Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000239.1

Orthogroup ID

OG0018283

Physical Location & Seq

Genomic Coordinates Forward (+)

320768 .. 321277

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000239.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgcattggagagaccgtttcttattttgtgccgaagcaatttataaagcgcaggctgaaacaggtgaaatcaaagggcattacttgaatgctactgcaggtacatgcgaagacatgatgaaaagagccgtattttccagagaattgggagttcctatcgtaatgcacgattacttaacggggggattcactgcaaatactaccttggctcattattgccgagataatggtctacttcttcacatccaccgtgcaatgcatgctgttattgatagaaagaagaatcatggtatgcactttcgtgtactagctaaagcattacgtatgtctggtggagatcatatccacgctggtaccgtagtaggtaaacttgagggggaaagagaaatcactttaggctttgttgatttactacgtgatgattatattgaaaaaaattcaattgcaggcaaaaacacaaacctctatcaggatcaggcggatgtggactcaaaagatttgacagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00630 ko00640 ko00710 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00630 map00640 map00710 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

RuBisCO_large RuBisCO_large_N

Protein Analysis

169

Amino Acids

18.99

Weight (kDa)

6.83

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07732 ATMG00280
malus_domestica	MD07G1039000.v1.1 MD07G1110300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0043001
rosa_laevigata	RLG00000030425
rosa_multiflora	Rmu_sc0000239.1_g000052
rosa_samantha	Rh5BG294900 Rh5DG304700
rosa_wichuraiana	Rw5G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	89
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	232
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	436
AfaI	GTAC	3 cut(s)	103, 306, 355
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	88, 431, 441
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	311, 506
AluI	AGCT	2 cut(s)	311, 506
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	480
ApoI	RAATTY	1 cut(s)	436
Asp718I	GGTACC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	77
BaeI	ACNNNNGTAYC	4 cut(s)	337, 345, 370, 378
BanI	GGYRCC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	392
BsaAI	YACGTR	2 cut(s)	323, 416
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	243, 487
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	337, 472
BspACI	CCGC	1 cut(s)	479
BspLI	GGNNCC	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	337, 472
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	17, 251, 358
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBAI	YACGTR	2 cut(s)	323, 416
BstC8I	GCNNGC	3 cut(s)	54, 261, 448
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	243, 487
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	340, 475
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	2 cut(s)	337, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	2 cut(s)	108, 263
BstSFI	CTRYAG	1 cut(s)	96
BstSNI	TACGTA	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	243, 487
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	54, 261, 448
CfoI	GCGC	1 cut(s)	52
Csp6I	GTAC	3 cut(s)	102, 305, 354
CviAII	CATG	4 cut(s)	105, 115, 260, 287
CviJI	RGCY	6 cut(s)	56, 128, 209, 311, 399, 506
CviKI_1	RGCY	6 cut(s)	56, 128, 209, 311, 399, 506
CviQI	GTAC	3 cut(s)	102, 305, 354
DpnI	GATC	2 cut(s)	339, 474
DpnII	GATC	2 cut(s)	337, 472
EciI	GGCGGA	1 cut(s)	494
Eco105I	TACGTA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	204
EcoT22I	ATGCAT	2 cut(s)	6, 261
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	4 cut(s)	108, 118, 263, 290
FaiI	YATR	9 cut(s)	45, 106, 116, 261, 288, 293, 326, 342, 426
FatI	CATG	4 cut(s)	104, 114, 259, 286
FblI	GTMKAC	1 cut(s)	232
FokI	GGATG	2 cut(s)	230, 494
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	108, 118, 263, 290
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	3 cut(s)	186, 283, 488
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	4 cut(s)	233, 305, 368, 487
Hpy188III	TCNNGA	2 cut(s)	138, 470
Hpy8I	GTNNAC	4 cut(s)	233, 305, 368, 487
HpyCH4III	ACNGT	3 cut(s)	17, 251, 358
HpyCH4IV	ACGT	2 cut(s)	322, 415
HpyCH4V	TGCA	8 cut(s)	4, 98, 166, 194, 254, 259, 295, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpySE526I	ACGT	2 cut(s)	322, 415
Hsp92II	CATG	4 cut(s)	108, 118, 263, 290
HspAI	GCGC	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	337, 472
LpnPI	CCDG	9 cut(s)	38, 48, 84, 151, 315, 336, 432, 455, 461
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	322, 415
MalI	GATC	2 cut(s)	339, 474
MboI	GATC	2 cut(s)	337, 472
MboII	GAAGA	3 cut(s)	122, 230, 292
MfeI	CAATTG	1 cut(s)	441
MluCI	AATT	4 cut(s)	39, 143, 436, 441
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	2 cut(s)	367, 473
Mph1103I	ATGCAT	2 cut(s)	6, 261
MseI	TTAA	2 cut(s)	176, 508
MslI	CAYNNNNRTG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	2 cut(s)	337, 472
NlaIII	CATG	4 cut(s)	108, 118, 263, 290
NlaIV	GGNNCC	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	245
NsiI	ATGCAT	2 cut(s)	6, 261
NspI	RCATGY	2 cut(s)	108, 263
OliI	CACNNNNGTG	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 354
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	186, 283
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	2 cut(s)	323, 416
PsiI	TTATAA	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	100
RsaI	GTAC	3 cut(s)	103, 306, 355
RsaNI	GTAC	3 cut(s)	102, 305, 354
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	176, 508
Sau3AI	GATC	2 cut(s)	337, 472
SchI	GAGTC	1 cut(s)	482
SetI	ASST	9 cut(s)	67, 103, 206, 313, 325, 367, 418, 465, 508
SfcI	CTRYAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SnaBI	TACGTA	1 cut(s)	323
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	4 cut(s)	39, 143, 436, 441
SsiI	CCGC	1 cut(s)	479
SspMI	CTAG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	17, 251, 358
TaiI	ACGT	2 cut(s)	325, 418
TasI	AATT	4 cut(s)	39, 143, 436, 441
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	186, 283
Tru1I	TTAA	2 cut(s)	176, 508
Tru9I	TTAA	2 cut(s)	176, 508
TscAI	CASTG	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	2 cut(s)	108, 263
XmiI	GTMKAC	1 cut(s)	232
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	2 cut(s)	6, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.