MD15G1219000.v1.1

LURP-one-related 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010195
Physical Location & Seq
Forward (+)
17706756 .. 17708679
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1219000.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGGGGCACAAGACAATATGATCATGCCTATAATTAGCAAGATGTACTGTTCGTCTTCTCAGACTGTGCTTGTCATAAGGAGGAGGCCACACGTGATAAACGGAGGTGGTTTTGTGGTTACGGATTGTAGTCAGAAGGTTTCTTTCAAGGTTGATGGATGTGGAATTCTGGGGAAAAAGGATGAGATGATTCTGAGGGACAGTGATGGAGATGCCTTGCTTCTTATTCGTCGAAAGGGTGCAATGGTCGAGGCCCTAAGCATTTATCGGAAATGGAAGGGGTATAGTTTAGACTACGAAGGATCACAGGATCAGATGGTTTTCTGTTTAAAACAGCCAAACTCGTGTTTGGCAACGACTCAAGCAATCAGAATCTCAACGAAAGCCACGAAAAACAAAGACTGGGACTTTGAGATCAAGGGCTATTTTCCTGATAAGGATTGTAGTATTGTTGACTCTAAGGGCAACACAATGGCACAGATCGGGGTGAAGAAGGAATTGATGGCGAGCAAGGATCTCTACCATGTTGTGGTGACACCAGGCATGGATCAAGCTTTCATCATTGGAGTCATTACGATTCTTGACTACATCTACGGTGAATCCACCAGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

205

Amino Acids

22.73

Weight (kDa)

8.61

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 22 - 195 4e-30 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 529
AclWI GGATC 4 cut(s) 310, 318, 522, 555
AcsI RAATTY 1 cut(s) 165
AcvI CACGTG 1 cut(s) 94
AdeI CACNNNGTG 1 cut(s) 609
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 529
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 2 cut(s) 538, 605
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
AlwI GGATC 4 cut(s) 310, 318, 522, 555
AoxI GGCC 2 cut(s) 86, 252
ApoI RAATTY 1 cut(s) 165
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 499, 544, 608
BaeGI GKGCMC 1 cut(s) 10
BauI CACGAG 1 cut(s) 343
BbrPI CACGTG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 4 cut(s) 149, 200, 310, 496
BciT130I CCWGG 2 cut(s) 540, 607
BclI TGATCA 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 540, 607
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 540, 607
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 540, 607
BseGI GGATG 2 cut(s) 164, 187
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 74, 185
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 10
BshFI GGCC 2 cut(s) 88, 254
BslFI GGGAC 2 cut(s) 212, 419
BslI CCNNNNNNNGG 1 cut(s) 529
BsmFI GGGAC 2 cut(s) 212, 419
BsnI GGCC 2 cut(s) 88, 254
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
BspANI GGCC 2 cut(s) 88, 254
BspCNI CTCAG 2 cut(s) 73, 186
BspPI GGATC 4 cut(s) 310, 318, 522, 555
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 407
BssMI GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 540, 607
Bst4CI ACNGT 4 cut(s) 50, 67, 203, 596
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 4 cut(s) 60, 194, 257, 459
BstF5I GGATG 2 cut(s) 164, 187
BstKTI GATC 7 cut(s) 24, 305, 313, 417, 483, 517, 550
BstMBI GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
BstNI CCWGG 2 cut(s) 540, 607
BstSCI CCNGG 2 cut(s) 538, 605
BstSLI GKGCMC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 2 cut(s) 88, 254
BtsCI GGATG 2 cut(s) 164, 187
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 253
CsiI ACCWGGT 1 cut(s) 605
Csp6I GTAC 1 cut(s) 46
CviAII CATG 3 cut(s) 25, 524, 544
CviJI RGCY 6 cut(s) 88, 254, 337, 386, 423, 554
CviKI_1 RGCY 6 cut(s) 88, 254, 337, 386, 423, 554
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 4 cut(s) 60, 194, 257, 459
DpnI GATC 7 cut(s) 23, 304, 312, 416, 482, 516, 549
DpnII GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
DraI TTTAAA 1 cut(s) 330
DraIII CACNNNGTG 1 cut(s) 609
Eco72I CACGTG 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 538, 605
FaeI CATG 3 cut(s) 28, 527, 547
FaiI YATR 7 cut(s) 20, 26, 32, 77, 285, 525, 545
FaqI GGGAC 2 cut(s) 212, 419
FatI CATG 3 cut(s) 24, 523, 543
FbaI TGATCA 1 cut(s) 21
FokI GGATG 2 cut(s) 171, 194
HaeIII GGCC 2 cut(s) 88, 254
Hin1II CATG 3 cut(s) 28, 527, 547
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 7 cut(s) 190, 358, 372, 455, 567, 577, 599
HphI GGTGA 3 cut(s) 499, 544, 608
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 6 cut(s) 63, 135, 195, 270, 315, 371
Hpy188III TCNNGA 2 cut(s) 431, 581
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 4 cut(s) 130, 271, 293, 487
HpyCH4III ACNGT 4 cut(s) 50, 67, 203, 596
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 242
HpyF3I CTNAG 4 cut(s) 60, 194, 257, 459
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 28, 527, 547
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
LpnPI CCDG 7 cut(s) 155, 293, 388, 444, 525, 552, 592
LweI GCATC 1 cut(s) 202
MabI ACCWGGT 1 cut(s) 605
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 118, 532
MalI GATC 7 cut(s) 23, 304, 312, 416, 482, 516, 549
MboI GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
MboII GAAGA 2 cut(s) 48, 502
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 3 cut(s) 33, 165, 497
MlyI GAGTC 3 cut(s) 352, 449, 576
MnlI CCTC 5 cut(s) 75, 78, 98, 189, 244
MseI TTAA 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 540, 607
MvaI CCWGG 2 cut(s) 540, 607
NdeII GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
NlaIII CATG 3 cut(s) 28, 527, 547
NmuCI GTSAC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PfeI GAWTC 4 cut(s) 190, 372, 577, 599
PflMI CCANNNNNTGG 1 cut(s) 529
PleI GAGTC 3 cut(s) 352, 449, 575
PmaCI CACGTG 1 cut(s) 94
PmlI CACGTG 1 cut(s) 94
PpsI GAGTC 3 cut(s) 352, 449, 575
Ppu21I YACGTR 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 538, 605
PspCI CACGTG 1 cut(s) 94
PspGI CCWGG 2 cut(s) 538, 605
PspPI GGNCC 1 cut(s) 253
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 329
Sau3AI GATC 7 cut(s) 21, 302, 310, 414, 480, 514, 547
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 3 cut(s) 352, 449, 576
ScrFI CCNGG 2 cut(s) 540, 607
SduI GDGCHC 1 cut(s) 10
SetI ASST 6 cut(s) 96, 109, 141, 153, 556, 611
SexAI ACCWGGT 1 cut(s) 605
SfaNI GCATC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
Sse9I AATT 3 cut(s) 33, 165, 497
StyD4I CCNGG 2 cut(s) 538, 605
TaaI ACNGT 4 cut(s) 50, 67, 203, 596
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 232, 249
TasI AATT 3 cut(s) 33, 165, 497
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 4 cut(s) 190, 372, 577, 599
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 547
TspGWI ACGGA 2 cut(s) 117, 137
TspRI CASTG 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 529
XapI RAATTY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.