ATMG00690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017912
Physical Location & Seq
Reverse (-)
203588 .. 204310
723 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00690.1

Sequence Viewer

Length: 723 bp
ATGCGTAGTAGCGTTCTAAGATCACTGAGGGGAAGGTTGGTCATAAATTTGGAGAGTACACGGAAACTCAGACTTTCGAGAACAAATATTGTACCGGGAAGAAAAAAGGGACAGAAATCCATAAAGTCAAAAAATATGGCACGAAAAGGAAATCCGATTTTGGTAAGACTTGGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGCCGAGGCACTGTTAGGGTGTTTATACTTTTTTATATATTTCGTAGCCCCAACATTGGGGCCTGTTCTGTTTCTACTGCGATTAATACATTTTGTTTGGGGGCTGAGGTTGGGATTGGGAAATGAGAACTTTCATTTTGGCGTTGGGCCTGATGGCGGCGCGACTGGTCTCGATCTCAACCAGCCGCCCCAAGAGCAGCAGCCCACCCTAGGAGTCAATCGTGCTGCTCTCGATCTCAACGAGCTTCCTCCAGTACATTTATTGTACGCAGAGGTCGAGGGCCCCCAGTCTACGAAGGCGCAAAATGACGTAATGTTAGCTCATCTAAATCAAGTACAAAACTTAACTAGGGACCTCCAGACTGAGCCTAATATCTGGCGTCGTCAGGCGTTGATAGATATACTGGACTGGGAGGTCAGAAGCCTCCAGCGCCATTTTCGTATCTTTCGCCAGCGAGATCGACTCAGGGAGGTCCAAAGGTCCTGGTTGCGCGAGCAGCTAAATCGTTATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.68

Weight (kDa)

