MD02G1094100.v1.1

LURP-one-related 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010195
Physical Location & Seq
Forward (+)
7477874 .. 7478727
854 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1094100.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGCAGCAAAAGACAATACCGTCATGCCTATAATTAGCCAGATGTACTGTTCGTCTTCTCAGGCTGTGCTTGTCGTGAGGAGGAGGCCGCACGTGATAAGCGGAGGTGGTTTTGTGGTTACGGACTGCAGTCAGAAGGTTGCTTTCAAGGTTGACGGATGTGGAATTCTGGGGAAAAAGGATGAGATGATTCTGAGGGACAGTGATGGAGACGCCTTGCTTCTCTTTCGCCGAAAGGGTGCAACCGTCGAGGCCCTAAGCATTTATCGGAGATGGAGGGGGTACAGTTTAGACTACGAAGGATCGCAGGACCAGATGGTTTTCTGTTTAAAAGAGCCAAACTCGTGCTTGGCAAAGACTCAAGCAATCAGAATCTCAATGAAAGCCACGAAGAACAAAGACTGGGACTTTGAGATCAAGGGCAATTTTCCTGATAAGGATTGTTGTATTGTTGACTCCAAGGGCAAAACAATGGCACAGATCGGGGTGAAGAAGGAACTGATGGCAAGCGAGGATCTCTACCATGTCGTGGTGACACCGGGAACGGATCAAGCTTTCGTTATTGGAATCATTACGATTCTCGACTACATCTATGGTGAATCCACCAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

205

Amino Acids

22.69

Weight (kDa)

