AT2G07674

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017912
Physical Location & Seq
Forward (+)
3268932 .. 3269906
975 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07674.2

Sequence Viewer

Length: 756 bp
ATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCATCCACCTAGTGGGGGGTCTGGCTTTGCCCGTGTTGGGACCTTTGGTCTTGAATGCAATAGGGGGGCAAGCACTTCCTTCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCCTTTGAACTGGGAGTTCTCGAGGAATCCGACTCCCCCCCGGCAGGGGGGTCCCGAACGGAAGAGGGGGAACCCTCGGTAAATCAGGGCAGTCCCCTCCCGTCCCAAACAGAAGAGGGGGAACCCTCGGTAAATCAAGTGCCCCAGGAAGCTGGGCCTGCGCTTCCAGCTAATCCAGTCCCTCCCGGGGGGGAGGAAGCTGGGCCAGTAGTCCCCTATCCATACAGGAGGGATGAAATGATTGGGGGGGATAGCGTAGAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAAGGCTCTCCCTCTGCGGAGATCATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAGATCAAAGCCCAAATCATCCAACGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGATAATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGACCTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTCAAGAAAGGCGGCCCTGGGGGGGACCCTATCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

26.67

Weight (kDa)

4.3

Isoelectric Point (pI)

73.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8018 PF26057 205 - 309 5.7e-45 Domain of unknown function (DUF8018)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07629 AT2G07629 AT2G07674 AT2G07674 ATMG00670 ATMG00690 ATMG01010 ATMG01020 ATMG01200
pyrus_communis pycom461g00010 pycom461g00330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 46, 544
AccII CGCG 1 cut(s) 580
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 3 cut(s) 436, 473, 729
AclWI GGATC 3 cut(s) 16, 22, 35
AdeI CACNNNGTG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 88, 170
AhdI GACNNNNNGTC 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 2 cut(s) 306, 733
AluBI AGCT 3 cut(s) 314, 332, 362
AluI AGCT 3 cut(s) 314, 332, 362
AlwI GGATC 3 cut(s) 16, 22, 35
Ama87I CYCGRG 3 cut(s) 182, 347, 588
Aor13HI TCCGGA 1 cut(s) 24
AoxI GGCC 8 cut(s) 121, 317, 365, 489, 501, 591, 674, 730
ApaI GGGCCC 2 cut(s) 595, 678
Asp700I GAANNNNTTC 1 cut(s) 713
AspLEI GCGC 2 cut(s) 325, 580
AsuC2I CCSGG 5 cut(s) 130, 203, 348, 349, 673
AvaI CYCGRG 3 cut(s) 182, 347, 588
AvaII GGWCC 5 cut(s) 74, 213, 609, 658, 742
BaeGI GKGCMC 3 cut(s) 306, 595, 678
BanII GRGCYC 3 cut(s) 589, 595, 678
BccI CCATC 3 cut(s) 481, 538, 568
BciT130I CCWGG 2 cut(s) 308, 735
BcnI CCSGG 5 cut(s) 130, 203, 348, 349, 673
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 2 cut(s) 44, 615
BglII AGATCT 1 cut(s) 508
BisI GCNGC 2 cut(s) 436, 730
BlsI GCNGC 2 cut(s) 437, 731
Bme1390I CCNGG 7 cut(s) 130, 203, 308, 348, 349, 673, 735
Bme18I GGWCC 5 cut(s) 74, 213, 609, 658, 742
BmeRI GACNNNNNGTC 1 cut(s) 80
BmeT110I CYCGRG 3 cut(s) 182, 347, 588
BmrFI CCNGG 7 cut(s) 130, 203, 308, 348, 349, 673, 735
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 5 cut(s) 130, 203, 348, 349, 673
BsaBI GATNNNNATC 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 24
Bse118I RCCGGY 2 cut(s) 119, 563
Bse1I ACTGG 3 cut(s) 177, 338, 368
Bse8I GATNNNNATC 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 2 cut(s) 308, 735
