Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018283

Physical Location & Seq

Genomic Coordinates Forward (+)

61286836 .. 61287747

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCGGAGTATGAAACCAAAGATACTGATATCTTGGCAGCATTTCGAGTAACTCCTCAACCTAGAGTTCCGCCTGAGGAAGCAGGGGCAGCGGTAGCTGCGGAATCTTCTACTGGTACATGGACAACTGTATGGACTGATGGGCTTACCAGTCTTGATCGTTACAAAGGGCGATGCTACCACATTGAACCTGTTGCTGGAGAAGAAAGTCAATTTATTGCTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAGGGTTCGGTTACTAACATGTTTACTTCCATTGTAGGTAATGTGTTTGGGTTCAAGGCCTTGCGTGCTCTACGTCTGGAGGATTTACGAATCCCTACTGCTTATGTTAAAACTTTCCAAGGCCCGCCTCACGGGATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGCCGCCCCCTATTGGGATGTACTATTAAATCTAAATTGGGGTTATCCGCTAAGAATTACGGTAGAGCAATTTATGAATGTCTCCGCGGTGGACTTGATTTTACCAAAGATGATGAGAATGTTAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTGTGCCGAAGCAATTTATAAAGCGCAGGCTGAAACAGGTGAAATCAAAGGGCATTACTTGAATGCTACTGCAGGTACATGCGAAGATATGATGAAAAGAGCCGTATTTGCCAGAGAATTGGGAGTTCCTATCGTAATGCACGATTACTTAACGGGGGGATTCACTGCAAATACTACCTTGGCTCATTATTGCCGAGATAATGGTCTACTTCTTCACATCCACCGTGCAATGCATGCTGTTATTGATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00630 ko00640 ko00710 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00630 map00640 map00710 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

RuBisCO_large RuBisCO_large_N

Protein Analysis

304

Amino Acids

33.89

Weight (kDa)

