ATMG01020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017912
Physical Location & Seq
Reverse (-)
261617 .. 262078
462 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG01020.1

Sequence Viewer

Length: 462 bp
ATGAAAAATATGGTTCGACTGTTGTTGCCCCTGCTCGGAGCTTTGGCAGGTAGTTTTTGCGCCCGTTTTCTAGGATCAGAAGGAAGCGCTATAATGACCACTACGCGCGTTTCATTCTCTTCGATCTTAGTCGTAAGCTTCCTATTTTGCTTTCATTTTCATTCCTTTCGTTTGAAAGGGCCGCAGAAAAAGATTATCTATCTCTTTTTGGTCTTTTCCATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCATCCACCTAGTGGGGGGTCTGGCTTTGCCCGTGTTGGGACCTTTGGTCTTGAATGCAATAGGGGGGCAAGCACTTCCTTCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCCTTTGAACTGGGAGTTCTCGAGGAATCCGACTCCCCCCCGGCAGGGGGTCCCGAACGGAAGAGGGGGAACCCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.33

Weight (kDa)

9.18

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07629 AT2G07629 AT2G07674 AT2G07674 ATMG00670 ATMG00690 ATMG01010 ATMG01020 ATMG01200
pyrus_communis pycom461g00010 pycom461g00330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 2 cut(s) 106, 108
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 1 cut(s) 182
AclWI GGATC 4 cut(s) 82, 235, 241, 254
AdeI CACNNNGTG 1 cut(s) 265
AfeI AGCGCT 1 cut(s) 88
AfiI CCNNNNNNNGG 9 cut(s) 35, 265, 268, 290, 338, 425, 426, 427, 428
AgsI TTSAA 3 cut(s) 175, 307, 389
AhdI GACNNNNNGTC 1 cut(s) 299
AluBI AGCT 2 cut(s) 41, 138
AluI AGCT 2 cut(s) 41, 138
AlwI GGATC 4 cut(s) 82, 235, 241, 254
Ama87I CYCGRG 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 243
Aor51HI AGCGCT 1 cut(s) 88
AoxI GGCC 2 cut(s) 179, 340
AspLEI GCGC 3 cut(s) 62, 89, 108
AspS9I GGNCC 4 cut(s) 179, 293, 341, 431
AsuC2I CCSGG 2 cut(s) 349, 422
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 2 cut(s) 293, 431
BcnI CCSGG 2 cut(s) 349, 422
BfaI CTAG 2 cut(s) 71, 263
BfoI RGCGCY 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 349, 422
Bme18I GGWCC 2 cut(s) 293, 431
BmeRI GACNNNNNGTC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 4 cut(s) 179, 293, 341, 431
BmiI GGNNCC 4 cut(s) 294, 432, 433, 452
BmrFI CCNGG 2 cut(s) 349, 422
BmrI ACTGGG 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 349, 422
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 219, 420, 455
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 265, 268, 290, 338, 425, 426, 427, 428
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 219, 420, 455
BseGI GGATG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 9 cut(s) 35, 265, 268, 290, 338, 425, 426, 427, 428
BseNI ACTGG 1 cut(s) 396
Bsh1236I CGCG 2 cut(s) 106, 108
BshFI GGCC 2 cut(s) 181, 342
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 4 cut(s) 244, 339, 348, 422
BslFI GGGAC 2 cut(s) 306, 417
BslI CCNNNNNNNGG 9 cut(s) 35, 265, 268, 290, 338, 425, 426, 427, 428
BsmFI GGGAC 2 cut(s) 306, 417
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 181, 342
BsoBI CYCGRG 1 cut(s) 401
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 5 cut(s) 74, 123, 233, 240, 246
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 182
BspANI GGCC 2 cut(s) 181, 342
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 2 cut(s) 106, 108
BspLI GGNNCC 4 cut(s) 294, 432, 433, 452
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 4 cut(s) 82, 235, 241, 254
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 219, 420, 455
BssMI GATC 5 cut(s) 74, 123, 233, 240, 246
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 2 cut(s) 124, 437
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 106, 108
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 3 cut(s) 62, 89, 108
BstKTI GATC 5 cut(s) 77, 126, 236, 243, 249
BstMBI GATC 5 cut(s) 74, 123, 233, 240, 246
BstSCI CCNGG 2 cut(s) 347, 420
BstUI CGCG 2 cut(s) 106, 108
