Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017912

Physical Location & Seq

Genomic Coordinates Reverse (-)

3312873 .. 3313502

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G07629.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTACAAAACTGGGTTTTGGAAGATATGGCACTAAAAGTTGTTTGGGTGTGCCCCGAAGTTAGGGCGAGTTATCTTATTATTGAGACTCTCGTTATGTCTTCTTGGGTAGACCTGCCTGCCGATACGGAGGGTAACGAGATTGCTCTCAATCCCTCCGTATCGTCGTTGTACAACGAAATAGAGAGTTCCGACTCTTTACGAGCACGGAATCGCCTATTGTCGGAGTCTTGGGAACGGGTCGAGGGGACGGAACGGGCCCTCCAGAACGAGGGGGATCCAGGCCGGCGTCGGGAATTAACCGCGCGCCTGGATCAGGAAATACGAGCCCTCCAACGACAAATCCATCTCGGTCGAAGAGCTGATTCCATTCGGGATCGGCAAATCGCCGAGTGGAGGGGAAGGTTTAATACGGAATTAGCAGGGATAGAGGAGGAAAGCGCACGCCGTGCGTTCCTTAATTGGTGTCTCCGTGTGCTCATCCATGCACACGAGGACCAACCTCCCCAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0019843 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

171

Amino Acids

19.83

Weight (kDa)

5.11

Isoelectric Point (pI)

