ATMG00670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017912
Physical Location & Seq
Reverse (-)
191055 .. 191882
828 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00670.1

Sequence Viewer

Length: 828 bp
ATGAAAAAATATAAAATGGTTATTAATATTGATATGCTTCGACTATTTTTGCCCCTCCTCGGTGGTTCCGTATCAGGTTCTTTATTCGGACGTTTTCTAGGATCAGAAGGAAGCGCTATAATGATCACTACGTGCGTTTCATTCTGTGCGCTAGTGGTATTTATATTTGGACTTTTTTACTTTCGTAAGAAAGGACCGCTGAAGAGGATTCTCTATCTCTTCTTAGTGGGGTTCGTGCTATCTTTGATCCGGATCAAAGTCGTCTATCTACTGGGTGGTCAGGCTTTGCCCCTGTTAGATCCCATTCTTATGTATGCAGTCGGAGCGGGAGCACTTCTGGGCCCTAACGGGGCTGAGAGCTCCGCCACGTGGGAGGAGGATTCCTTTGAACTGGACGTTCTCGGAGAATCATTCTCCTCCTCCAAAACGGACATGGACTCCCAGGTGGCGGAGGCGCCCCAAACGGAAGAGGGGGAACCCTCGGTAAATCAAGTGCCCCAGGAAGCTGGGGCATCTCATAGAGTGGGCCCCTATCAGGACCAGGGCCTAGCTACTGATAGGAATGGTAACCCGATAGATCTTAATGATTCGCTCCCCCCCTCTTCGTTGTTATACGGAGAAATAGAGAGTTCCGCCTCTGTGCGAGCGCGGGATCTCGAATTGGAGAAAGATATTAAGCGGGTCCAGAGGTTGACGCGGAACTTCGATAACGCGGAGGATCCCGCCCGTCGTCTGGAAGTAGCCGCGCGCCTGGATCCGGAGGTGCGCGAGCTAGATCAGAAGTGGGCACTCTTTCAAGAAAAGGATGCCTCCGGGCTAGGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.21

Weight (kDa)

4.92

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07629 AT2G07629 AT2G07674 AT2G07674 ATMG00670 ATMG00690 ATMG01010 ATMG01020 ATMG01200
pyrus_communis pycom461g00010 pycom461g00330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AccBSI CCGCTC 1 cut(s) 326
AccII CGCG 6 cut(s) 649, 697, 713, 746, 748, 768
AccIII TCCGGA 2 cut(s) 249, 757
AclWI GGATC 9 cut(s) 109, 241, 260, 293, 660, 713, 726, 749, 762
AcuI CTGAAG 1 cut(s) 221
AcvI CACGTG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 455
AdeI CACNNNGTG 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 7 cut(s) 59, 349, 369, 448, 535, 733, 757
AgsI TTSAA 2 cut(s) 389, 797
AjnI CCWGG 4 cut(s) 441, 498, 540, 750
AluBI AGCT 4 cut(s) 360, 506, 551, 772
AluI AGCT 4 cut(s) 360, 506, 551, 772
Alw21I GWGCWC 2 cut(s) 334, 362
AlwI GGATC 9 cut(s) 109, 241, 260, 293, 660, 713, 726, 749, 762
Aor13HI TCCGGA 2 cut(s) 249, 757
Aor51HI AGCGCT 1 cut(s) 115
AoxI GGCC 3 cut(s) 340, 526, 544
ApaI GGGCCC 2 cut(s) 344, 530
AseI ATTAAT 1 cut(s) 24
AspLEI GCGC 7 cut(s) 116, 151, 457, 649, 748, 750, 768
AspS9I GGNCC 8 cut(s) 194, 340, 341, 526, 527, 538, 544, 682
AsuC2I CCSGG 1 cut(s) 814
AvaII GGWCC 3 cut(s) 194, 538, 682
BaeGI GKGCMC 4 cut(s) 344, 498, 530, 790
BamHI GGATCC 2 cut(s) 718, 754
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 3 cut(s) 344, 362, 530
BbrPI CACGTG 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 334, 362
BciT130I CCWGG 4 cut(s) 443, 500, 542, 752
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 814
BfaI CTAG 5 cut(s) 98, 152, 548, 773, 818
BfoI RGCGCY 2 cut(s) 117, 458