7.08

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuBisCO_large_N	PF02788	24 - 144	1.2e-42	Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_large	PF00016	154 - 303	6.2e-69	Ribulose bisphosphate carboxylase large chain, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07732 ATMG00280
malus_domestica	MD07G1039000.v1.1 MD07G1110300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0043001
rosa_laevigata	RLG00000030425
rosa_multiflora	Rmu_sc0000239.1_g000052
rosa_samantha	Rh5BG294900 Rh5DG304700
rosa_wichuraiana	Rw5G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	60, 678
Acc36I	ACCTGC	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	865
AccII	CGCG	1 cut(s)	582
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	8 cut(s)	146, 167, 176, 452, 499, 543, 580, 582
AclWI	GGATC	2 cut(s)	457, 470
AcoI	YGGCCR	1 cut(s)	496
AfaI	GTAC	3 cut(s)	193, 517, 736
AfiI	CCNNNNNNNGG	4 cut(s)	272, 458, 508, 509
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	7 cut(s)	40, 263, 326, 382, 473, 487, 721
AluBI	AGCT	3 cut(s)	44, 173, 305
AluI	AGCT	3 cut(s)	44, 173, 305
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	3 cut(s)	11, 581, 639
AlwI	GGATC	2 cut(s)	457, 470
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	384, 448, 496
ApeKI	GCWGC	3 cut(s)	113, 164, 173
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	710
AxyI	CCTNAGG	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	125, 160, 176
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	746
BcoDI	GTCTC	3 cut(s)	11, 581, 639
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	729
BfuAI	ACCTGC	1 cut(s)	722
BisI	GCNGC	4 cut(s)	114, 165, 174, 499
BlsI	GCNGC	4 cut(s)	115, 166, 175, 500
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	464
BmsI	GCATC	1 cut(s)	239
BpmI	CTGGAG	2 cut(s)	294, 425
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	3 cut(s)	445, 580, 837
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 458, 508, 509
Bse1I	ACTGG	2 cut(s)	193, 225
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	894
BseAI	TCCGGA	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	445, 580, 837
BseGI	GGATG	2 cut(s)	518, 876
BseLI	CCNNNNNNNGG	4 cut(s)	272, 458, 508, 509
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	193, 225
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	125, 160, 176
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	386, 450, 498
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	272, 458, 508, 509
BsmAI	GTCTC	3 cut(s)	11, 581, 639
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	386, 450, 498
Bso31I	GGTCTC	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	232, 462
BspACI	CCGC	8 cut(s)	146, 167, 176, 452, 499, 543, 580, 582
BspANI	GGCC	3 cut(s)	386, 450, 498
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	457, 470
BspTNI	GGTCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	894
BsrI	ACTGG	2 cut(s)	193, 225
BssECI	CCNNGG	3 cut(s)	445, 580, 837
BssMI	GATC	2 cut(s)	232, 462
BssT1I	CCWWGG	2 cut(s)	445, 837
Bst4CI	ACNGT	4 cut(s)	205, 557, 650, 884
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	4 cut(s)	393, 452, 687, 894
BstDEI	CTNAG	3 cut(s)	150, 313, 546
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	518, 876
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	2 cut(s)	235, 465
BstMAI	GTCTC	3 cut(s)	11, 581, 639
BstMBI	GATC	2 cut(s)	232, 462
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 170, 173, 302, 392, 767, 893
BstNSI	RCATGY	3 cut(s)	349, 741, 896
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	3 cut(s)	125, 160, 176
BstX2I	RGATCY	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	386, 450, 498
BtgI	CCRYGG	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	518, 876
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	822
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	4 cut(s)	393, 452, 687, 894
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	1 cut(s)	449
Cfr42I	CCGCGG	1 cut(s)	583
Csp6I	GTAC	3 cut(s)	192, 516, 735
CviAII	CATG	4 cut(s)	195, 346, 738, 893
CviQI	GTAC	3 cut(s)	192, 516, 735
DdeI	CTNAG	3 cut(s)	150, 313, 546
DpnI	GATC	2 cut(s)	234, 464
DpnII	GATC	2 cut(s)	232, 462
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	445, 837
Eco147I	AGGCCT	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	106
Eco81I	CCTNAGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	445, 837
EcoT22I	ATGCAT	1 cut(s)	894
ErhI	CCWWGG	2 cut(s)	445, 837
FaeI	CATG	4 cut(s)	198, 349, 741, 896
FatI	CATG	4 cut(s)	194, 345, 737, 892
FauI	CCCGC	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	865
Fnu4HI	GCNGC	4 cut(s)	114, 165, 174, 499
FokI	GGATG	2 cut(s)	525, 863
Fsp4HI	GCNGC	4 cut(s)	114, 165, 174, 499
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	4 cut(s)	114, 165, 174, 499
GsuI	CTGGAG	2 cut(s)	294, 425
HaeIII	GGCC	3 cut(s)	386, 450, 498
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	4 cut(s)	198, 349, 741, 896
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	4 cut(s)	36, 179, 417, 819
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	3 cut(s)	351, 587, 866
Hpy188III	TCNNGA	3 cut(s)	80, 230, 404
Hpy8I	GTNNAC	3 cut(s)	351, 587, 866
HpyCH4III	ACNGT	4 cut(s)	205, 557, 650, 884
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	5 cut(s)	731, 799, 827, 887, 892
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 170, 173, 302, 392, 767, 893
HpyF3I	CTNAG	3 cut(s)	150, 313, 546
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	4 cut(s)	198, 349, 741, 896
HspAI	GCGC	1 cut(s)	683
Kpn2I	TCCGGA	1 cut(s)	79
KspI	CCGCGG	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	232, 462
Lsp1109I	GCAGC	3 cut(s)	125, 160, 176
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	4 cut(s)	3, 124, 236, 337
MalI	GATC	2 cut(s)	234, 464
MboI	GATC	2 cut(s)	232, 462
MboII	GAAGA	5 cut(s)	174, 290, 338, 755, 863
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	9 cut(s)	62, 287, 482, 530, 550, 564, 619, 672, 776
MmeI	TCCRAC	2 cut(s)	13, 620
MnlI	CCTC	5 cut(s)	141, 145, 322, 400, 465
Mph1103I	ATGCAT	1 cut(s)	894
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	5 cut(s)	51, 435, 522, 618, 809
MspA1I	CMGCKG	2 cut(s)	167, 582
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	727
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	7 cut(s)	164, 170, 173, 302, 392, 767, 893
NdeII	GATC	2 cut(s)	232, 462
NlaIII	CATG	4 cut(s)	198, 349, 741, 896
NlaIV	GGNNCC	1 cut(s)	464
NmeAIII	GCCGAG	1 cut(s)	878
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	894
NspI	RCATGY	3 cut(s)	349, 741, 896
PaeI	GCATGC	1 cut(s)	896
PceI	AGGCCT	1 cut(s)	386
PciI	ACATGT	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	4 cut(s)	36, 179, 417, 819
PkrI	GCNGC	4 cut(s)	115, 166, 175, 500
PscI	ACATGT	1 cut(s)	345
PsiI	TTATAA	2 cut(s)	60, 678
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	3 cut(s)	193, 517, 736
RsaNI	GTAC	3 cut(s)	192, 516, 735
SacII	CCGCGG	1 cut(s)	583
SaqAI	TTAA	5 cut(s)	51, 435, 522, 618, 809
SatI	GCNGC	4 cut(s)	114, 165, 174, 499
Sau3AI	GATC	2 cut(s)	232, 462
Sau96I	GGNCC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	239
SfcI	CTRYAG	1 cut(s)	729
Sfr303I	CCGCGG	1 cut(s)	583
SgrBI	CCGCGG	1 cut(s)	583
SphI	GCATGC	1 cut(s)	896
Sse9I	AATT	9 cut(s)	62, 287, 482, 530, 550, 564, 619, 672, 776
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	8 cut(s)	146, 167, 176, 452, 499, 543, 580, 582
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	386
StyI	CCWWGG	2 cut(s)	445, 837
TaaI	ACNGT	4 cut(s)	205, 557, 650, 884
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	121
TasI	AATT	9 cut(s)	62, 287, 482, 530, 550, 564, 619, 672, 776
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	4 cut(s)	36, 179, 417, 819
Tru1I	TTAA	5 cut(s)	51, 435, 522, 618, 809
Tru9I	TTAA	5 cut(s)	51, 435, 522, 618, 809
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	3 cut(s)	113, 164, 173
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	102, 585, 767
TspRI	CASTG	1 cut(s)	829
XceI	RCATGY	3 cut(s)	349, 741, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XmiI	GTMKAC	1 cut(s)	865
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.