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 2 cut(s) 181, 342
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 3 cut(s) 62, 89, 108
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 4 cut(s) 179, 293, 341, 431
CviAII CATG 2 cut(s) 220, 367
CviJI RGCY 5 cut(s) 41, 138, 181, 278, 342
CviKI_1 RGCY 5 cut(s) 41, 138, 181, 278, 342
DdeI CTNAG 1 cut(s) 127
DpnI GATC 5 cut(s) 76, 125, 235, 242, 248
DpnII GATC 5 cut(s) 74, 123, 233, 240, 246
DraIII CACNNNGTG 1 cut(s) 265
DriI GACNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 2 cut(s) 124, 437
Eam1105I GACNNNNNGTC 1 cut(s) 299
EarI CTCTTC 2 cut(s) 124, 437
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 293, 431
Eco47III AGCGCT 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 401
EcoO109I RGGNCCY 2 cut(s) 293, 431
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 223, 370
FaiI YATR 4 cut(s) 11, 92, 221, 368
FaqI GGGAC 2 cut(s) 306, 417
FatI CATG 2 cut(s) 219, 366
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 2 cut(s) 71, 263
GlaI GCGC 3 cut(s) 61, 88, 107
GluI GCNGC 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 2 cut(s) 181, 342
HapII CCGG 4 cut(s) 244, 339, 348, 422
HhaI GCGC 3 cut(s) 62, 89, 108
Hin1II CATG 2 cut(s) 223, 370
Hin6I GCGC 3 cut(s) 60, 87, 106
HinP1I GCGC 3 cut(s) 60, 87, 106
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 3 cut(s) 380, 407, 413
HpaII CCGG 4 cut(s) 244, 339, 348, 422
Hpy188I TCNGA 3 cut(s) 38, 79, 412
Hpy188III TCNNGA 4 cut(s) 244, 304, 401, 434
HpyAV CCTTC 3 cut(s) 74, 342, 354
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 311
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 2 cut(s) 223, 370
HspAI GCGC 3 cut(s) 60, 87, 106
KflI GGGWCCC 1 cut(s) 431
Kpn2I TCCGGA 1 cut(s) 243
Kzo9I GATC 5 cut(s) 74, 123, 233, 240, 246
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 9 cut(s) 33, 44, 257, 260, 352, 361, 377, 411, 435
MaeI CTAG 2 cut(s) 71, 263
MalI GATC 5 cut(s) 76, 125, 235, 242, 248
MboI GATC 5 cut(s) 74, 123, 233, 240, 246
MboII GAAGA 4 cut(s) 111, 354, 389, 454
MflI RGATCY 1 cut(s) 233
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 3 cut(s) 367, 397, 438
MroI TCCGGA 1 cut(s) 243
MspI CCGG 4 cut(s) 244, 339, 348, 422
MspR9I CCNGG 2 cut(s) 349, 422
Mva1269I GAATGC 1 cut(s) 313
MvnI CGCG 2 cut(s) 106, 108
NciI CCSGG 2 cut(s) 349, 422
NcoI CCATGG 1 cut(s) 219
NdeII GATC 5 cut(s) 74, 123, 233, 240, 246
NlaIII CATG 2 cut(s) 223, 370
NlaIV GGNNCC 4 cut(s) 294, 432, 433, 452
PaeR7I CTCGAG 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 380, 407
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PpuMI RGGWCCY 2 cut(s) 293, 431
Psp5II RGGWCCY 2 cut(s) 293, 431
PspN4I GGNNCC 4 cut(s) 294, 432, 433, 452
PspPI GGNCC 4 cut(s) 179, 293, 341, 431
PspPPI RGGWCCY 2 cut(s) 293, 431
PsuI RGATCY 1 cut(s) 233
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 5 cut(s) 74, 123, 233, 240, 246
Sau96I GGNCC 4 cut(s) 179, 293, 341, 431
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 2 cut(s) 349, 422
SetI ASST 5 cut(s) 43, 52, 140, 264, 298
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 2 cut(s) 293, 431
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SsiI CCGC 1 cut(s) 182
SspMI CTAG 2 cut(s) 71, 263
StyD4I CCNGG 2 cut(s) 347, 420
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 4 cut(s) 16, 122, 249, 402
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 2 cut(s) 380, 407
TspDTI ATGAA 4 cut(s) 17, 102, 143, 149
TspGWI ACGGA 1 cut(s) 454
Van91I CCANNNNNTGG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 293, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 401
XspI CTAG 2 cut(s) 71, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.