BglII AGATCT 1 cut(s) 577
BisI GCNGC 1 cut(s) 744
BlsI GCNGC 1 cut(s) 745
Bme1390I CCNGG 5 cut(s) 443, 500, 542, 752, 814
Bme18I GGWCC 3 cut(s) 194, 538, 682
BmgT120I GGNCC 8 cut(s) 194, 340, 341, 526, 527, 538, 544, 682
BmiI GGNNCC 9 cut(s) 67, 342, 456, 477, 528, 529, 683, 720, 756
BmrFI CCNGG 5 cut(s) 443, 500, 542, 752, 814
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 521, 796
BmuI ACTGGG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 814
BsaAI YACGTR 2 cut(s) 132, 369
BsaBI GATNNNNATC 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 455
BsaJI CCNNGG 5 cut(s) 58, 441, 480, 498, 541
BsaWI WCCGGW 2 cut(s) 249, 757
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 7 cut(s) 59, 349, 369, 448, 535, 733, 757
Bse1I ACTGG 2 cut(s) 276, 396
Bse8I GATNNNNATC 1 cut(s) 251
BseAI TCCGGA 2 cut(s) 249, 757
BseBI CCWGG 4 cut(s) 443, 500, 542, 752
BseDI CCNNGG 5 cut(s) 58, 441, 480, 498, 541
BseGI GGATG 1 cut(s) 811
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 7 cut(s) 59, 349, 369, 448, 535, 733, 757
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 276, 396
BsePI GCGCGC 1 cut(s) 746
BseRI GAGGAG 4 cut(s) 47, 389, 406, 409
BseSI GKGCMC 4 cut(s) 344, 498, 530, 790
BseYI CCCAGC 1 cut(s) 506
Bsh1236I CGCG 6 cut(s) 649, 697, 713, 746, 748, 768
BshFI GGCC 3 cut(s) 342, 528, 546
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 2 cut(s) 334, 362
BsiSI CCGG 3 cut(s) 250, 758, 813
BslI CCNNNNNNNGG 7 cut(s) 59, 349, 369, 448, 535, 733, 757
BsnI GGCC 3 cut(s) 342, 528, 546
Bsp120I GGGCCC 2 cut(s) 340, 526
Bsp1286I GDGCHC 6 cut(s) 334, 344, 362, 498, 530, 790
Bsp13I TCCGGA 2 cut(s) 249, 757
BspANI GGCC 3 cut(s) 342, 528, 546
BspCNI CTCAG 1 cut(s) 346
BspEI TCCGGA 2 cut(s) 249, 757
BspFNI CGCG 6 cut(s) 649, 697, 713, 746, 748, 768
BspLI GGNNCC 9 cut(s) 67, 342, 456, 477, 528, 529, 683, 720, 756
BspPI GGATC 9 cut(s) 109, 241, 260, 293, 660, 713, 726, 749, 762
BspT107I GGYRCC 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 326
BsrI ACTGG 2 cut(s) 276, 396
BssECI CCNNGG 5 cut(s) 58, 441, 480, 498, 541
BssHII GCGCGC 1 cut(s) 746
BssNI GRCGYC 1 cut(s) 455
Bst2UI CCWGG 4 cut(s) 443, 500, 542, 752
Bst6I CTCTTC 4 cut(s) 197, 224, 462, 607
BstACI GRCGYC 1 cut(s) 455
BstBAI YACGTR 2 cut(s) 132, 369
BstC8I GCNNGC 3 cut(s) 645, 748, 770
BstDEI CTNAG 2 cut(s) 223, 354
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 1 cut(s) 811
BstFNI CGCG 6 cut(s) 649, 697, 713, 746, 748, 768
BstH2I RGCGCY 2 cut(s) 117, 458
BstHHI GCGC 7 cut(s) 116, 151, 457, 649, 748, 750, 768
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 4 cut(s) 443, 500, 542, 752
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 5 cut(s) 441, 498, 540, 750, 812
