FvH4_2g17840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011734
Physical Location & Seq
Forward (+)
15305953 .. 15306885
933 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17840.t1

Sequence Viewer

Length: 453 bp
ATGGATCAAGGCTACTTCAGGAGGAGTCATCAAGTTCCTGCTTTTGGGAGCTGGGATTGGAACCAAGACCTTCCTTTCACTCAGTGCTTTGAGTCTGCACGACAAGCTGGGTTTCTGCGCTACACTACTTACTCTGATGAACATGATCAGGATAGGGATTTGTATGTCACCGGGGATTTGTACCAGAACGACATCGTCACTCCCGCCATGATCGTTGTTCCTCGCAGAAGGAACAAGATGCGTCAACCGCAAGTGAAAGTAGCAAAAGAGGAGAGTTGGGTCATGGGTGATGTGAAGGAGCCACCAAGCCCACCTCCAAGGTCCAGGCCCAATCCCAAGCCTGTGGATGAAGATTTATACAAAATCTCACCAGAACTACTCTATGCTAAAGCCAAGAAGAAGAGAGGGTTGGGTTTCTTTTCAAGCTGCTTGCTGCCAACATGTGTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.37

Weight (kDa)

8.76

Isoelectric Point (pI)

68.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10930 AT5G48500
fragaria_vesca FvH4_2g17840
malus_domestica MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica Prupe.8G190600_v2.0.a1
pyrus_communis pycom05g15140 pycom10g13120
rosa_chinensis RchiOBHm_Chr6g0282871
rosa_laevigata RLG00000012861
rosa_multiflora Rmu_sc0006070.1_g000001
rosa_roxburghii Rroxscaffold_7G00185920
rosa_rugosa Rorug06G0150100
rosa_samantha Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 204, 248
AclWI GGATC 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 1 cut(s) 423
AjnI CCWGG 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 3 cut(s) 51, 107, 426
AluI AGCT 3 cut(s) 51, 107, 426
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 426, 433
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 321, 327
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 3 cut(s) 160, 299, 360
AvaII GGWCC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 413, 420
BciT130I CCWGG 1 cut(s) 325
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 172
BisI GCNGC 2 cut(s) 427, 434
BlsI GCNGC 2 cut(s) 428, 435
Bme1390I CCNGG 2 cut(s) 172, 325
Bme18I GGWCC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 321, 327
BmiI GGNNCC 2 cut(s) 62, 300
BmrFI CCNGG 2 cut(s) 172, 325
BmsI GCATC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 171, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 171, 317
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 2 cut(s) 37, 284
BseXI GCAGC 2 cut(s) 413, 420
BseYI CCCAGC 2 cut(s) 51, 107
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 1 cut(s) 328
Bsp143I GATC 3 cut(s) 4, 145, 210
BspACI CCGC 2 cut(s) 204, 248
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 62, 300
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 171, 317
BssMI GATC 3 cut(s) 4, 145, 210
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 7, 148, 213
BstMBI GATC 3 cut(s) 4, 145, 210
BstMWI GCNNNNNNNGC 2 cut(s) 104, 247
BstNI CCWGG 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 170, 323
BstV1I GCAGC 2 cut(s) 413, 420
BstXI CCANNNNNNTGG 1 cut(s) 343
BsuRI GGCC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 431
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 321, 327
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 181
CviAII CATG 5 cut(s) 143, 208, 283, 441, 450
CviJI RGCY 9 cut(s) 12, 51, 107, 301, 309, 328, 340, 392, 426
CviKI_1 RGCY 9 cut(s) 12, 51, 107, 301, 309, 328, 340, 392, 426
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 81
DpnI GATC 3 cut(s) 6, 147, 212
DpnII GATC 3 cut(s) 4, 145, 210
DraIII CACNNNGTG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 5 cut(s) 146, 211, 286, 444, 453
FaiI YATR 8 cut(s) 144, 165, 209, 284, 358, 384, 442, 451
FatI CATG 5 cut(s) 142, 207, 282, 440, 449
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 427, 434
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 427, 434
GlaI GCGC 1 cut(s) 119
GluI GCNGC 2 cut(s) 427, 434
GsaI CCCAGC 2 cut(s) 55, 111
HaeIII GGCC 1 cut(s) 328
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 120
Hin1II CATG 5 cut(s) 146, 211, 286, 444, 453
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 245
HindII GTYRAC 1 cut(s) 245
HinfI GANTC 2 cut(s) 25, 92
HpaII CCGG 1 cut(s) 171
HphI GGTGA 3 cut(s) 160, 299, 360
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 19, 149
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 3 cut(s) 80, 222, 289
HpyCH4V TGCA 2 cut(s) 98, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 247
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 5 cut(s) 146, 211, 286, 444, 453
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 4, 145, 210
LmnI GCTCC 2 cut(s) 48, 298
Lsp1109I GCAGC 2 cut(s) 413, 420
LweI GCATC 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 166, 196
MalI GATC 3 cut(s) 6, 147, 212
MboI GATC 3 cut(s) 4, 145, 210
MboII GAAGA 3 cut(s) 362, 409, 412
MlyI GAGTC 2 cut(s) 34, 101
MnlI CCTC 5 cut(s) 15, 231, 262, 324, 398
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 172, 325
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 104, 247
NciI CCSGG 1 cut(s) 172
NdeII GATC 3 cut(s) 4, 145, 210
NlaIII CATG 5 cut(s) 146, 211, 286, 444, 453
NlaIV GGNNCC 2 cut(s) 62, 300
NmuCI GTSAC 2 cut(s) 166, 196
NspI RCATGY 1 cut(s) 444
PciI ACATGT 1 cut(s) 440
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 428, 435
PleI GAGTC 2 cut(s) 33, 100
PpsI GAGTC 2 cut(s) 33, 100
PscI ACATGT 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 323
PspFI CCCAGC 2 cut(s) 51, 107
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 62, 300
PspPI GGNCC 2 cut(s) 321, 327
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 2 cut(s) 427, 434
Sau3AI GATC 3 cut(s) 4, 145, 210
Sau96I GGNCC 2 cut(s) 321, 327
SchI GAGTC 2 cut(s) 34, 101
ScrFI CCNGG 2 cut(s) 172, 325
SetI ASST 6 cut(s) 53, 72, 109, 316, 323, 428
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 1 cut(s) 321
SsiI CCGC 2 cut(s) 204, 248
StyD4I CCNGG 2 cut(s) 170, 323
StyI CCWWGG 1 cut(s) 317
TscAI CASTG 1 cut(s) 89
TseFI GTSAC 2 cut(s) 166, 196
TseI GCWGC 2 cut(s) 426, 433
Tsp45I GTSAC 2 cut(s) 166, 196
TspDTI ATGAA 2 cut(s) 153, 363
TspRI CASTG 1 cut(s) 89
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 321
XceI RCATGY 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.