BseGI GGATG 5 cut(s) 36, 400, 534, 549, 579
BseJI GATNNNNATC 1 cut(s) 26
BseNI ACTGG 3 cut(s) 177, 338, 368
BseSI GKGCMC 3 cut(s) 306, 595, 678
BseYI CCCAGC 2 cut(s) 314, 362
Bsh1236I CGCG 1 cut(s) 580
BshFI GGCC 8 cut(s) 123, 319, 367, 491, 503, 593, 676, 732
BsiHKCI CYCGRG 3 cut(s) 182, 347, 588
BsiSI CCGG 7 cut(s) 25, 120, 129, 203, 348, 564, 672
BslFI GGGAC 6 cut(s) 87, 199, 240, 250, 326, 359
BsmFI GGGAC 6 cut(s) 87, 199, 240, 250, 326, 359
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 8 cut(s) 123, 319, 367, 491, 503, 593, 676, 732
BsoBI CYCGRG 3 cut(s) 182, 347, 588
Bsp120I GGGCCC 2 cut(s) 591, 674
Bsp1286I GDGCHC 4 cut(s) 306, 589, 595, 678
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 6 cut(s) 14, 21, 27, 477, 508, 519
BspACI CCGC 3 cut(s) 436, 473, 729
BspANI GGCC 8 cut(s) 123, 319, 367, 491, 503, 593, 676, 732
BspEI TCCGGA 1 cut(s) 24
BspFNI CGCG 1 cut(s) 580
BspPI GGATC 3 cut(s) 16, 22, 35
BsrFI RCCGGY 2 cut(s) 119, 563
BsrI ACTGG 3 cut(s) 177, 338, 368
BssAI RCCGGY 2 cut(s) 119, 563
BssMI GATC 6 cut(s) 14, 21, 27, 477, 508, 519
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 308, 735
Bst6I CTCTTC 3 cut(s) 219, 270, 618
BstC8I GCNNGC 2 cut(s) 105, 321
BstF5I GGATG 5 cut(s) 36, 400, 534, 549, 579
BstFNI CGCG 1 cut(s) 580
BstHHI GCGC 2 cut(s) 325, 580
BstKTI GATC 6 cut(s) 17, 24, 30, 480, 511, 522
BstMBI GATC 6 cut(s) 14, 21, 27, 477, 508, 519
BstMWI GCNNNNNNNGC 3 cut(s) 320, 329, 584
BstNI CCWGG 2 cut(s) 308, 735
BstSCI CCNGG 7 cut(s) 128, 201, 306, 346, 347, 671, 733
BstSLI GKGCMC 3 cut(s) 306, 595, 678
BstUI CGCG 1 cut(s) 580
BstX2I RGATCY 2 cut(s) 14, 508
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 2 cut(s) 14, 508
BsuRI GGCC 8 cut(s) 123, 319, 367, 491, 503, 593, 676, 732
BtsCI GGATG 5 cut(s) 36, 400, 534, 549, 579
Cac8I GCNNGC 2 cut(s) 105, 321
CfoI GCGC 2 cut(s) 325, 580
Cfr10I RCCGGY 2 cut(s) 119, 563
Cfr9I CCCGGG 1 cut(s) 347
CseI GACGC 1 cut(s) 626
CviAII CATG 1 cut(s) 148
DpnI GATC 6 cut(s) 16, 23, 29, 479, 510, 521
DpnII GATC 6 cut(s) 14, 21, 27, 477, 508, 519
DraIII CACNNNGTG 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 3 cut(s) 219, 270, 618
Eam1105I GACNNNNNGTC 1 cut(s) 80
EarI CTCTTC 3 cut(s) 219, 270, 618
Eco130I CCWWGG 1 cut(s) 630
Eco24I GRGCYC 3 cut(s) 589, 595, 678
Eco47I GGWCC 5 cut(s) 74, 213, 609, 658, 742
Eco88I CYCGRG 3 cut(s) 182, 347, 588
EcoO109I RGGNCCY 6 cut(s) 74, 213, 592, 658, 675, 742
EcoRII CCWGG 2 cut(s) 306, 733
EcoT14I CCWWGG 1 cut(s) 630
EcoT38I GRGCYC 3 cut(s) 589, 595, 678
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 1 cut(s) 151
FaiI YATR 9 cut(s) 149, 385, 482, 553, 555, 645, 650, 652, 754
FaqI GGGAC 6 cut(s) 87, 199, 240, 250, 326, 359
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 436, 730
FokI GGATG 5 cut(s) 23, 407, 521, 556, 586
FriOI GRGCYC 3 cut(s) 589, 595, 678
Fsp4HI GCNGC 2 cut(s) 436, 730
FspBI CTAG 2 cut(s) 44, 615
GlaI GCGC 2 cut(s) 324, 579
GluI GCNGC 2 cut(s) 436, 730
GsaI CCCAGC 2 cut(s) 318, 366
HaeIII GGCC 8 cut(s) 123, 319, 367, 491, 503, 593, 676, 732
HapII CCGG 7 cut(s) 25, 120, 129, 203, 348, 564, 672
HgaI GACGC 1 cut(s) 626
