Prupe.8G190600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011734
Physical Location & Seq
Forward (+)
18558023 .. 18559714
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G190600.1

Sequence Viewer

Length: 444 bp
ATGGATCAAGACTTTAGGATGATGAGAAGCCAAGTGCCAGCCTTTGGGAGCTGGGATTGGAACCAAGACCTCCCATTTACTCAGTGCTTTGAGTCAGCTACGCAAGCTGGGCTTCTGCGCTACACCAGTTACTCTGATGAGGATCGTGATTTATATGTTGCTGGTGATTTGTATGAGAACGACGTCGTCACACCTGCCATGATTGTTGTTCCTCGCAGAAGGAACAAAAGTCGTCAGTCAAATGTGAAAGAAGCAAAAGAGCAAAGTTGGGTGGTGAGTGATGCGAAGGAGCCACCAAGCCCTCCTCCCAGACACAGGCCTACCCCAAAGCCTGTGGATGAAGACTTGTACAAAATCTCACCAGAGACTCTCTATGCTAAAACCAGAAAGAAGAGAGGGTTTGGCTTCTTTTCAAGCTGCTTGCTGCCAACATGTGTTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.91

Weight (kDa)

7.67

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10930 AT5G48500
fragaria_vesca FvH4_2g17840
malus_domestica MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica Prupe.8G190600_v2.0.a1
pyrus_communis pycom05g15140 pycom10g13120
rosa_chinensis RchiOBHm_Chr6g0282871
rosa_laevigata RLG00000012861
rosa_multiflora Rmu_sc0006070.1_g000001
rosa_roxburghii Rroxscaffold_7G00185920
rosa_rugosa Rorug06G0150100
rosa_samantha Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
AatII GACGTC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 202
AccB7I CCANNNNNTGG 1 cut(s) 44
AclWI GGATC 2 cut(s) 12, 150
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 44, 315
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 1 cut(s) 414
AluBI AGCT 4 cut(s) 51, 98, 107, 417
AluI AGCT 4 cut(s) 51, 98, 107, 417
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 12, 150
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 417, 424
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 176, 286, 351
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 404, 411
BcoDI GTCTC 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 2 cut(s) 418, 425
BlsI GCNGC 2 cut(s) 419, 426
BmiI GGNNCC 2 cut(s) 62, 291
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 315
Bse1I ACTGG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 2 cut(s) 24, 343
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 44, 315
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 2 cut(s) 404, 411
BseYI CCCAGC 2 cut(s) 51, 107
BshFI GGCC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 44, 315
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 4, 142
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 62, 291
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 2 cut(s) 12, 150
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 126
BssMI GATC 2 cut(s) 4, 142
BssNI GRCGYC 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 39, 105, 422
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 24, 343
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 7, 145
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 2 cut(s) 4, 142
BstMWI GCNNNNNNNGC 2 cut(s) 104, 109
BstNSI RCATGY 1 cut(s) 435
BstV1I GCAGC 2 cut(s) 404, 411
BstV2I GAAGAC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 24, 343
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 3 cut(s) 39, 105, 422
CfoI GCGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 2 cut(s) 199, 432
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 6, 144
DpnII GATC 2 cut(s) 4, 142
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 319
FaeI CATG 2 cut(s) 202, 435
FaiI YATR 6 cut(s) 154, 156, 174, 200, 375, 433
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 2 cut(s) 198, 431
Fnu4HI GCNGC 2 cut(s) 418, 425
FokI GGATG 2 cut(s) 31, 350
Fsp4HI GCNGC 2 cut(s) 418, 425
GlaI GCGC 1 cut(s) 119
GluI GCNGC 2 cut(s) 418, 425
GsaI CCCAGC 2 cut(s) 55, 111
HaeIII GGCC 1 cut(s) 319
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 202, 435
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 92, 367
HphI GGTGA 3 cut(s) 176, 286, 351
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 8, 146
Hpy99I CGWCG 2 cut(s) 185, 188
HpyAV CCTTC 2 cut(s) 213, 280
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 109
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 202, 435
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 4, 142
LmnI GCTCC 2 cut(s) 48, 289
Lsp1109I GCAGC 2 cut(s) 404, 411
LweI GCATC 1 cut(s) 271
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 128, 187
MalI GATC 2 cut(s) 6, 144
MboI GATC 2 cut(s) 4, 142
MboII GAAGA 2 cut(s) 353, 403
MlyI GAGTC 2 cut(s) 101, 361
MnlI CCTC 6 cut(s) 80, 133, 222, 312, 315, 389
MwoI GCNNNNNNNGC 2 cut(s) 104, 109
NdeII GATC 2 cut(s) 4, 142
NlaIII CATG 2 cut(s) 202, 435
NlaIV GGNNCC 2 cut(s) 62, 291
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 435
PaqCI CACCTGC 1 cut(s) 202
PceI AGGCCT 1 cut(s) 319
PciI ACATGT 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 2 cut(s) 419, 426
PleI GAGTC 2 cut(s) 100, 361
PpsI GAGTC 2 cut(s) 100, 361
PscI ACATGT 1 cut(s) 431
PspFI CCCAGC 2 cut(s) 51, 107
PspN4I GGNNCC 2 cut(s) 62, 291
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 2 cut(s) 418, 425
Sau3AI GATC 2 cut(s) 4, 142
SchI GAGTC 2 cut(s) 101, 361
SetI ASST 7 cut(s) 53, 72, 100, 109, 186, 196, 419
SfaNI GCATC 1 cut(s) 271
SseBI AGGCCT 1 cut(s) 319
StuI AGGCCT 1 cut(s) 319
TaiI ACGT 1 cut(s) 186
TatI WGTACW 1 cut(s) 348
TscAI CASTG 1 cut(s) 89
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 417, 424
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 1 cut(s) 89
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 44
XceI RCATGY 1 cut(s) 435
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.