11.18

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07629 AT2G07629 AT2G07674 AT2G07674 ATMG00670 ATMG00690 ATMG01010 ATMG01020 ATMG01200
pyrus_communis pycom461g00010 pycom461g00330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 497
AccII CGCG 2 cut(s) 368, 699
AciI CCGC 2 cut(s) 363, 392
AcsI RAATTY 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 586
AfaI GTAC 5 cut(s) 58, 93, 462, 473, 543
AfiI CCNNNNNNNGG 4 cut(s) 262, 263, 362, 416
AgsI TTSAA 1 cut(s) 195
AjnI CCWGG 1 cut(s) 689
AluBI AGCT 3 cut(s) 451, 527, 706
AluI AGCT 3 cut(s) 451, 527, 706
Alw26I GTCTC 1 cut(s) 380
AoxI GGCC 3 cut(s) 266, 353, 487
ApaI GGGCCC 1 cut(s) 491
ApeKI GCWGC 4 cut(s) 403, 406, 431, 703
ApoI RAATTY 1 cut(s) 46
AseI ATTAAT 1 cut(s) 290
AspA2I CCTAGG 1 cut(s) 415
AspLEI GCGC 4 cut(s) 368, 508, 639, 699
AspS9I GGNCC 7 cut(s) 266, 353, 487, 488, 559, 679, 687
AsuC2I CCSGG 1 cut(s) 96
AvaII GGWCC 3 cut(s) 559, 679, 687
AvrII CCTAGG 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 491
BbvCI CCTCAGC 1 cut(s) 311
BbvI GCAGC 4 cut(s) 415, 418, 418, 715
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 1 cut(s) 692
BciT130I CCWGG 1 cut(s) 691
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 2 cut(s) 416, 555
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 6 cut(s) 364, 392, 404, 407, 432, 704
BlnI CCTAGG 1 cut(s) 415
BlsI GCNGC 6 cut(s) 365, 393, 405, 408, 433, 705
Bme1390I CCNGG 2 cut(s) 96, 691
Bme18I GGWCC 3 cut(s) 559, 679, 687
BmgT120I GGNCC 7 cut(s) 266, 353, 487, 488, 559, 679, 687
BmiI GGNNCC 4 cut(s) 267, 489, 490, 560
BmrFI CCNGG 2 cut(s) 96, 691
BmrI ACTGGG 2 cut(s) 487, 625
BmuI ACTGGG 2 cut(s) 487, 625
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpmI CTGGAG 3 cut(s) 441, 548, 617
Bpu10I CCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 718
BsaHI GRCGYC 1 cut(s) 586
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 210, 415
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 263, 362, 416
Bse1I ACTGG 5 cut(s) 376, 458, 493, 615, 620
BseBI CCWGG 1 cut(s) 691
BseCI ATCGAT 1 cut(s) 718
BseDI CCNNGG 2 cut(s) 210, 415
BseLI CCNNNNNNNGG 4 cut(s) 262, 263, 362, 416
BseMII CTCAG 5 cut(s) 17, 82, 302, 561, 685
BseNI ACTGG 5 cut(s) 376, 458, 493, 615, 620
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 4 cut(s) 415, 418, 418, 715
Bsh1236I CGCG 2 cut(s) 368, 699
BshFI GGCC 3 cut(s) 268, 355, 489
BshVI ATCGAT 1 cut(s) 718
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 123, 572
BslI CCNNNNNNNGG 4 cut(s) 262, 263, 362, 416
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 2 cut(s) 123, 572
BsnI GGCC 3 cut(s) 268, 355, 489
Bso31I GGTCTC 1 cut(s) 380
Bsp120I GGGCCC 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 4 cut(s) 20, 379, 439, 664
BspACI CCGC 2 cut(s) 363, 392
BspANI GGCC 3 cut(s) 268, 355, 489
BspCNI CTCAG 5 cut(s) 18, 81, 303, 562, 684
BspDI ATCGAT 1 cut(s) 718
BspFNI CGCG 2 cut(s) 368, 699
BspLI GGNNCC 4 cut(s) 267, 489, 490, 560
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 5 cut(s) 376, 458, 493, 615, 620
BssECI CCNNGG 2 cut(s) 210, 415
BssMI GATC 4 cut(s) 20, 379, 439, 664
BssNI GRCGYC 1 cut(s) 586
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 691
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 586
BstC8I GCNNGC 2 cut(s) 659, 701
BstDEI CTNAG 6 cut(s) 17, 26, 68, 311, 570, 671
BstFNI CGCG 2 cut(s) 368, 699
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 4 cut(s) 368, 508, 639, 699
BstKTI GATC 4 cut(s) 23, 382, 442, 667
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 4 cut(s) 20, 379, 439, 664
BstMWI GCNNNNNNNGC 3 cut(s) 400, 636, 703
BstNI CCWGG 1 cut(s) 691
BstSCI CCNGG 2 cut(s) 94, 689
BstSLI GKGCMC 1 cut(s) 491
BstUI CGCG 2 cut(s) 368, 699
BstV1I GCAGC 4 cut(s) 415, 418, 418, 715
Bsu15I ATCGAT 1 cut(s) 718
BsuRI GGCC 3 cut(s) 268, 355, 489
BsuTUI ATCGAT 1 cut(s) 718
BtsIMutI CAGTG 3 cut(s) 23, 211, 215
Cac8I GCNNGC 2 cut(s) 659, 701
CfoI GCGC 4 cut(s) 368, 508, 639, 699
Cfr13I GGNCC 7 cut(s) 266, 353, 487, 488, 559, 679, 687
