Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017912

Physical Location & Seq

Genomic Coordinates Reverse (-)

303836 .. 304720

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG01200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATTACTCGGCTGTTCGCCCAACTGGTATCGTTATCAATTGTAACTTATTGGAATGACGCTATTGTTGCGACAAACTTTTCCTGGCTCTTCATAACTTTCTTTGTTATGACTTTCACCTTTCGTACCTTCTCGCGCTACTTCAAAAAACCGATCATTTGGACTTTATATTTTTTTTTATGTTTAATAGCCTTTCTCCTTCTTTGGGCAGCCCGAATCCATATAAATATCCTTTTCTCATTTGCTTTTGGAGATGTTTATAGCTTCTTCATGGCAGGGGTGTTCTTGTTTTATGGTTTCGGGGAATTGCTGCCCATCGGATCAGATTCCGATGTTGGTGAGGCAAGTTGGGTCGTAAACCCTGCTACAGGGGCGAGCGGTAGTGGGGGGAACGGCTGGACTGAGTCTGCTGCAAATGATCCGGCAAGGGAAGTTTCCCTCGCCCCCTTTCCTCCGCAACTTACACATCCCGTGCCCTTTCCTGCCGAACCTGGCTCTCCGGACCCGGTTTCTCCCCCTCCCCCCATAGCCTCGTTCTACTCCCGAATAGAAAGGGCTGAGTCCTTACACGCCGGAAATATAGAATTGGCGGAGGATCTACAACGGATCCAGGAAATGGAACGTAACCTGGAGAACGAGAGGTCTCCCTACCGTGGGCGGGAACTAGCCGCCCGCATCGATTGGGAGGTGCGCGAGCTGGAGGGAAAAGTGGCGCGCAATCGCGCCTGGGATATGGTACGAGATGCTCAACTCGACATATGGAGGCAGGGGCTTGATCAGGAATTAGTAAGGCAACAGGAGAATGAGTCCCGCCTCGAAGAAAGAAGGTTTCAGTCTCATTCAACCAACTCTCTTTTTGAAGCAGATAGTTCACGAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

294

Amino Acids

33.61

Weight (kDa)

