 cut(s) 538, 605
AluBI AGCT 5 cut(s) 8, 184, 321, 359, 554
AluI AGCT 5 cut(s) 8, 184, 321, 359, 554
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 307
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 162
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 544, 608
BbvI GCAGC 1 cut(s) 17
BccI CCATC 5 cut(s) 146, 191, 197, 235, 496
BciT130I CCWGG 2 cut(s) 540, 607
BcoDI GTCTC 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 254
BglII AGATCT 1 cut(s) 514
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 540, 607
BmrFI CCNGG 2 cut(s) 540, 607
BmrI ACTGGG 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 406
BplI GAGNNNNNCTC 4 cut(s) 70, 102, 320, 352
Bpu10I CCTNAGC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 401
Bse3DI GCAATG 2 cut(s) 466, 570
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 540, 607
BseGI GGATG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 2 cut(s) 466, 570
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 2 cut(s) 94, 509
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 299, 514, 547
Bsp1720I GCTNAGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 307
BsrDI GCAATG 2 cut(s) 466, 570
BsrI ACTGG 1 cut(s) 401
BssMI GATC 3 cut(s) 299, 514, 547
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 540, 607
BstACI GRCGYC 1 cut(s) 210
BstDEI CTNAG 4 cut(s) 191, 254, 375, 429
BstF5I GGATG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 302, 517, 550
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 299, 514, 547
BstNI CCWGG 2 cut(s) 540, 607
BstSCI CCNGG 2 cut(s) 538, 605
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 1 cut(s) 85
BtgZI GCGATG 2 cut(s) 216, 254
BtsCI GGATG 1 cut(s) 161
CfoI GCGC 1 cut(s) 253
CseI GACGC 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 605
CviAII CATG 2 cut(s) 339, 524
CviJI RGCY 9 cut(s) 8, 85, 184, 314, 321, 331, 359, 434, 554
CviKI_1 RGCY 9 cut(s) 8, 85, 184, 314, 321, 331, 359, 434, 554
DdeI CTNAG 4 cut(s) 191, 254, 375, 429
DpnI GATC 3 cut(s) 301, 516, 549
DpnII GATC 3 cut(s) 299, 514, 547
DraIII CACNNNGTG 2 cut(s) 62, 609
Eco147I AGGCCT 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 538, 605
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 2 cut(s) 342, 527
FaiI YATR 9 cut(s) 20, 90, 92, 282, 294, 340, 525, 545, 594
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 413
FatI CATG 2 cut(s) 338, 523
FauNDI CATATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 1 cut(s) 85
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 342, 527
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 5 cut(s) 366, 449, 480, 567, 599
HphI GGTGA 2 cut(s) 544, 608
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 4 cut(s) 132, 192, 365, 566
Hpy188III TCNNGA 3 cut(s) 76, 406, 581
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 3 cut(s) 127, 268, 290
HpyF3I CTNAG 4 cut(s) 191, 254, 375, 429
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 342, 527
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 3 cut(s) 299, 514, 547
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 1 cut(s) 17
MabI ACCWGGT 1 cut(s) 605
MaeIII GTNAC 2 cut(s) 115, 532
MalI GATC 3 cut(s) 301, 516, 549
MboI GATC 3 cut(s) 299, 514, 547
MflI RGATCY 1 cut(s) 514
MluCI AATT 1 cut(s) 162
MlyI GAGTC 3 cut(s) 443, 489, 576
MnlI CCTC 6 cut(s) 72, 75, 95, 96, 241, 487
MspR9I CCNGG 2 cut(s) 540, 607
MvaI CCWGG 2 cut(s) 540, 607
NdeI CATATG 1 cut(s) 90
NdeII GATC 3 cut(s) 299, 514, 547
NlaIII CATG 2 cut(s) 342, 527
NmuCI GTSAC 2 cut(s) 115, 532
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 2 cut(s) 366, 599
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 443, 488, 575
PpsI GAGTC 3 cut(s) 443, 488, 575
Psp6I CCWGG 2 cut(s) 538, 605
PspGI CCWGG 2 cut(s) 538, 605
PsuI RGATCY 1 cut(s) 514
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 299, 514, 547
SchI GAGTC 3 cut(s) 443, 489, 576
ScrFI CCNGG 2 cut(s) 540, 607
SetI ASST 8 cut(s) 10, 106, 138, 186, 323, 361, 556, 611
SexAI ACCWGGT 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 1 cut(s) 162
SseBI AGGCCT 1 cut(s) 85
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 538, 605
TaqI TCGA 3 cut(s) 229, 405, 582
TasI AATT 1 cut(s) 162
TfiI GAWTC 2 cut(s) 366, 599
TseFI GTSAC 2 cut(s) 115, 532
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 115, 532
TspDTI ATGAA 2 cut(s) 39, 309
TspGWI ACGGA 1 cut(s) 398
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.