HhaI GCGC 2 cut(s) 325, 580
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 323, 578
HinP1I GCGC 2 cut(s) 323, 578
HinfI GANTC 4 cut(s) 161, 188, 194, 626
HpaII CCGG 7 cut(s) 25, 120, 129, 203, 348, 564, 672
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 3 cut(s) 193, 606, 685
Hpy188III TCNNGA 6 cut(s) 25, 85, 182, 216, 517, 721
Hpy8I GTNNAC 1 cut(s) 701
HpyAV CCTTC 5 cut(s) 123, 135, 449, 452, 649
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 329, 584
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 323, 578
KflI GGGWCCC 2 cut(s) 213, 742
Kpn2I TCCGGA 1 cut(s) 24
Kzo9I GATC 6 cut(s) 14, 21, 27, 477, 508, 519
LmnI GCTCC 1 cut(s) 634
MaeI CTAG 2 cut(s) 44, 615
MalI GATC 6 cut(s) 16, 23, 29, 479, 510, 521
MboI GATC 6 cut(s) 14, 21, 27, 477, 508, 519
MboII GAAGA 6 cut(s) 135, 170, 236, 287, 518, 635
MflI RGATCY 2 cut(s) 14, 508
MhlI GDGCHC 4 cut(s) 306, 589, 595, 678
MlyI GAGTC 2 cut(s) 188, 635
MmeI TCCRAC 2 cut(s) 216, 562
MroI TCCGGA 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 713
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 7 cut(s) 25, 120, 129, 203, 348, 564, 672
MspR9I CCNGG 7 cut(s) 130, 203, 308, 348, 349, 673, 735
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 2 cut(s) 308, 735
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 3 cut(s) 320, 329, 584
NciI CCSGG 5 cut(s) 130, 203, 348, 349, 673
NdeII GATC 6 cut(s) 14, 21, 27, 477, 508, 519
NlaIII CATG 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 182
PasI CCCWGGG 1 cut(s) 734
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 713
PfeI GAWTC 2 cut(s) 161, 188
PflMI CCANNNNNTGG 2 cut(s) 46, 544
PkrI GCNGC 2 cut(s) 437, 731
PleI GAGTC 2 cut(s) 188, 634
PpsI GAGTC 2 cut(s) 188, 634
PpuMI RGGWCCY 4 cut(s) 74, 213, 658, 742
Psp5II RGGWCCY 4 cut(s) 74, 213, 658, 742
Psp6I CCWGG 2 cut(s) 306, 733
PspFI CCCAGC 2 cut(s) 314, 362
PspGI CCWGG 2 cut(s) 306, 733
PspOMI GGGCCC 2 cut(s) 591, 674
PspPPI RGGWCCY 4 cut(s) 74, 213, 658, 742
PsuI RGATCY 2 cut(s) 14, 508
RseI CAYNNNNRTG 1 cut(s) 485
SatI GCNGC 2 cut(s) 436, 730
Sau3AI GATC 6 cut(s) 14, 21, 27, 477, 508, 519
SchI GAGTC 2 cut(s) 188, 635
ScrFI CCNGG 7 cut(s) 130, 203, 308, 348, 349, 673, 735
SduI GDGCHC 4 cut(s) 306, 589, 595, 678
SetI ASST 6 cut(s) 45, 79, 316, 334, 364, 663
Sfr274I CTCGAG 1 cut(s) 182
SinI GGWCC 5 cut(s) 74, 213, 609, 658, 742
SlaI CTCGAG 1 cut(s) 182
SmaI CCCGGG 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 2 cut(s) 182, 719
SmoI CTYRAG 2 cut(s) 182, 719
SpeI ACTAGT 1 cut(s) 614
SsiI CCGC 3 cut(s) 436, 473, 729
SspMI CTAG 2 cut(s) 44, 615
StyD4I CCNGG 7 cut(s) 128, 201, 306, 346, 347, 671, 733
StyI CCWWGG 1 cut(s) 630
TaqI TCGA 4 cut(s) 30, 183, 516, 597
TauI GCSGC 2 cut(s) 438, 732
TfiI GAWTC 2 cut(s) 161, 188
TspDTI ATGAA 1 cut(s) 411
TspGWI ACGGA 2 cut(s) 236, 556
TspMI CCCGGG 1 cut(s) 347
Van91I CCANNNNNTGG 2 cut(s) 46, 544
VpaK11BI GGWCC 5 cut(s) 74, 213, 609, 658, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XhoI CTCGAG 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 713
XspI CTAG 2 cut(s) 44, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.