4.93

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07629 AT2G07629 AT2G07674 AT2G07674 ATMG00670 ATMG00690 ATMG01010 ATMG01020 ATMG01200
pyrus_communis	pycom461g00010 pycom461g00330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccBSI	CCGCTC	1 cut(s)	378
AccII	CGCG	4 cut(s)	136, 693, 715, 723
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	7 cut(s)	378, 455, 590, 658, 669, 673, 811
AclWI	GGATC	5 cut(s)	328, 413, 601, 603, 614
AfaI	GTAC	2 cut(s)	127, 738
AfiI	CCNNNNNNNGG	6 cut(s)	205, 368, 616, 653, 654, 658
AgsI	TTSAA	3 cut(s)	145, 843, 860
AjnI	CCWGG	5 cut(s)	83, 490, 609, 627, 725
AluBI	AGCT	2 cut(s)	264, 697
AluI	AGCT	2 cut(s)	264, 697
Alw26I	GTCTC	2 cut(s)	648, 840
AlwI	GGATC	5 cut(s)	328, 413, 601, 603, 614
Aor13HI	TCCGGA	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	209, 310, 410
AspLEI	GCGC	5 cut(s)	138, 693, 715, 717, 725
AspS9I	GGNCC	1 cut(s)	502
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	109, 350
AvaII	GGWCC	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	606
BauI	CACGAG	1 cut(s)	873
BbvI	GCAGC	3 cut(s)	221, 297, 397
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	5 cut(s)	85, 492, 611, 629, 727
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	648, 840
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	4 cut(s)	210, 311, 411, 669
BlsI	GCNGC	4 cut(s)	211, 312, 412, 670
Bme1390I	CCNGG	6 cut(s)	85, 492, 506, 611, 629, 727
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	504, 608
BmrFI	CCNGG	6 cut(s)	85, 492, 506, 611, 629, 727
BmsI	GCATC	2 cut(s)	684, 733
BpmI	CTGGAG	2 cut(s)	650, 719
BpuMI	CCSGG	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	652, 726
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 368, 616, 653, 654, 658
Bse1I	ACTGG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	5 cut(s)	85, 492, 611, 629, 727
BseCI	ATCGAT	1 cut(s)	678
BseDI	CCNNGG	2 cut(s)	652, 726
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	6 cut(s)	205, 368, 616, 653, 654, 658
BseMII	CTCAG	2 cut(s)	393, 549
BseNI	ACTGG	1 cut(s)	30
BsePI	GCGCGC	1 cut(s)	713
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	3 cut(s)	221, 297, 397
Bsh1236I	CGCG	4 cut(s)	136, 693, 715, 723
BshVI	ATCGAT	1 cut(s)	678
BsiSI	CCGG	4 cut(s)	422, 500, 506, 573
BslFI	GGGAC	1 cut(s)	793
BslI	CCNNNNNNNGG	6 cut(s)	205, 368, 616, 653, 654, 658
BsmAI	GTCTC	2 cut(s)	648, 840
BsmFI	GGGAC	1 cut(s)	793
Bso31I	GGTCTC	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
BspACI	CCGC	7 cut(s)	378, 455, 590, 658, 669, 673, 811
BspCNI	CTCAG	2 cut(s)	394, 550
BspDI	ATCGAT	1 cut(s)	678
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	4 cut(s)	136, 693, 715, 723
BspLI	GGNNCC	2 cut(s)	504, 608
BspPI	GGATC	5 cut(s)	328, 413, 601, 603, 614
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	652, 726
BssHII	GCGCGC	1 cut(s)	713
BssMI	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
BssSI	CACGAG	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	873
Bst2UI	CCWGG	5 cut(s)	85, 492, 611, 629, 727
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	376, 673, 695, 715
BstDEI	CTNAG	2 cut(s)	402, 558
BstDSI	CCRYGG	1 cut(s)	652
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	4 cut(s)	136, 693, 715, 723
BstHHI	GCGC	5 cut(s)	138, 693, 715, 717, 725
BstKTI	GATC	6 cut(s)	156, 323, 421, 598, 609, 778
BstMAI	GTCTC	2 cut(s)	648, 840
BstMBI	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 371
BstNI	CCWGG	5 cut(s)	85, 492, 611, 629, 727
BstSCI	CCNGG	6 cut(s)	83, 490, 504, 609, 627, 725
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	477
BstUI	CGCG	4 cut(s)	136, 693, 715, 723
BstV1I	GCAGC	3 cut(s)	221, 297, 397
BstX2I	RGATCY	2 cut(s)	595, 606
BstYI	RGATCY	2 cut(s)	595, 606
Bsu15I	ATCGAT	1 cut(s)	678
BsuTUI	ATCGAT	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	1 cut(s)	466
Cac8I	GCNNGC	4 cut(s)	376, 673, 695, 715
CfoI	GCGC	5 cut(s)	138, 693, 715, 717, 725
Cfr13I	GGNCC	1 cut(s)	502
ClaI	ATCGAT	1 cut(s)	678
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	126, 737
