Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027070.1

Orthogroup ID

OG0010742

Physical Location & Seq

Genomic Coordinates Reverse (-)

7442 .. 10311

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027070.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgtaccgcatagcttcatccttcgcctcttcaactcctaagaagctgctggtcctcggcggtagtagggtttcatccaataggaactatgtggcgcaaggtctcaccttccacattgggcctcgcgccgccttgtttgaggttgacgacgctgccaagttcaccatggccgctctcctgcaacgcgtctctcacctcgcggaggcctacggagttaccatgggatcaaaggatgccaagggcattggttgttatgaggacaagtacaagaatgcgagcgaaacgcttgcgaaacaggctactaatactgctggaggagatggtacaacttctgcagctgtcttgacccaggcaacagtcagagagttttgccagtccataggtgctagggttataagtgaagataaaagtttcagtatcgacagagtgctcatgtcacccacattaaatcaattgattcgtcataatagaactgagaaaagtcgcacgaaccgtaatcgagctttggataaatgcccccaaaagcaaggagtatgcctacgggtttttacgagaacgcccaagaagccaaattcagctctgcgtaaggtagccaaagtaaggctaagcaatcgaaatgatgtattttcttacattccaggtgaaggtcataatttgcaggaacattctatggtcttaataagagggggcagagtgaaagatttgccaggtgtgaagttccattgtatcagaggagttaaggatttgctgggacttccaaaccgaaggagaggccgatcaaaatatggcgcagagaagcccaagagtgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

270

Amino Acids

29.64

Weight (kDa)