ClaI ATCGAT 1 cut(s) 718
CseI GACGC 1 cut(s) 575
Csp6I GTAC 5 cut(s) 57, 92, 461, 472, 542
CviQI GTAC 5 cut(s) 57, 92, 461, 472, 542
DdeI CTNAG 6 cut(s) 17, 26, 68, 311, 570, 671
DpnI GATC 4 cut(s) 22, 381, 441, 666
DpnII GATC 4 cut(s) 20, 379, 439, 664
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 3 cut(s) 559, 679, 687
EcoO109I RGGNCCY 5 cut(s) 266, 487, 488, 559, 687
EcoRII CCWGG 1 cut(s) 689
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 415
FaiI YATR 7 cut(s) 44, 122, 137, 232, 242, 244, 608
FaqI GGGAC 2 cut(s) 123, 572
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 6 cut(s) 364, 392, 404, 407, 432, 704
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 6 cut(s) 364, 392, 404, 407, 432, 704
FspBI CTAG 2 cut(s) 416, 555
GlaI GCGC 4 cut(s) 367, 507, 638, 698
GluI GCNGC 6 cut(s) 364, 392, 404, 407, 432, 704
GsuI CTGGAG 3 cut(s) 441, 548, 617
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 3 cut(s) 268, 355, 489
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 575
HhaI GCGC 4 cut(s) 368, 508, 639, 699
Hin1I GRCGYC 1 cut(s) 586
Hin6I GCGC 4 cut(s) 366, 506, 637, 697
HinP1I GCGC 4 cut(s) 366, 506, 637, 697
HinfI GANTC 3 cut(s) 191, 420, 669
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 59, 498
Hpy188I TCNGA 4 cut(s) 71, 156, 190, 626
Hpy188III TCNNGA 4 cut(s) 78, 377, 437, 565
Hpy8I GTNNAC 2 cut(s) 59, 498
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 2 cut(s) 27, 496
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 3 cut(s) 400, 636, 703
HpyF3I CTNAG 6 cut(s) 17, 26, 68, 311, 570, 671
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 586
HspAI GCGC 4 cut(s) 366, 506, 637, 697
Kzo9I GATC 4 cut(s) 20, 379, 439, 664
Lsp1109I GCAGC 4 cut(s) 415, 418, 418, 715
MaeI CTAG 2 cut(s) 416, 555
MaeII ACGT 1 cut(s) 516
MalI GATC 4 cut(s) 22, 381, 441, 666
MboI GATC 4 cut(s) 20, 379, 439, 664
MboII GAAGA 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 1 cut(s) 46
MlyI GAGTC 2 cut(s) 429, 663
MseI TTAA 2 cut(s) 290, 551
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 96, 691
MvaI CCWGG 1 cut(s) 691
MvnI CGCG 2 cut(s) 368, 699
MwoI GCNNNNNNNGC 3 cut(s) 400, 636, 703
NciI CCSGG 1 cut(s) 96
NdeII GATC 4 cut(s) 20, 379, 439, 664
NlaIV GGNNCC 4 cut(s) 267, 489, 490, 560
NmeAIII GCCGAG 1 cut(s) 235
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 480
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 6 cut(s) 365, 393, 405, 408, 433, 705
PleI GAGTC 2 cut(s) 428, 663
PpsI GAGTC 2 cut(s) 428, 663
PpuMI RGGWCCY 2 cut(s) 559, 687
PshBI ATTAAT 1 cut(s) 290
Psp5II RGGWCCY 2 cut(s) 559, 687
Psp6I CCWGG 1 cut(s) 689
PspGI CCWGG 1 cut(s) 689
PspN4I GGNNCC 4 cut(s) 267, 489, 490, 560
PspOMI GGGCCC 1 cut(s) 487
PspPI GGNCC 7 cut(s) 266, 353, 487, 488, 559, 679, 687
PspPPI RGGWCCY 2 cut(s) 559, 687
RsaI GTAC 5 cut(s) 58, 93, 462, 473, 543
RsaNI GTAC 5 cut(s) 57, 92, 461, 472, 542
SaqAI TTAA 2 cut(s) 290, 551
SatI GCNGC 6 cut(s) 364, 392, 404, 407, 432, 704
Sau3AI GATC 4 cut(s) 20, 379, 439, 664
Sau96I GGNCC 7 cut(s) 266, 353, 487, 488, 559, 679, 687
SchI GAGTC 2 cut(s) 429, 663
ScrFI CCNGG 2 cut(s) 96, 691
SduI GDGCHC 1 cut(s) 491
SinI GGWCC 3 cut(s) 559, 679, 687
Sse9I AATT 1 cut(s) 46
SsiI CCGC 2 cut(s) 363, 392
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 416, 555
StyD4I CCNGG 2 cut(s) 94, 689
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 519
TaqI TCGA 6 cut(s) 77, 378, 438, 483, 667, 718
TasI AATT 1 cut(s) 46
TatI WGTACW 3 cut(s) 56, 460, 541
TauI GCSGC 2 cut(s) 366, 394
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 290, 551
Tru9I TTAA 2 cut(s) 290, 551
TscAI CASTG 3 cut(s) 30, 211, 222
TseI GCWGC 4 cut(s) 403, 406, 431, 703
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 3 cut(s) 30, 211, 222
VpaK11BI GGWCC 3 cut(s) 559, 679, 687
VspI ATTAAT 1 cut(s) 290
XapI RAATTY 1 cut(s) 46
XmaJI CCTAGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 497
XspI CTAG 2 cut(s) 416, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.