Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010195

Physical Location & Seq

Genomic Coordinates Forward (+)

5202822 .. 5203656

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCAGCAAAAGACAATACCGTCATGCCTATAATTAGCAAGATGTACCGTTCGTCTTCTCAGGCTGTGCTTGTCGTGAGGAGGAGGCCGCACGTGATCAACGGAGGTGGTTTTGTGGTTACGGATTGTAGTCAGAAGGTTGCTTTCAAGGTTGACGGATGTGGAATTCTGGGGAAAAAGGATGAGATGATTCTGAGGGACAGTGATGGAGACGCCTTGCTTCTCTTTCGCCGAAAGGGTGCAACGGTTGAGGCCCTAAGCATTTATCGGAGATGGAGGGGGTACAGTTTAGACTATGAAGGATCGCAGGACCAGATGGTTTTCTGTTTAAAAGAGCCGAACTCGTGCTTGGCAAGGACTCGAGCAATCAGAATCTCAACGAAAGCCACAAAGAACAAAGACTGGGACTTTGAGATCAAGGGCAATTTTCCTGATAAGGATTGTTGTATTGTTGACTCCGAGGGCAAAACAATGGCACAGATCGGGGTGAAGAAGGAACTGATGGCAAGCGAGGATCTCTACCATGTCGTGGTGGCACCGGGAACGGATCAAGCTTTCGTTATTGGAGTCATTACGATTCTCGACTACATCTATGGTGAATCCACCAGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

205

Amino Acids

22.75

Weight (kDa)