8.37

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 23 - 195 4.3e-30 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 529
AciI CCGC 2 cut(s) 89, 102
AclWI GGATC 3 cut(s) 310, 522, 555
AcsI RAATTY 1 cut(s) 165
AcvI CACGTG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 609
AfaI GTAC 2 cut(s) 47, 284
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 605
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 3 cut(s) 310, 522, 555
AoxI GGCC 2 cut(s) 86, 252
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 165
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspS9I GGNCC 2 cut(s) 253, 310
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 3 cut(s) 499, 544, 608
AvaII GGWCC 1 cut(s) 310
BauI CACGAG 1 cut(s) 343
BbrPI CACGTG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 200, 267, 310, 496
BciT130I CCWGG 1 cut(s) 607
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 127
BisI GCNGC 2 cut(s) 6, 89
BlsI GCNGC 2 cut(s) 7, 90
Bme1390I CCNGG 2 cut(s) 540, 607
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 253, 310
BmrFI CCNGG 2 cut(s) 540, 607
BmrI ACTGGG 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 412
BoxI GACNNNNGTC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bpu10I CCTNAGC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 459
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 2 cut(s) 164, 187
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 74, 185
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 94, 97
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 88, 254
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 2 cut(s) 212, 419
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 1 cut(s) 204
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 2 cut(s) 212, 419
BsnI GGCC 2 cut(s) 88, 254
Bsp143I GATC 5 cut(s) 302, 414, 480, 514, 547
BspACI CCGC 2 cut(s) 89, 102
BspANI GGCC 2 cut(s) 88, 254
BspCNI CTCAG 2 cut(s) 73, 186
BspMAI CTGCAG 1 cut(s) 131
BspPI GGATC 3 cut(s) 310, 522, 555
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 5 cut(s) 302, 414, 480, 514, 547
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 5 cut(s) 22, 50, 203, 247, 287
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 3 cut(s) 60, 194, 257
BstF5I GGATG 2 cut(s) 164, 187
BstKTI GATC 5 cut(s) 305, 417, 483, 517, 550
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 5 cut(s) 302, 414, 480, 514, 547
BstNI CCWGG 1 cut(s) 607
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 538, 605
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 2 cut(s) 88, 254
BtsCI GGATG 2 cut(s) 164, 187
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 253, 310
CseI GACGC 1 cut(s) 221
CsiI ACCWGGT 1 cut(s) 605
Csp6I GTAC 2 cut(s) 46, 283
CviAII CATG 2 cut(s) 25, 524
CviJI RGCY 7 cut(s) 39, 65, 88, 254, 337, 386, 554
CviKI_1 RGCY 7 cut(s) 39, 65, 88, 254, 337, 386, 554
CviQI GTAC 2 cut(s) 46, 283
DdeI CTNAG 3 cut(s) 60, 194, 257
DpnI GATC 5 cut(s) 304, 416, 482, 516, 549
DpnII GATC 5 cut(s) 302, 414, 480, 514, 547
DraI TTTAAA 1 cut(s) 330
DraIII CACNNNGTG 1 cut(s) 609
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 310
Eco72I CACGTG 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 2 cut(s) 28, 527
FaiI YATR 4 cut(s) 26, 32, 525, 594
FaqI GGGAC 2 cut(s) 212, 419
FatI CATG 2 cut(s) 24, 523
Fnu4HI GCNGC 2 cut(s) 6, 89
FokI GGATG 2 cut(s) 171, 194
Fsp4HI GCNGC 2 cut(s) 6, 89
GluI GCNGC 2 cut(s) 6, 89
HaeIII GGCC 2 cut(s) 88, 254
HapII CCGG 1 cut(s) 539
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 28, 527
HincII GTYRAC 2 cut(s) 154, 454
HindII GTYRAC 2 cut(s) 154, 454
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 7 cut(s) 190, 358, 372, 455, 567, 577, 599
HpaII CCGG 1 cut(s) 539
HphI GGTGA 3 cut(s) 499, 544, 608
Hpy166II GTNNAC 2 cut(s) 154, 454
Hpy188I TCNGA 4 cut(s) 135, 195, 270, 371
Hpy188III TCNNGA 3 cut(s) 76, 431, 581
Hpy8I GTNNAC 2 cut(s) 154, 454
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 130, 293, 487
HpyCH4III ACNGT 5 cut(s) 22, 50, 203, 247, 287
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 129, 242
HpyF3I CTNAG 3 cut(s) 60, 194, 257
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 28, 527
Kzo9I GATC 5 cut(s) 302, 414, 480, 514, 547
LpnPI CCDG 9 cut(s) 47, 53, 155, 293, 326, 388, 444, 552, 592
Lsp1109I GCAGC 1 cut(s) 17
MabI ACCWGGT 1 cut(s) 605
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 118, 532
MalI GATC 5 cut(s) 304, 416, 482, 516, 549
MboI GATC 5 cut(s) 302, 414, 480, 514, 547
MboII GAAGA 3 cut(s) 48, 403, 502
MflI RGATCY 1 cut(s) 514
MluCI AATT 3 cut(s) 33, 165, 424
MlyI GAGTC 2 cut(s) 352, 449
MnlI CCTC 8 cut(s) 72, 75, 78, 98, 189, 244, 270, 505
MseI TTAA 2 cut(s) 329, 613
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 2 cut(s) 540, 607
MvaI CCWGG 1 cut(s) 607
NciI CCSGG 1 cut(s) 540
NdeII GATC 5 cut(s) 302, 414, 480, 514, 547
NlaIII CATG 2 cut(s) 28, 527
NmuCI GTSAC 1 cut(s) 532
PfeI GAWTC 5 cut(s) 190, 372, 567, 577, 599
PflMI CCANNNNNTGG 1 cut(s) 529
PkrI GCNGC 2 cut(s) 7, 90
PleI GAGTC 2 cut(s) 352, 449
PmaCI CACGTG 1 cut(s) 94
PmlI CACGTG 1 cut(s) 94
PpsI GAGTC 2 cut(s) 352, 449
Ppu21I YACGTR 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 605
PspCI CACGTG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 605
PspPI GGNCC 2 cut(s) 253, 310
PstI CTGCAG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 2 cut(s) 47, 284
RsaNI GTAC 2 cut(s) 46, 283
SaqAI TTAA 2 cut(s) 329, 613
SatI GCNGC 2 cut(s) 6, 89
Sau3AI GATC 5 cut(s) 302, 414, 480, 514, 547
Sau96I GGNCC 2 cut(s) 253, 310
SchI GAGTC 2 cut(s) 352, 449
ScrFI CCNGG 2 cut(s) 540, 607
SetI ASST 6 cut(s) 96, 109, 141, 153, 556, 611
SexAI ACCWGGT 1 cut(s) 605
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
Sse9I AATT 3 cut(s) 33, 165, 424
SsiI CCGC 2 cut(s) 89, 102
StyD4I CCNGG 2 cut(s) 538, 605
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 5 cut(s) 22, 50, 203, 247, 287
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 249, 582
TasI AATT 3 cut(s) 33, 165, 424
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 5 cut(s) 190, 372, 567, 577, 599
Tru1I TTAA 2 cut(s) 329, 613
Tru9I TTAA 2 cut(s) 329, 613
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 3 cut(s) 137, 171, 560
TspRI CASTG 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.