ATMG01010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017912
Physical Location & Seq
Reverse (-)
261105 .. 261461
357 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG01010.1

Sequence Viewer

Length: 357 bp
ATGATTGGGGGGGATAGCGTAGAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAAGGCTCTCCCTCTGCGGAGATCATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAGATCAAAGCCCAAATCATCCAACGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGATAATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGACCTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTCAAGAAAGGCGGCCCTGGGGGGGACCCTATCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

4.59

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8018 PF26057 1 - 103 4.4e-45 Domain of unknown function (DUF8018)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07629 AT2G07629 AT2G07674 AT2G07674 ATMG00670 ATMG00690 ATMG01010 ATMG01020 ATMG01200
pyrus_communis pycom461g00010 pycom461g00330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 145
AccII CGCG 1 cut(s) 181
AciI CCGC 3 cut(s) 37, 74, 330
AfiI CCNNNNNNNGG 6 cut(s) 43, 100, 145, 171, 219, 340
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 5 cut(s) 90, 102, 192, 275, 331
ApaI GGGCCC 2 cut(s) 196, 279
Asp700I GAANNNNTTC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 9 cut(s) 91, 192, 193, 210, 259, 275, 276, 332, 343
AsuC2I CCSGG 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 3 cut(s) 210, 259, 343
BaeGI GKGCMC 2 cut(s) 196, 279
BanII GRGCYC 3 cut(s) 190, 196, 279
BccI CCATC 3 cut(s) 82, 139, 169
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 1 cut(s) 274
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 109
BisI GCNGC 2 cut(s) 37, 331
BlsI GCNGC 2 cut(s) 38, 332
Bme1390I CCNGG 2 cut(s) 274, 336
Bme18I GGWCC 3 cut(s) 210, 259, 343
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 9 cut(s) 91, 192, 193, 210, 259, 275, 276, 332, 343
BmiI GGNNCC 5 cut(s) 194, 277, 278, 344, 345
BmrFI CCNGG 2 cut(s) 274, 336
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 274
BsaJI CCNNGG 4 cut(s) 206, 231, 334, 335
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 100, 145, 171, 219, 340
Bse118I RCCGGY 1 cut(s) 164
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 4 cut(s) 206, 231, 334, 335
BseGI GGATG 3 cut(s) 135, 150, 180
BseLI CCNNNNNNNGG 6 cut(s) 43, 100, 145, 171, 219, 340
BseSI GKGCMC 2 cut(s) 196, 279
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 5 cut(s) 92, 104, 194, 277, 333
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 165, 273
BslI CCNNNNNNNGG 6 cut(s) 43, 100, 145, 171, 219, 340
BsnI GGCC 5 cut(s) 92, 104, 194, 277, 333
BsoBI CYCGRG 1 cut(s) 189
Bsp120I GGGCCC 2 cut(s) 192, 275
Bsp1286I GDGCHC 3 cut(s) 190, 196, 279
Bsp143I GATC 3 cut(s) 78, 109, 120
BspACI CCGC 3 cut(s) 37, 74, 330
BspANI GGCC 5 cut(s) 92, 104, 194, 277, 333
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 5 cut(s) 194, 277, 278, 344, 345
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 4 cut(s) 206, 231, 334, 335
BssMI GATC 3 cut(s) 78, 109, 120
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 219
BstF5I GGATG 3 cut(s) 135, 150, 180
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 3 cut(s) 81, 112, 123
BstMBI GATC 3 cut(s) 78, 109, 120
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 272, 334
BstSLI GKGCMC 2 cut(s) 196, 279
BstUI CGCG 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 5 cut(s) 92, 104, 194, 277, 333
BtsCI GGATG 3 cut(s) 135, 150, 180
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 9 cut(s) 91, 192, 193, 210, 259, 275, 276, 332, 343
CseI GACGC 1 cut(s) 227
CviJI RGCY 9 cut(s) 63, 92, 104, 128, 149, 188, 194, 277, 333
CviKI_1 RGCY 9 cut(s) 63, 92, 104, 128, 149, 188, 194, 277, 333
DpnI GATC 3 cut(s) 80, 111, 122
DpnII GATC 3 cut(s) 78, 109, 120
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 3 cut(s) 190, 196, 279
Eco47I GGWCC 3 cut(s) 210, 259, 343
Eco88I CYCGRG 1 cut(s) 189
EcoO109I RGGNCCY 4 cut(s) 193, 259, 276, 343
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 3 cut(s) 190, 196, 279
ErhI CCWWGG 1 cut(s) 231
FaiI YATR 7 cut(s) 83, 154, 156, 246, 251, 253, 355
Fnu4HI GCNGC 2 cut(s) 37, 331
FokI GGATG 3 cut(s) 122, 157, 187
FriOI GRGCYC 3 cut(s) 190, 196, 279
Fsp4HI GCNGC 2 cut(s) 37, 331
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 37, 331
HaeIII GGCC 5 cut(s) 92, 104, 194, 277, 333
HapII CCGG 2 cut(s) 165, 273
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 181
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 165, 273
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 207, 286
Hpy188III TCNNGA 2 cut(s) 118, 322
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 50, 53, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HspAI GCGC 1 cut(s) 179
KflI GGGWCCC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 78, 109, 120
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 29, 178, 286, 321, 348
MaeI CTAG 1 cut(s) 216
MalI GATC 3 cut(s) 80, 111, 122
MboI GATC 3 cut(s) 78, 109, 120
MboII GAAGA 2 cut(s) 119, 236
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 3 cut(s) 190, 196, 279
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 8 cut(s) 16, 79, 94, 201, 206, 272, 290, 329
MroXI GAANNNNTTC 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 2 cut(s) 165, 273
MspR9I CCNGG 2 cut(s) 274, 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 274
NdeII GATC 3 cut(s) 78, 109, 120
NlaIV GGNNCC 5 cut(s) 194, 277, 278, 344, 345
PasI CCCWGGG 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 2 cut(s) 38, 332
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 2 cut(s) 259, 343
Psp5II RGGWCCY 2 cut(s) 259, 343
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 5 cut(s) 194, 277, 278, 344, 345
PspOMI GGGCCC 2 cut(s) 192, 275
PspPI GGNCC 9 cut(s) 91, 192, 193, 210, 259, 275, 276, 332, 343
PspPPI RGGWCCY 2 cut(s) 259, 343
PsuI RGATCY 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 2 cut(s) 37, 331
Sau3AI GATC 3 cut(s) 78, 109, 120
Sau96I GGNCC 9 cut(s) 91, 192, 193, 210, 259, 275, 276, 332, 343
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 274, 336
SduI GDGCHC 3 cut(s) 190, 196, 279
SetI ASST 1 cut(s) 264
SinI GGWCC 3 cut(s) 210, 259, 343
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 215
SsiI CCGC 3 cut(s) 37, 74, 330
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 272, 334
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 2 cut(s) 117, 198
TauI GCSGC 2 cut(s) 39, 333
TspGWI ACGGA 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 3 cut(s) 210, 259, 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.