BstSLI GKGCMC 4 cut(s) 344, 498, 530, 790
BstUI CGCG 6 cut(s) 649, 697, 713, 746, 748, 768
BstX2I RGATCY 5 cut(s) 298, 577, 652, 718, 754
BstXI CCANNNNNNTGG 1 cut(s) 506
BstYI RGATCY 5 cut(s) 298, 577, 652, 718, 754
BsuRI GGCC 3 cut(s) 342, 528, 546
BtsCI GGATG 1 cut(s) 811
Cac8I GCNNGC 3 cut(s) 645, 748, 770
CfoI GCGC 7 cut(s) 116, 151, 457, 649, 748, 750, 768
Cfr13I GGNCC 8 cut(s) 194, 340, 341, 526, 527, 538, 544, 682
CseI GACGC 1 cut(s) 703
CviAII CATG 1 cut(s) 433
DdeI CTNAG 2 cut(s) 223, 354
DinI GGCGCC 1 cut(s) 456
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 4 cut(s) 197, 224, 462, 607
EarI CTCTTC 4 cut(s) 197, 224, 462, 607
EciI GGCGGA 3 cut(s) 352, 464, 622
Ecl136II GAGCTC 1 cut(s) 360
Eco24I GRGCYC 3 cut(s) 344, 362, 530
Eco47I GGWCC 3 cut(s) 194, 538, 682
Eco47III AGCGCT 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 360
EcoO109I RGGNCCY 3 cut(s) 341, 527, 544
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 4 cut(s) 441, 498, 540, 750
EcoT38I GRGCYC 3 cut(s) 344, 362, 530
EgeI GGCGCC 1 cut(s) 456
EheI GGCGCC 1 cut(s) 456
FaeI CATG 1 cut(s) 436
FaiI YATR 9 cut(s) 12, 35, 119, 164, 311, 315, 434, 519, 613
FatI CATG 1 cut(s) 432
FauI CCCGC 4 cut(s) 319, 642, 672, 730
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 744
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 3 cut(s) 344, 362, 530
Fsp4HI GCNGC 1 cut(s) 744
FspBI CTAG 5 cut(s) 98, 152, 548, 773, 818
GlaI GCGC 7 cut(s) 115, 150, 456, 648, 747, 749, 767
GluI GCNGC 1 cut(s) 744
GsaI CCCAGC 1 cut(s) 510
HaeII RGCGCY 2 cut(s) 117, 458
HaeIII GGCC 3 cut(s) 342, 528, 546
HapII CCGG 3 cut(s) 250, 758, 813
HgaI GACGC 1 cut(s) 703
HhaI GCGC 7 cut(s) 116, 151, 457, 649, 748, 750, 768
Hin1I GRCGYC 1 cut(s) 455
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 7 cut(s) 114, 149, 455, 647, 746, 748, 766
HinP1I GCGC 7 cut(s) 114, 149, 455, 647, 746, 748, 766
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HinfI GANTC 5 cut(s) 208, 380, 407, 437, 587
HpaII CCGG 3 cut(s) 250, 758, 813
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 5 cut(s) 89, 106, 323, 404, 780
Hpy188III TCNNGA 7 cut(s) 250, 536, 656, 685, 734, 758, 797
Hpy8I GTNNAC 1 cut(s) 693
Hpy99I CGWCG 1 cut(s) 732
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 4 cut(s) 91, 131, 368, 396
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 223, 354
HpySE526I ACGT 4 cut(s) 91, 131, 368, 396
Hsp92I GRCGYC 1 cut(s) 455
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 7 cut(s) 114, 149, 455, 647, 746, 748, 766
KasI GGCGCC 1 cut(s) 454
Kpn2I TCCGGA 2 cut(s) 249, 757
Ksp22I TGATCA 1 cut(s) 123
LmnI GCTCC 4 cut(s) 323, 329, 365, 597
LweI GCATC 2 cut(s) 521, 796
