AT2G10930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011734
Physical Location & Seq
Reverse (-)
4303281 .. 4304075
795 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G10930.1

Sequence Viewer

Length: 450 bp
ATGGAAGTGAGCGATGGGTCGTCTCAAGTTTTAAATTCGATGAAGCATGTTGCGTCTCTGCGCGCCGATGAAGATCCCGACGAGACCTCCCTTCTACTTTCCTCTACGCTCCTCGATTTGGTTGTGTTTAGGCTCGTGTTGGTTTTGTATTGTGTTCGAGTGTTGATGTTGGATCAATATCAAGAGACAATAGCATTGTCTCAAGAGGTAATGATGGAAGACGGAAGACGTGAGTTTAACGTACCGATGAACTGTCCAATACCCGTGGTGAAGCGAAGAATGAAGGCACCAAAGCATGTGGATGAAGACTTGTTCAAAATCTTCCCACAGGCCACAACTTATCTCCGTCAAATCCAAAAGGGAGGTGGGTCTGGGTGCTTTGAATTCATAAGAGGAGAAGTTTGCACGAAAGACTTGAGTCAGAACAACACTTTTTATTTTATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.03

Weight (kDa)

5.18

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10930 AT5G48500
fragaria_vesca FvH4_2g17840
malus_domestica MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica Prupe.8G190600_v2.0.a1
pyrus_communis pycom05g15140 pycom10g13120
rosa_chinensis RchiOBHm_Chr6g0282871
rosa_laevigata RLG00000012861
rosa_multiflora Rmu_sc0006070.1_g000001
rosa_roxburghii Rroxscaffold_7G00185920
rosa_rugosa Rorug06G0150100
rosa_samantha Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AccII CGCG 1 cut(s) 63
AclWI GGATC 2 cut(s) 68, 180
AcsI RAATTY 2 cut(s) 34, 383
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 316, 383
AjiI CACGTC 1 cut(s) 230
Alw26I GTCTC 5 cut(s) 27, 60, 77, 179, 204
AlwI GGATC 2 cut(s) 68, 180
AoxI GGCC 1 cut(s) 330
ApoI RAATTY 2 cut(s) 34, 383
AspLEI GCGC 2 cut(s) 63, 65
AsuHPI GGTGA 1 cut(s) 280
BanI GGYRCC 1 cut(s) 286
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 3 cut(s) 225, 232, 312
BccI CCATC 2 cut(s) 8, 208
BcoDI GTCTC 5 cut(s) 27, 60, 77, 179, 204
BmgBI CACGTC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 288
BoxI GACNNNNGTC 1 cut(s) 417
BpiI GAAGAC 3 cut(s) 225, 232, 312
BpuEI CTTGAG 3 cut(s) 9, 186, 436
BsaBI GATNNNNATC 2 cut(s) 72, 177
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse8I GATNNNNATC 2 cut(s) 72, 177
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 2 cut(s) 72, 177
BseLI CCNNNNNNNGG 1 cut(s) 118
BsePI GCGCGC 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 101, 408
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 5 cut(s) 27, 60, 77, 179, 204
BsmBI CGTCTC 2 cut(s) 27, 60
BsnI GGCC 1 cut(s) 332
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 73, 172
BspANI GGCC 1 cut(s) 332
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 2 cut(s) 68, 180
BspT107I GGYRCC 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 264
BssHII GCGCGC 1 cut(s) 61
BssMI GATC 2 cut(s) 73, 172
BssSI CACGAG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 2 cut(s) 63, 65
BstKTI GATC 2 cut(s) 76, 175
BstMAI GTCTC 5 cut(s) 27, 60, 77, 179, 204
BstMBI GATC 2 cut(s) 73, 172
BstNSI RCATGY 2 cut(s) 50, 299
BstPAI GACNNNNGTC 1 cut(s) 417
BstUI CGCG 1 cut(s) 63
BstV2I GAAGAC 3 cut(s) 225, 232, 312
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 2 cut(s) 63, 65
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 242
CspCI CAANNNNNGTGG 4 cut(s) 246, 279, 281, 314
CviAII CATG 2 cut(s) 47, 296
CviJI RGCY 2 cut(s) 133, 332
CviKI_1 RGCY 2 cut(s) 133, 332
CviQI GTAC 1 cut(s) 242
DpnI GATC 2 cut(s) 75, 174
DpnII GATC 2 cut(s) 73, 172
DraI TTTAAA 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 383
Esp3I CGTCTC 2 cut(s) 27, 60
FaeI CATG 2 cut(s) 50, 299
FaiI YATR 3 cut(s) 48, 297, 389
FatI CATG 2 cut(s) 46, 295
FokI GGATG 1 cut(s) 314
GlaI GCGC 2 cut(s) 62, 64
HaeIII GGCC 1 cut(s) 332
HgaI GACGC 1 cut(s) 42
HhaI GCGC 2 cut(s) 63, 65
Hin1II CATG 2 cut(s) 50, 299
Hin6I GCGC 2 cut(s) 61, 63
HinP1I GCGC 2 cut(s) 61, 63
HinfI GANTC 1 cut(s) 418
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 3 cut(s) 77, 182, 203
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 101, 277
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 229, 240
HpyCH4V TGCA 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 229, 240
Hsp92II CATG 2 cut(s) 50, 299
HspAI GCGC 2 cut(s) 61, 63
Kzo9I GATC 2 cut(s) 73, 172
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 2 cut(s) 314, 357
MaeII ACGT 2 cut(s) 229, 240
MalI GATC 2 cut(s) 75, 174
MboI GATC 2 cut(s) 73, 172
MboII GAAGA 6 cut(s) 83, 230, 237, 288, 313, 317
MflI RGATCY 1 cut(s) 73
MluCI AATT 2 cut(s) 34, 383
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 6 cut(s) 97, 112, 122, 199, 356, 386
MseI TTAA 3 cut(s) 32, 237, 448
MslI CAYNNNNRTG 1 cut(s) 300
MvnI CGCG 1 cut(s) 63
NdeII GATC 2 cut(s) 73, 172
NlaIII CATG 2 cut(s) 50, 299
NlaIV GGNNCC 1 cut(s) 288
NspI RCATGY 2 cut(s) 50, 299
PauI GCGCGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
PshAI GACNNNNGTC 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 73
PteI GCGCGC 1 cut(s) 61
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 3 cut(s) 32, 237, 448
Sau3AI GATC 2 cut(s) 73, 172
SchI GAGTC 1 cut(s) 427
SetI ASST 5 cut(s) 89, 210, 232, 243, 367
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 3 cut(s) 24, 201, 415
SmoI CTYRAG 3 cut(s) 24, 201, 415
Sse9I AATT 2 cut(s) 34, 383
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 232, 243
TaqI TCGA 3 cut(s) 38, 114, 157
TasI AATT 2 cut(s) 34, 383
Tru1I TTAA 3 cut(s) 32, 237, 448
Tru9I TTAA 3 cut(s) 32, 237, 448
TspDTI ATGAA 6 cut(s) 56, 84, 263, 296, 318, 376
TspGWI ACGGA 2 cut(s) 237, 335
XapI RAATTY 2 cut(s) 34, 383
XceI RCATGY 2 cut(s) 50, 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.