68.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07629 AT2G07629 AT2G07674 AT2G07674 ATMG00670 ATMG00690 ATMG01010 ATMG01020 ATMG01200
pyrus_communis	pycom461g00010 pycom461g00330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	2 cut(s)	305, 307
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	4 cut(s)	272, 285, 321, 384
AcyI	GRCGYC	1 cut(s)	289
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	6, 173
AfiI	CCNNNNNNNGG	6 cut(s)	63, 223, 271, 292, 316, 396
AjnI	CCWGG	2 cut(s)	280, 309
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	2 cut(s)	208, 480
Alw26I	GTCTC	2 cut(s)	80, 473
AlwI	GGATC	4 cut(s)	272, 285, 321, 384
AoxI	GGCC	2 cut(s)	258, 283
ApaI	GGGCCC	1 cut(s)	262
AspLEI	GCGC	3 cut(s)	307, 309, 443
AspS9I	GGNCC	3 cut(s)	258, 259, 496
AvaII	GGWCC	1 cut(s)	496
BaeGI	GKGCMC	2 cut(s)	56, 262
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	262, 331
BarI	GAAGNNNNNNTAC	2 cut(s)	394, 426
BauI	CACGAG	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	208, 480
BccI	CCATC	1 cut(s)	354
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	2 cut(s)	282, 311
BcoDI	GTCTC	2 cut(s)	80, 473
BfuAI	ACCTGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	282, 311
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	3 cut(s)	258, 259, 496
BmiI	GGNNCC	2 cut(s)	260, 279
BmrFI	CCNGG	2 cut(s)	282, 311
BmrI	ACTGGG	1 cut(s)	22
BmuI	ACTGGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	289
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 315, 345
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 223, 271, 292, 316, 396
Bse118I	RCCGGY	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	282, 311
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	6 cut(s)	63, 223, 271, 292, 316, 396
BseNI	ACTGG	1 cut(s)	17
BsePI	GCGCGC	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	2 cut(s)	56, 262
Bsh1236I	CGCG	2 cut(s)	305, 307
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	260, 285
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	208, 480
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	6 cut(s)	63, 223, 271, 292, 316, 396
BsmAI	GTCTC	2 cut(s)	80, 473
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	260, 285
Bsp120I	GGGCCC	1 cut(s)	258
Bsp1286I	GDGCHC	5 cut(s)	56, 208, 262, 331, 480
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	277, 313, 376
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	2 cut(s)	260, 285
BspFNI	CGCG	2 cut(s)	305, 307
BspLI	GGNNCC	2 cut(s)	260, 279
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	4 cut(s)	272, 285, 321, 384
BspQI	GCTCTTC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	285
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	285
BssHII	GCGCGC	1 cut(s)	305
BssMI	GATC	3 cut(s)	277, 313, 376
BssNI	GRCGYC	1 cut(s)	289
BssSI	CACGAG	1 cut(s)	491
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	2 cut(s)	282, 311
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	120, 287, 307, 445
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	2 cut(s)	305, 307
BstHHI	GCGC	3 cut(s)	307, 309, 443
BstKTI	GATC	3 cut(s)	280, 316, 379
BstMAI	GTCTC	2 cut(s)	80, 473
BstMBI	GATC	3 cut(s)	277, 313, 376
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	2 cut(s)	282, 311
BstSCI	CCNGG	2 cut(s)	280, 309
BstSLI	GKGCMC	2 cut(s)	56, 262
BstUI	CGCG	2 cut(s)	305, 307
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	260, 285
BtsCI	GGATG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	4 cut(s)	120, 287, 307, 445
CfoI	GCGC	3 cut(s)	307, 309, 443
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	258, 259, 496
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	5, 172
CviAII	CATG	1 cut(s)	485
CviJI	RGCY	4 cut(s)	260, 285, 329, 362
CviKI_1	RGCY	4 cut(s)	260, 285, 329, 362
CviQI	GTAC	2 cut(s)	5, 172
DpnI	GATC	3 cut(s)	279, 315, 378
DpnII	GATC	3 cut(s)	277, 313, 376
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco24I	GRGCYC	2 cut(s)	262, 331
Eco47I	GGWCC	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	280, 309
EcoT38I	GRGCYC	2 cut(s)	262, 331
FaeI	CATG	1 cut(s)	488
FaiI	YATR	3 cut(s)	29, 98, 486
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	111
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	2 cut(s)	262, 331
GlaI	GCGC	3 cut(s)	306, 308, 442
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	260, 285
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	3 cut(s)	307, 309, 443
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	488
Hin6I	GCGC	3 cut(s)	305, 307, 441
HinP1I	GCGC	3 cut(s)	305, 307, 441
HinfI	GANTC	5 cut(s)	88, 194, 211, 227, 365
HpaII	CCGG	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	193, 226
Hpy188III	TCNNGA	4 cut(s)	265, 293, 317, 374
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	169, 294
HpyAV	CCTTC	1 cut(s)	396
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	1 cut(s)	488
HspAI	GCGC	3 cut(s)	305, 307, 441
KroI	GCCGGC	1 cut(s)	285
KroNI	GCCGGC	1 cut(s)	287
Kzo9I	GATC	3 cut(s)	277, 313, 376
LguI	GCTCTTC	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	279, 315, 378
MboI	GATC	3 cut(s)	277, 313, 376
MboII	GAAGA	3 cut(s)	35, 93, 369
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	5 cut(s)	56, 208, 262, 331, 480
MluCI	AATT	3 cut(s)	296, 416, 460
MlyI	GAGTC	3 cut(s)	82, 188, 236
MmeI	TCCRAC	3 cut(s)	204, 216, 358
MroNI	GCCGGC	1 cut(s)	285
MseI	TTAA	3 cut(s)	299, 408, 459
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	2 cut(s)	282, 311
MvaI	CCWGG	2 cut(s)	282, 311
MvnI	CGCG	2 cut(s)	305, 307
MwoI	GCNNNNNNNGC	1 cut(s)	449
NaeI	GCCGGC	1 cut(s)	287
NdeII	GATC	3 cut(s)	277, 313, 376
NgoMIV	GCCGGC	1 cut(s)	285
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	2 cut(s)	260, 279
NmeAIII	GCCGAG	1 cut(s)	415
PauI	GCGCGC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	352
PdiI	GCCGGC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	211, 365
PleI	GAGTC	3 cut(s)	82, 188, 235
PpsI	GAGTC	3 cut(s)	82, 188, 235
Psp6I	CCWGG	2 cut(s)	280, 309
PspGI	CCWGG	2 cut(s)	280, 309
PspN4I	GGNNCC	2 cut(s)	260, 279
PspOMI	GGGCCC	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	258, 259, 496
PsuI	RGATCY	1 cut(s)	277
PteI	GCGCGC	1 cut(s)	305
RsaI	GTAC	2 cut(s)	6, 173
RsaNI	GTAC	2 cut(s)	5, 172
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	299, 408, 459
Sau3AI	GATC	3 cut(s)	277, 313, 376
Sau96I	GGNCC	3 cut(s)	258, 259, 496
SchI	GAGTC	3 cut(s)	82, 188, 236
ScrFI	CCNGG	2 cut(s)	282, 311
SduI	GDGCHC	5 cut(s)	56, 208, 262, 331, 480
SetI	ASST	4 cut(s)	117, 364, 407, 505
SinI	GGWCC	1 cut(s)	496
Sse9I	AATT	3 cut(s)	296, 416, 460
SsiI	CCGC	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	280, 309
TaqI	TCGA	2 cut(s)	243, 355
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	296, 416, 460
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	211, 365
Tru1I	TTAA	3 cut(s)	299, 408, 459
Tru9I	TTAA	3 cut(s)	299, 408, 459
TspGWI	ACGGA	6 cut(s)	143, 148, 223, 266, 428, 461
VpaK11BI	GGWCC	1 cut(s)	496
XagI	CCTNNNNNAGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.