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	2 cut(s)	126, 737
DdeI	CTNAG	2 cut(s)	402, 558
DpnI	GATC	6 cut(s)	155, 322, 420, 597, 608, 777
DpnII	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRII	CCWGG	5 cut(s)	83, 490, 609, 627, 725
FaeI	CATG	1 cut(s)	274
FaqI	GGGAC	1 cut(s)	793
FatI	CATG	1 cut(s)	270
FauI	CCCGC	3 cut(s)	651, 680, 818
FauNDI	CATATG	1 cut(s)	758
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	4 cut(s)	210, 311, 411, 669
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	4 cut(s)	210, 311, 411, 669
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	5 cut(s)	137, 692, 714, 716, 724
GluI	GCNGC	4 cut(s)	210, 311, 411, 669
GsuI	CTGGAG	2 cut(s)	650, 719
HapII	CCGG	4 cut(s)	422, 500, 506, 573
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	5 cut(s)	138, 693, 715, 717, 725
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	5 cut(s)	136, 691, 713, 715, 723
HinP1I	GCGC	5 cut(s)	136, 691, 713, 715, 723
HinfI	GANTC	5 cut(s)	216, 326, 404, 560, 806
HpaII	CCGG	4 cut(s)	422, 500, 506, 573
HphI	GGTGA	2 cut(s)	109, 350
Hpy166II	GTNNAC	2 cut(s)	358, 872
Hpy188I	TCNGA	3 cut(s)	320, 325, 331
Hpy188III	TCNNGA	4 cut(s)	500, 543, 779, 873
Hpy8I	GTNNAC	2 cut(s)	358, 872
HpyAV	CCTTC	3 cut(s)	139, 209, 819
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 371
HpyF3I	CTNAG	2 cut(s)	402, 558
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	5 cut(s)	136, 691, 713, 715, 723
Kpn2I	TCCGGA	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
LguI	GCTCTTC	1 cut(s)	95
Lsp1109I	GCAGC	3 cut(s)	221, 297, 397
LweI	GCATC	2 cut(s)	684, 733
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	43, 623
MalI	GATC	6 cut(s)	155, 322, 420, 597, 608, 777
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
MboII	GAAGA	3 cut(s)	82, 259, 830
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	2 cut(s)	595, 606
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	5 cut(s)	39, 305, 584, 782, 880
MlyI	GAGTC	3 cut(s)	413, 569, 815
MroI	TCCGGA	1 cut(s)	499
MseI	TTAA	1 cut(s)	185
MspI	CCGG	4 cut(s)	422, 500, 506, 573
MspR9I	CCNGG	6 cut(s)	85, 492, 506, 611, 629, 727
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	5 cut(s)	85, 492, 611, 629, 727
MvnI	CGCG	4 cut(s)	136, 693, 715, 723
MwoI	GCNNNNNNNGC	2 cut(s)	68, 371
NciI	CCSGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	758
NdeII	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	504, 608
PauI	GCGCGC	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	216, 326
PflFI	GACNNNGTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	616
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	4 cut(s)	211, 312, 412, 670
PleI	GAGTC	3 cut(s)	412, 568, 814
PpsI	GAGTC	3 cut(s)	412, 568, 814
Psp6I	CCWGG	5 cut(s)	83, 490, 609, 627, 725
PspGI	CCWGG	5 cut(s)	83, 490, 609, 627, 725
PspN4I	GGNNCC	2 cut(s)	504, 608
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	595, 606
PsyI	GACNNNGTC	1 cut(s)	403
PteI	GCGCGC	1 cut(s)	713
RsaI	GTAC	2 cut(s)	127, 738
RsaNI	GTAC	2 cut(s)	126, 737
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	4 cut(s)	210, 311, 411, 669
Sau3AI	GATC	6 cut(s)	153, 320, 418, 595, 606, 775
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	3 cut(s)	413, 569, 815
ScrFI	CCNGG	6 cut(s)	85, 492, 506, 611, 629, 727
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	684, 733
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	502
Sse9I	AATT	5 cut(s)	39, 305, 584, 782, 880
SsiI	CCGC	7 cut(s)	378, 455, 590, 658, 669, 673, 811
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	6 cut(s)	83, 490, 504, 609, 627, 725
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	3 cut(s)	678, 753, 816
TasI	AATT	5 cut(s)	39, 305, 584, 782, 880
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	216, 326
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseI	GCWGC	3 cut(s)	209, 310, 410
TspDTI	ATGAA	2 cut(s)	82, 259
TspGWI	ACGGA	1 cut(s)	619
Tth111I	GACNNNGTC	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	502
XagI	CCTNNNNNAGG	1 cut(s)	366
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.