Rw1G003720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011734
Physical Location & Seq
Reverse (-)
7021140 .. 7024492
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003720.1

Sequence Viewer

Length: 387 bp
ATGGACTCGGCTATGGTTCGGGTTTTGCTCTTTAGGGCTTGGTGCTTCAATTTCTGGCATTGGTGGTGTGAATCGGCGACTAGAAATCGGAGGATTAAGGAAGGCAGTGGTGTCGCAGTTTGGAGGCCGGCGGCAGTGCATGTGGGTGATGAAGCTCGAGCTTGGAACAAGATGCGTCACCCGCAAGTGAAAGAAGCAAAAGAGGAGGGTTGGGTCATGGGTGAGGTGAAGGAGCCACCAAGCCCACCTCCAAGGTCCAGGCCCAATCCCAAGCCTGTGGATGAAGATTTGTACAAAATCTCACCTGAACTCCTCCATGCTAAAGCCGAAAAGAAGAGAGGATTGGGTTTCTTTTCAAGCTGCTTGCTGCCAACATGTGTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.7

Weight (kDa)

9.38

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10930 AT5G48500
fragaria_vesca FvH4_2g17840
malus_domestica MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica Prupe.8G190600_v2.0.a1
pyrus_communis pycom05g15140 pycom10g13120
rosa_chinensis RchiOBHm_Chr6g0282871
rosa_laevigata RLG00000012861
rosa_multiflora Rmu_sc0006070.1_g000001
rosa_roxburghii Rroxscaffold_7G00185920
rosa_rugosa Rorug06G0150100
rosa_samantha Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 131, 182
AfaI GTAC 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 2 cut(s) 49, 357
AjnI CCWGG 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 3 cut(s) 155, 161, 360
AluI AGCT 3 cut(s) 155, 161, 360
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 2 cut(s) 125, 260
ApeKI GCWGC 2 cut(s) 360, 367
AspS9I GGNCC 2 cut(s) 255, 261
AsuHPI GGTGA 5 cut(s) 158, 170, 233, 238, 294
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 347, 354
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 259
BfaI CTAG 1 cut(s) 81
BisI GCNGC 3 cut(s) 132, 361, 368
BlsI GCNGC 3 cut(s) 133, 362, 369
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 255, 261
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse118I RCCGGY 1 cut(s) 127
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 218, 302
BseXI GCAGC 2 cut(s) 347, 354
BshFI GGCC 2 cut(s) 127, 262
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 128
BsnI GGCC 2 cut(s) 127, 262
BsoBI CYCGRG 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 291
BspACI CCGC 2 cut(s) 131, 182
BspANI GGCC 2 cut(s) 127, 262
BspLI GGNNCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 129, 365
BstF5I GGATG 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 2 cut(s) 143, 378
BstSCI CCNGG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 347, 354
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 127, 262
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 2 cut(s) 112, 141
BtsIMutI CAGTG 2 cut(s) 112, 141
Cac8I GCNNGC 2 cut(s) 129, 365
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 255, 261
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 292
CviAII CATG 4 cut(s) 140, 217, 317, 375
CviQI GTAC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 4 cut(s) 143, 220, 320, 378
FaiI YATR 5 cut(s) 14, 141, 218, 318, 376
FatI CATG 4 cut(s) 139, 216, 316, 374
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 132, 361, 368
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 132, 361, 368
FspBI CTAG 1 cut(s) 81
GluI GCNGC 3 cut(s) 132, 361, 368
HaeIII GGCC 2 cut(s) 127, 262
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 164
Hin1II CATG 4 cut(s) 143, 220, 320, 378
HinfI GANTC 2 cut(s) 5, 71
HpaII CCGG 1 cut(s) 128
HphI GGTGA 5 cut(s) 158, 170, 233, 238, 294
Hpy188I TCNGA 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 95, 223
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
Hsp92II CATG 4 cut(s) 143, 220, 320, 378
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 6 cut(s) 40, 141, 244, 271, 288, 318
Lsp1109I GCAGC 2 cut(s) 347, 354
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 176
MboII GAAGA 2 cut(s) 296, 346
MluCI AATT 1 cut(s) 49
MnlI CCTC 8 cut(s) 84, 117, 196, 199, 217, 258, 323, 332
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 181
NaeI GCCGGC 1 cut(s) 129
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 4 cut(s) 143, 220, 320, 378
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 2 cut(s) 143, 378
PaeR7I CTCGAG 1 cut(s) 156
PciI ACATGT 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 133, 362, 369
PscI ACATGT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 255, 261
PspXI VCTCGAGB 1 cut(s) 156
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 132, 361, 368
Sau96I GGNCC 2 cut(s) 255, 261
ScrFI CCNGG 1 cut(s) 259
SetI ASST 7 cut(s) 157, 163, 228, 250, 257, 307, 362
SfaNI GCATC 1 cut(s) 162
Sfr274I CTCGAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 49
SsiI CCGC 2 cut(s) 131, 182
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 251
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 49
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 112, 141
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 360, 367
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 165, 297
TspRI CASTG 2 cut(s) 112, 141
VpaK11BI GGWCC 1 cut(s) 255
XceI RCATGY 2 cut(s) 143, 378
XhoI CTCGAG 1 cut(s) 156
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.