8.63

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05910
fragaria_vesca	FvH4_1g08870 FvH4_1g08870
malus_domestica	MD02G1093800.v1.1 MD02G1094100.v1.1 MD15G1219000.v1.1
prunus_persica	Prupe.7G196900_v2.0.a1
pyrus_communis	pycom02g07410
rosa_chinensis	RchiOBHm_Chr2g0095331
rosa_laevigata	RLG00000016555
rosa_multiflora	Rmu_ssc0000183.1_g000033
rosa_roxburghii	Rroxscaffold_2G00146470
rosa_rugosa	Rorug02G0049500 Rorug02G0049500 Rorug02G0049600 Rorug02G0049700
rosa_samantha	Rh2AG097800 Rh2BG099000 Rh2CG101100 Rh2DG098700
rosa_wichuraiana	Rw2G007380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	529
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	3 cut(s)	310, 522, 555
AcsI	RAATTY	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	609
AfaI	GTAC	2 cut(s)	47, 284
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	1 cut(s)	554
AluI	AGCT	1 cut(s)	554
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	3 cut(s)	310, 522, 555
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	2 cut(s)	86, 252
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspS9I	GGNCC	2 cut(s)	253, 310
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	2 cut(s)	499, 608
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	535
BauI	CACGAG	1 cut(s)	343
BbrPI	CACGTG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	200, 267, 310, 496
BciT130I	CCWGG	1 cut(s)	607
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	204
BisI	GCNGC	2 cut(s)	6, 89
BlsI	GCNGC	2 cut(s)	7, 90
Bme1390I	CCNGG	2 cut(s)	540, 607
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	2 cut(s)	253, 310
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	2 cut(s)	540, 607
BmrI	ACTGGG	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
Bpu10I	CCTNAGC	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	164, 187
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	74, 185
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	2 cut(s)	94, 97
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	88, 254
BshNI	GGYRCC	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	212, 419
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	212, 419
BsnI	GGCC	2 cut(s)	88, 254
BsoBI	CYCGRG	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	88, 254
BspCNI	CTCAG	2 cut(s)	73, 186
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	3 cut(s)	310, 522, 555
BspT107I	GGYRCC	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	5 cut(s)	22, 50, 203, 247, 287
BstACI	GRCGYC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	60, 194, 257
BstF5I	GGATG	2 cut(s)	164, 187
BstKTI	GATC	6 cut(s)	99, 305, 417, 483, 517, 550
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
BstNI	CCWGG	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	538, 605
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	88, 254
BtsCI	GGATG	2 cut(s)	164, 187
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	253, 310
CseI	GACGC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	46, 283
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	2 cut(s)	25, 524
CviJI	RGCY	6 cut(s)	65, 88, 254, 337, 386, 554
CviKI_1	RGCY	6 cut(s)	65, 88, 254, 337, 386, 554
CviQI	GTAC	2 cut(s)	46, 283
DdeI	CTNAG	3 cut(s)	60, 194, 257
DpnI	GATC	6 cut(s)	98, 304, 416, 482, 516, 549
DpnII	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
DraI	TTTAAA	1 cut(s)	330
DraIII	CACNNNGTG	1 cut(s)	609
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	605
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	28, 527
FaiI	YATR	5 cut(s)	26, 32, 297, 525, 594
FaqI	GGGAC	2 cut(s)	212, 419
FatI	CATG	2 cut(s)	24, 523
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	6, 89
FokI	GGATG	2 cut(s)	171, 194
Fsp4HI	GCNGC	2 cut(s)	6, 89
GluI	GCNGC	2 cut(s)	6, 89
HaeIII	GGCC	2 cut(s)	88, 254
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	28, 527
HincII	GTYRAC	2 cut(s)	154, 454
HindII	GTYRAC	2 cut(s)	154, 454
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	7 cut(s)	190, 358, 372, 455, 567, 577, 599
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	499, 608
Hpy166II	GTNNAC	2 cut(s)	154, 454
Hpy188I	TCNGA	5 cut(s)	135, 195, 270, 371, 460
Hpy188III	TCNNGA	3 cut(s)	76, 431, 581
Hpy8I	GTNNAC	2 cut(s)	154, 454
HpyAV	CCTTC	3 cut(s)	130, 293, 487
HpyCH4III	ACNGT	5 cut(s)	22, 50, 203, 247, 287
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	60, 194, 257
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	28, 527
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
LpnPI	CCDG	8 cut(s)	47, 155, 293, 326, 388, 444, 552, 592
Lsp1109I	GCAGC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	605
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	6 cut(s)	98, 304, 416, 482, 516, 549
MboI	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
MboII	GAAGA	2 cut(s)	48, 502
MflI	RGATCY	1 cut(s)	514
MluCI	AATT	3 cut(s)	33, 165, 424
MlyI	GAGTC	3 cut(s)	352, 449, 576
MnlI	CCTC	9 cut(s)	72, 75, 78, 98, 189, 244, 270, 454, 505
MseI	TTAA	2 cut(s)	329, 613
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	540, 607
MvaI	CCWGG	1 cut(s)	607
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
NlaIII	CATG	2 cut(s)	28, 527
NlaIV	GGNNCC	1 cut(s)	537
PaeR7I	CTCGAG	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	190, 372, 577, 599
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	7, 90
PleI	GAGTC	3 cut(s)	352, 449, 575
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
PpsI	GAGTC	3 cut(s)	352, 449, 575
Ppu21I	YACGTR	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	605
PspCI	CACGTG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	253, 310
PspXI	VCTCGAGB	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	2 cut(s)	47, 284
RsaNI	GTAC	2 cut(s)	46, 283
SaqAI	TTAA	2 cut(s)	329, 613
SatI	GCNGC	2 cut(s)	6, 89
Sau3AI	GATC	6 cut(s)	96, 302, 414, 480, 514, 547
Sau96I	GGNCC	2 cut(s)	253, 310
SchI	GAGTC	3 cut(s)	352, 449, 576
ScrFI	CCNGG	2 cut(s)	540, 607
SetI	ASST	6 cut(s)	96, 109, 141, 153, 556, 611
SexAI	ACCWGGT	1 cut(s)	605
Sfr274I	CTCGAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	3 cut(s)	33, 165, 424
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	538, 605
TaaI	ACNGT	5 cut(s)	22, 50, 203, 247, 287
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	361, 582
TasI	AATT	3 cut(s)	33, 165, 424
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	4 cut(s)	190, 372, 577, 599
Tru1I	TTAA	2 cut(s)	329, 613
Tru9I	TTAA	2 cut(s)	329, 613
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	4 cut(s)	117, 137, 171, 560
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.