AT2G07675

Ribosomal protein S12/S23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010742
Physical Location & Seq
Forward (+)
3270410 .. 3270787
378 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07675.1

Sequence Viewer

Length: 378 bp
ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTTGGATAAATGTCCCCAGAAAACAGGAGTATGCCCGCGTGTTTCAACGAGAACACCGAAAAAACCTAATTCCGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATCCCGGGCGAAGGTCATAATTCGCAGGAACATTCTACGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTAAAATCCCATTGTATTCGAGGAGTAAAGGATTTGATGGGAATTCCGGGTCGAAGAAGAGGCAGATCAAAATATGGTGCAGAAAAACCCAAATCGATATGA

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

11.39

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosom_S12_S23 PF00164 18 - 123 1.4e-31 Ribosomal protein S12/S23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 1 cut(s) 106
AciI CCGC 2 cut(s) 104, 141
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 2 cut(s) 61, 165
AfiI CCNNNNNNNGG 2 cut(s) 165, 209
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Ama87I CYCGRG 2 cut(s) 63, 202
ApoI RAATTY 1 cut(s) 318
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 3 cut(s) 203, 204, 324
AvaI CYCGRG 2 cut(s) 63, 202
AvaII GGWCC 1 cut(s) 55
BccI CCATC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 273
BcnI CCSGG 3 cut(s) 203, 204, 324
Bme1390I CCNGG 4 cut(s) 203, 204, 273, 324
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 2 cut(s) 63, 202
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 4 cut(s) 203, 204, 273, 324
BpuMI CCSGG 3 cut(s) 203, 204, 324
Bsa29I ATCGAT 1 cut(s) 371
BsaAI YACGTR 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 209
BseBI CCWGG 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 165, 209
BseRI GAGGAG 2 cut(s) 264, 312
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 371
BsiHKCI CYCGRG 2 cut(s) 63, 202
BsiSI CCGG 2 cut(s) 203, 323
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 165, 209
BsmFI GGGAC 1 cut(s) 66
BsoBI CYCGRG 2 cut(s) 63, 202
Bsp143I GATC 1 cut(s) 341
BspACI CCGC 2 cut(s) 104, 141
BspDI ATCGAT 1 cut(s) 371
BspFNI CGCG 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 59, 168, 238
Bst6I CTCTTC 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 4 cut(s) 201, 202, 271, 322
BstUI CGCG 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 371
BsuTUI ATCGAT 1 cut(s) 371
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 104
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 55
Cfr9I CCCGGG 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 371
CpoI CGGWCCG 1 cut(s) 55
Csp6I GTAC 2 cut(s) 60, 164
CspI CGGWCCG 1 cut(s) 55
CviAII CATG 2 cut(s) 29, 182
CviJI RGCY 2 cut(s) 68, 158
CviKI_1 RGCY 2 cut(s) 68, 158
CviQI GTAC 2 cut(s) 60, 164
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 55
Eco88I CYCGRG 2 cut(s) 63, 202
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 2 cut(s) 32, 185
FaiI YATR 7 cut(s) 30, 100, 183, 188, 216, 351, 376
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 28, 181
FauI CCCGC 1 cut(s) 111
FokI GGATG 1 cut(s) 185
GlaI GCGC 1 cut(s) 50
HapII CCGG 2 cut(s) 203, 323
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 32, 185
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 2 cut(s) 22, 266
HpaII CCGG 2 cut(s) 203, 323
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 3 cut(s) 59, 168, 238
HpyCH4IV ACGT 2 cut(s) 8, 148
HpyCH4V TGCA 1 cut(s) 356
HpySE526I ACGT 2 cut(s) 8, 148
Hsp92II CATG 2 cut(s) 32, 185
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 341
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 78, 98, 209, 216, 258, 285, 336
MaeII ACGT 2 cut(s) 8, 148
MalI GATC 1 cut(s) 343
MbiI CCGCTC 1 cut(s) 143
MboI GATC 1 cut(s) 341
MboII GAAGA 3 cut(s) 50, 342, 345
MfeI CAATTG 1 cut(s) 17
MluCI AATT 4 cut(s) 17, 136, 217, 318
MnlI CCTC 4 cut(s) 242, 245, 290, 329
MseI TTAA 2 cut(s) 12, 242
MspI CCGG 2 cut(s) 203, 323
MspR9I CCNGG 4 cut(s) 203, 204, 273, 324
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 106
NciI CCSGG 3 cut(s) 203, 204, 324
NdeII GATC 1 cut(s) 341
NlaIII CATG 2 cut(s) 32, 185
PaeR7I CTCGAG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 2 cut(s) 22, 266
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspPI GGNCC 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 63
RsaI GTAC 2 cut(s) 61, 165
RsaNI GTAC 2 cut(s) 60, 164
Rsr2I CGGWCCG 1 cut(s) 55
RsrII CGGWCCG 1 cut(s) 55
SaqAI TTAA 2 cut(s) 12, 242
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 4 cut(s) 203, 204, 273, 324
SetI ASST 7 cut(s) 11, 70, 136, 151, 214, 256, 277
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 55
SlaI CTCGAG 1 cut(s) 63
SmaI CCCGGG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 4 cut(s) 17, 136, 217, 318
SsiI CCGC 2 cut(s) 104, 141
StyD4I CCNGG 4 cut(s) 201, 202, 271, 322
TaaI ACNGT 3 cut(s) 59, 168, 238
TaiI ACGT 2 cut(s) 11, 151
TaqI TCGA 5 cut(s) 64, 178, 295, 328, 371
TasI AATT 4 cut(s) 17, 136, 217, 318
TfiI GAWTC 2 cut(s) 22, 266
Tru1I TTAA 2 cut(s) 12, 242
Tru9I TTAA 2 cut(s) 12, 242
TspGWI ACGGA 1 cut(s) 68
TspMI CCCGGG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 63
XmaI CCCGGG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.