Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018283

Physical Location & Seq

Genomic Coordinates Reverse (-)

3468160 .. 3468899

Gene Structure 740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G07732.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAACAATGCGGCTAAGCGTGCAGATTGTTGGTTTGGCGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTTATTTTACCAAAGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTGTGCCGAAGCTGTTTATAAAGCACAGGCTGAAACAGGTGGAATCAAAGGGCATTATTTGAATGCTACTCCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTGGCTCATTCGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0010033 GO:0010035 GO:0010038 GO:0010287 GO:0015935 GO:0016020 GO:0022626 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055035 GO:0071944 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RuBisCO_large RuBisCO_large_N

Protein Analysis

116

Amino Acids

13.07

Weight (kDa)

8.73

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuBisCO_large	PF00016	14 - 114	1.3e-39	Ribulose bisphosphate carboxylase large chain, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07732 ATMG00280
malus_domestica	MD07G1039000.v1.1 MD07G1110300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0043001
rosa_laevigata	RLG00000030425
rosa_multiflora	Rmu_sc0000239.1_g000052
rosa_samantha	Rh5BG294900 Rh5DG304700
rosa_wichuraiana	Rw5G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	73
AccII	CGCG	1 cut(s)	41
AciI	CCGC	2 cut(s)	11, 321
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	217
AhlI	ACTAGT	1 cut(s)	329
AluBI	AGCT	2 cut(s)	167, 257
AluI	AGCT	2 cut(s)	167, 257
Alw26I	GTCTC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	310
BclI	TGATCA	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	135
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	12
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	246
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	11, 321
BspFNI	CGCG	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	135
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 263
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	234, 296
CviJI	RGCY	5 cut(s)	14, 167, 185, 257, 338
CviKI_1	RGCY	5 cut(s)	14, 167, 185, 257, 338
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	2 cut(s)	237, 299
FaiI	YATR	6 cut(s)	51, 66, 131, 174, 235, 297
FatI	CATG	2 cut(s)	233, 295
FbaI	TGATCA	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	237, 299
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	198, 315
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	74, 83, 115
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	3 cut(s)	74, 83, 115
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	23, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 263
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	237, 299
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	5 cut(s)	167, 177, 240, 280, 294
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	76
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	55, 251
MluCI	AATT	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	116
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	1 cut(s)	305
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	20, 263
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	237, 299
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	237
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	198, 315
PkrI	GCNGC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	174
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	4 cut(s)	79, 169, 196, 259
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	2 cut(s)	11, 321
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	344
TasI	AATT	1 cut(s)	272
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	198, 315
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	17, 81
XceI	RCATGY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.