Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011734

Physical Location & Seq

Genomic Coordinates Forward (+)

28840766 .. 28842369

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1159900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATCAAGAATTTAGGATGATGAGGAGTCAAGTTCCAGCGTTTGGGAGCTGGGATTGGAACCAAGACCTTCCATTTACTCAGTGTTTTGAGTCGGCAAGGCAGGCTGGGCTTCTGCACTACACTACTTACTCTGATGGACACGATGAGGATCGTGATCTGTACGTTGCTGGTGATCTGTATGAGAATCATGTTGTCACACCTGCCATGATTGTTGTTCCTCGCAGAAGGAACAAAATGCGGCAGTCACATGTGAAAGAAGCAAAAGAGGAAAGTTGGGTGGTGAGTGATGTGAAGGAGCCACCAAGCCCTCCACCAAGGCACAGGCCTACACCAAAGCCAGTGGATGAAGACTTGTACAAAATTTCACCAGACCTCCTCTATGCAAAATCCAAAAAGAAGAGAGGATTTGGGTTCTTTTCAAGCTGCTTGCTGCCATCCTGTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.35

Weight (kDa)

6.96

Isoelectric Point (pI)

71.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10930 AT5G48500
fragaria_vesca	FvH4_2g17840
malus_domestica	MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica	Prupe.8G190600_v2.0.a1
pyrus_communis	pycom05g15140 pycom10g13120
rosa_chinensis	RchiOBHm_Chr6g0282871
rosa_laevigata	RLG00000012861
rosa_multiflora	Rmu_sc0006070.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185920
rosa_rugosa	Rorug06G0150100
rosa_samantha	Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana	Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	2 cut(s)	12, 159
AcsI	RAATTY	2 cut(s)	11, 363
AfaI	GTAC	2 cut(s)	164, 359
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	423
AluBI	AGCT	2 cut(s)	51, 426
AluI	AGCT	2 cut(s)	51, 426
AlwI	GGATC	2 cut(s)	12, 159
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	426, 433
ApoI	RAATTY	2 cut(s)	11, 363
AsuHPI	GGTGA	3 cut(s)	185, 295, 360
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	413, 420
BccI	CCATC	2 cut(s)	131, 445
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	242, 427, 434
BlsI	GCNGC	3 cut(s)	243, 428, 435
BmiI	GGNNCC	2 cut(s)	62, 300
BpiI	GAAGAC	1 cut(s)	357
BsaBI	GATNNNNATC	2 cut(s)	150, 156
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	341
Bse8I	GATNNNNATC	2 cut(s)	150, 156
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	3 cut(s)	24, 352, 437
BseJI	GATNNNNATC	2 cut(s)	150, 156
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	40, 368
BseXI	GCAGC	2 cut(s)	413, 420
BseYI	CCCAGC	2 cut(s)	51, 107
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	44
BsnI	GGCC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	4, 151, 157, 175
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	62, 300
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	12, 159
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	4 cut(s)	4, 151, 157, 175
BssT1I	CCWWGG	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	105, 431
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	24, 352, 437
BstKTI	GATC	4 cut(s)	7, 154, 160, 178
BstMBI	GATC	4 cut(s)	4, 151, 157, 175
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 109
BstNSI	RCATGY	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	413, 420
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	24, 352, 437
BtsIMutI	CAGTG	2 cut(s)	89, 348
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	105, 431
Csp6I	GTAC	2 cut(s)	163, 358
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	3 cut(s)	191, 208, 251
CviJI	RGCY	8 cut(s)	51, 107, 112, 301, 309, 328, 340, 426
CviKI_1	RGCY	8 cut(s)	51, 107, 112, 301, 309, 328, 340, 426
CviQI	GTAC	2 cut(s)	163, 358
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	4 cut(s)	6, 153, 159, 177
DpnII	GATC	4 cut(s)	4, 151, 157, 175
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	317
Eco147I	AGGCCT	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	3 cut(s)	194, 211, 254
FaiI	YATR	5 cut(s)	183, 192, 209, 252, 384
FatI	CATG	3 cut(s)	190, 207, 250
Fnu4HI	GCNGC	3 cut(s)	242, 427, 434
FokI	GGATG	3 cut(s)	31, 359, 424
Fsp4HI	GCNGC	3 cut(s)	242, 427, 434
GluI	GCNGC	3 cut(s)	242, 427, 434
GsaI	CCCAGC	2 cut(s)	55, 111
HaeIII	GGCC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	194, 211, 254
HinfI	GANTC	3 cut(s)	28, 92, 187
HphI	GGTGA	3 cut(s)	185, 295, 360
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	8, 155
HpyAV	CCTTC	3 cut(s)	80, 222, 289
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	118, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 109
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	194, 211, 254
Kzo9I	GATC	4 cut(s)	4, 151, 157, 175
LmnI	GCTCC	2 cut(s)	48, 298
LpnPI	CCDG	9 cut(s)	37, 51, 89, 93, 156, 216, 310, 354, 384
Lsp1109I	GCAGC	2 cut(s)	413, 420
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	196, 246
MalI	GATC	4 cut(s)	6, 153, 159, 177
MboI	GATC	4 cut(s)	4, 151, 157, 175
MboII	GAAGA	2 cut(s)	362, 412
MluCI	AATT	2 cut(s)	11, 363
MlyI	GAGTC	2 cut(s)	37, 101
MnlI	CCTC	8 cut(s)	18, 142, 231, 262, 321, 386, 389, 398
MwoI	GCNNNNNNNGC	2 cut(s)	104, 109
NdeII	GATC	4 cut(s)	4, 151, 157, 175
NlaIII	CATG	3 cut(s)	194, 211, 254
NlaIV	GGNNCC	2 cut(s)	62, 300
NmuCI	GTSAC	2 cut(s)	196, 246
NspI	RCATGY	1 cut(s)	254
PaqCI	CACCTGC	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	328
PciI	ACATGT	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	243, 428, 435
PleI	GAGTC	2 cut(s)	36, 100
PpsI	GAGTC	2 cut(s)	36, 100
PscI	ACATGT	1 cut(s)	250
PspFI	CCCAGC	2 cut(s)	51, 107
PspN4I	GGNNCC	2 cut(s)	62, 300
RsaI	GTAC	2 cut(s)	164, 359
RsaNI	GTAC	2 cut(s)	163, 358
SatI	GCNGC	3 cut(s)	242, 427, 434
Sau3AI	GATC	4 cut(s)	4, 151, 157, 175
SchI	GAGTC	2 cut(s)	37, 101
SetI	ASST	6 cut(s)	53, 72, 168, 205, 378, 428
Sse9I	AATT	2 cut(s)	11, 363
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	1 cut(s)	241
StuI	AGGCCT	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	168
TasI	AATT	2 cut(s)	11, 363
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	187
TscAI	CASTG	2 cut(s)	89, 348
TseFI	GTSAC	2 cut(s)	196, 246
TseI	GCWGC	2 cut(s)	426, 433
Tsp45I	GTSAC	2 cut(s)	196, 246
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	89, 348
Van91I	CCANNNNNTGG	1 cut(s)	44
XapI	RAATTY	2 cut(s)	11, 363
XceI	RCATGY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.