10.33

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07675 ATMG00980
rosa_chinensis	RchiOBHm_Chr5g0080691 RchiOBHm_MTg0498391
rosa_laevigata	RLG00000000021 RLG00000000075 RLG00000000129 RLG00000000466 RLG00000000505 RLG00000036886
rosa_multiflora	Rmu_sc0002380.1_g000012 Rmu_sc0027070.1_g000003
rosa_rugosa	Rorug05G0471500 Rorug05G0471600
rosa_samantha	Rh5AG524700 Rh5BG546800 Rh5CG570200 Rh5DG557000
rosa_wichuraiana	Rw5G048660 Rw5G049230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	3 cut(s)	126, 186, 200
AciI	CCGC	5 cut(s)	7, 60, 129, 171, 200
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	571
AfaI	GTAC	3 cut(s)	5, 266, 325
AfiI	CCNNNNNNNGG	3 cut(s)	202, 600, 644
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	33
AjnI	CCWGG	3 cut(s)	348, 637, 706
AluBI	AGCT	5 cut(s)	14, 46, 338, 503, 578
AluI	AGCT	5 cut(s)	14, 46, 338, 503, 578
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	107, 193
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	4 cut(s)	119, 168, 204, 772
ApeKI	GCWGC	3 cut(s)	46, 152, 335
ApoI	RAATTY	1 cut(s)	571
AspLEI	GCGC	3 cut(s)	97, 128, 791
AspS9I	GGNCC	2 cut(s)	52, 119
AsuHPI	GGTGA	5 cut(s)	97, 154, 185, 429, 653
AvaII	GGWCC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	33, 139, 347
BccI	CCATC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	3 cut(s)	350, 639, 708
BcoDI	GTCTC	2 cut(s)	107, 193
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	5 cut(s)	47, 129, 153, 171, 336
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	5 cut(s)	48, 130, 154, 172, 337
Bme1390I	CCNGG	3 cut(s)	350, 639, 708
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	52, 119
BmrFI	CCNGG	3 cut(s)	350, 639, 708
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	55, 165, 219, 237, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 600, 644
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	3 cut(s)	350, 639, 708
BseDI	CCNNGG	5 cut(s)	55, 165, 219, 237, 348
BseGI	GGATG	3 cut(s)	17, 74, 238
BseLI	CCNNNNNNNGG	3 cut(s)	202, 600, 644
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	330, 747
BseXI	GCAGC	3 cut(s)	33, 139, 347
BseYI	CCCAGC	1 cut(s)	748
Bsh1236I	CGCG	3 cut(s)	126, 186, 200
BshFI	GGCC	4 cut(s)	121, 170, 206, 774
BsiHKAI	GWGCWC	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	3 cut(s)	202, 600, 644
BsmAI	GTCTC	2 cut(s)	107, 193
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	765
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	121, 170, 206, 774
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	224, 776
Bsp1720I	GCTNAGC	1 cut(s)	605
Bsp19I	CCATGG	2 cut(s)	165, 219
BspACI	CCGC	5 cut(s)	7, 60, 129, 171, 200
BspANI	GGCC	4 cut(s)	121, 170, 206, 774
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	3 cut(s)	126, 186, 200
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	5 cut(s)	55, 165, 219, 237, 348
BssMI	GATC	2 cut(s)	224, 776
BssT1I	CCWWGG	3 cut(s)	165, 219, 237
Bst2UI	CCWGG	3 cut(s)	350, 639, 708
Bst4CI	ACNGT	2 cut(s)	358, 494
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	277, 288
BstDEI	CTNAG	3 cut(s)	39, 474, 605
BstDSI	CCRYGG	2 cut(s)	165, 219
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	17, 74, 238
BstFNI	CGCG	3 cut(s)	126, 186, 200
BstHHI	GCGC	3 cut(s)	97, 128, 791
BstKTI	GATC	2 cut(s)	227, 779
BstMAI	GTCTC	2 cut(s)	107, 193
BstMBI	GATC	2 cut(s)	224, 776
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 565
BstNI	CCWGG	3 cut(s)	350, 639, 708
BstSCI	CCNGG	3 cut(s)	348, 637, 706
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	3 cut(s)	126, 186, 200
BstV1I	GCAGC	3 cut(s)	33, 139, 347
BsuRI	GGCC	4 cut(s)	121, 170, 206, 774
BtgI	CCRYGG	2 cut(s)	165, 219
BtsCI	GGATG	3 cut(s)	17, 74, 238
Cac8I	GCNNGC	2 cut(s)	277, 288
CfoI	GCGC	3 cut(s)	97, 128, 791
Cfr13I	GGNCC	2 cut(s)	52, 119
CseI	GACGC	2 cut(s)	158, 175
Csp6I	GTAC	3 cut(s)	4, 265, 324
CviAII	CATG	3 cut(s)	166, 220, 433
CviQI	GTAC	3 cut(s)	4, 265, 324
DdeI	CTNAG	3 cut(s)	39, 474, 605
DpnI	GATC	2 cut(s)	226, 778
DpnII	GATC	2 cut(s)	224, 776
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	3 cut(s)	165, 219, 237
Eco147I	AGGCCT	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoRII	CCWGG	3 cut(s)	348, 637, 706
EcoT14I	CCWWGG	3 cut(s)	165, 219, 237
ErhI	CCWWGG	3 cut(s)	165, 219, 237
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	169, 223, 436
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	3 cut(s)	165, 219, 432
Fnu4HI	GCNGC	5 cut(s)	47, 129, 153, 171, 336
FokI	GGATG	3 cut(s)	4, 61, 245
Fsp4HI	GCNGC	5 cut(s)	47, 129, 153, 171, 336
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	3 cut(s)	96, 127, 790
GluI	GCNGC	5 cut(s)	47, 129, 153, 171, 336
GsaI	CCCAGC	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	4 cut(s)	121, 170, 206, 774
HgaI	GACGC	2 cut(s)	158, 175
HhaI	GCGC	3 cut(s)	97, 128, 791
Hin1II	CATG	3 cut(s)	169, 223, 436
Hin6I	GCGC	3 cut(s)	95, 126, 789
HinP1I	GCGC	3 cut(s)	95, 126, 789
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	457
HphI	GGTGA	5 cut(s)	97, 154, 185, 429, 653
Hpy166II	GTNNAC	2 cut(s)	145, 162
Hpy188I	TCNGA	2 cut(s)	362, 731
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	2 cut(s)	145, 162
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	4 cut(s)	31, 118, 638, 759
HpyCH4III	ACNGT	2 cut(s)	358, 494
HpyCH4V	TGCA	3 cut(s)	181, 335, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 565
HpyF3I	CTNAG	3 cut(s)	39, 474, 605
Hsp92II	CATG	3 cut(s)	169, 223, 436
HspAI	GCGC	3 cut(s)	95, 126, 789
Kzo9I	GATC	2 cut(s)	224, 776
Lsp1109I	GCAGC	3 cut(s)	33, 139, 347
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	214, 435
MalI	GATC	2 cut(s)	226, 778
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	2 cut(s)	224, 776
MboII	GAAGA	2 cut(s)	21, 413
MfeI	CAATTG	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	452, 571, 652
MluI	ACGCGT	1 cut(s)	184
MseI	TTAA	3 cut(s)	446, 677, 738
MspA1I	CMGCKG	1 cut(s)	338
MspR9I	CCNGG	3 cut(s)	350, 639, 708
MunI	CAATTG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	3 cut(s)	350, 639, 708
MvnI	CGCG	3 cut(s)	126, 186, 200
MwoI	GCNNNNNNNGC	2 cut(s)	296, 565
NcoI	CCATGG	2 cut(s)	165, 219
NdeII	GATC	2 cut(s)	224, 776
NlaIII	CATG	3 cut(s)	169, 223, 436
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	5 cut(s)	48, 130, 154, 172, 337
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	3 cut(s)	348, 637, 706
PspFI	CCCAGC	1 cut(s)	748
PspGI	CCWGG	3 cut(s)	348, 637, 706
PspPI	GGNCC	2 cut(s)	52, 119
PstI	CTGCAG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	3 cut(s)	5, 266, 325
RsaNI	GTAC	3 cut(s)	4, 265, 324
SaqAI	TTAA	3 cut(s)	446, 677, 738
SatI	GCNGC	5 cut(s)	47, 129, 153, 171, 336
Sau3AI	GATC	2 cut(s)	224, 776
Sau96I	GGNCC	2 cut(s)	52, 119
ScrFI	CCNGG	3 cut(s)	350, 639, 708
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	3 cut(s)	452, 571, 652
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	5 cut(s)	7, 60, 129, 171, 200
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	206
StyD4I	CCNGG	3 cut(s)	348, 637, 706
StyI	CCWWGG	3 cut(s)	165, 219, 237
TaaI	ACNGT	2 cut(s)	358, 494
TaqI	TCGA	3 cut(s)	420, 499, 613
TasI	AATT	3 cut(s)	452, 571, 652
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	131, 173
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	3 cut(s)	446, 677, 738
Tru9I	TTAA	3 cut(s)	446, 677, 738
TseFI	GTSAC	1 cut(s)	435
TseI	GCWGC	3 cut(s)	46, 152, 335
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	2 cut(s)	6, 63
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.