MaeI CTAG 5 cut(s) 98, 152, 548, 773, 818
MaeII ACGT 4 cut(s) 91, 131, 368, 396
MaeIII GTNAC 1 cut(s) 566
MbiI CCGCTC 1 cut(s) 326
MboII GAAGA 4 cut(s) 211, 214, 479, 594
MflI RGATCY 5 cut(s) 298, 577, 652, 718, 754
MhlI GDGCHC 6 cut(s) 334, 344, 362, 498, 530, 790
MluCI AATT 1 cut(s) 659
Mly113I GGCGCC 1 cut(s) 455
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 301
MroI TCCGGA 2 cut(s) 249, 757
MseI TTAA 3 cut(s) 24, 582, 675
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 3 cut(s) 250, 758, 813
MspR9I CCNGG 5 cut(s) 443, 500, 542, 752, 814
MvaI CCWGG 4 cut(s) 443, 500, 542, 752
MvnI CGCG 6 cut(s) 649, 697, 713, 746, 748, 768
MwoI GCNNNNNNNGC 1 cut(s) 323
NarI GGCGCC 1 cut(s) 455
NciI CCSGG 1 cut(s) 814
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 9 cut(s) 67, 342, 456, 477, 528, 529, 683, 720, 756
PauI GCGCGC 1 cut(s) 746
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 4 cut(s) 208, 380, 407, 587
PkrI GCNGC 1 cut(s) 745
PleI GAGTC 1 cut(s) 431
PluTI GGCGCC 1 cut(s) 458
PmaCI CACGTG 1 cut(s) 369
PmlI CACGTG 1 cut(s) 369
PpsI GAGTC 1 cut(s) 431
Ppu21I YACGTR 2 cut(s) 132, 369
PshBI ATTAAT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 4 cut(s) 441, 498, 540, 750
PspCI CACGTG 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 4 cut(s) 441, 498, 540, 750
PspN4I GGNNCC 9 cut(s) 67, 342, 456, 477, 528, 529, 683, 720, 756
PspOMI GGGCCC 2 cut(s) 340, 526
PspPI GGNCC 8 cut(s) 194, 340, 341, 526, 527, 538, 544, 682
PsuI RGATCY 5 cut(s) 298, 577, 652, 718, 754
PteI GCGCGC 1 cut(s) 746
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 362
SaqAI TTAA 3 cut(s) 24, 582, 675
SatI GCNGC 1 cut(s) 744
Sau96I GGNCC 8 cut(s) 194, 340, 341, 526, 527, 538, 544, 682
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 5 cut(s) 443, 500, 542, 752, 814
SduI GDGCHC 6 cut(s) 334, 344, 362, 498, 530, 790
SfaNI GCATC 2 cut(s) 521, 796
SfoI GGCGCC 1 cut(s) 456
SinI GGWCC 3 cut(s) 194, 538, 682
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 1 cut(s) 659
SspDI GGCGCC 1 cut(s) 454
SspI AATATT 1 cut(s) 28
SspMI CTAG 5 cut(s) 98, 152, 548, 773, 818
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 5 cut(s) 441, 498, 540, 750, 812
TaiI ACGT 4 cut(s) 94, 134, 371, 399
TaqI TCGA 3 cut(s) 40, 657, 705
TasI AATT 1 cut(s) 659
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 4 cut(s) 208, 380, 407, 587
Tru1I TTAA 3 cut(s) 24, 582, 675
Tru9I TTAA 3 cut(s) 24, 582, 675
TspDTI ATGAA 2 cut(s) 17, 129
TspGWI ACGGA 4 cut(s) 58, 443, 479, 630
VpaK11BI GGWCC 3 cut(s) 194, 538, 682
VspI ATTAAT 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XspI CTAG 5 cut(s) 98, 152, 548, 773, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.