Rh6CG265600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011734
Physical Location & Seq
Forward (+)
43864635 .. 43866769
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG265600.1

Sequence Viewer

Length: 408 bp
ATGGATCAAGACTACTATAGGAGGAGTCATCAAGTTCCTGCTTTTGGGAGCTGGGATTGGAACCAAGACCTTCCCTTCACTCAGTGCTTTGAGTCTGCAAGGCAAGCTGGGTTTCTGCGCTACACTACTTACACTGATGAACATGATCAGGATCGCGATTTGTATGTCACCGGGGATTTGTACCAGAACGATGTCGTCACTCCCGCGATGATCGTTGTTCCTCGCCGTAGGAACAAGATGCGTCACCCGCAAGTGAAAGAAGCAAAAGAGGAGGGTTGGGTCATGGGTGAGGTGAAGGAGCCACCAAGCCCACCTCCAAGGTCCAGGCCCAATCCCAAGCCTGTGGATGAAGATTTGTACAAAATCTCACCTGAACTCCTCTATGCTAAGGCCAAAAAGGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.92

Weight (kDa)

6.3

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10930 AT5G48500
fragaria_vesca FvH4_2g17840
malus_domestica MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica Prupe.8G190600_v2.0.a1
pyrus_communis pycom05g15140 pycom10g13120
rosa_chinensis RchiOBHm_Chr6g0282871
rosa_laevigata RLG00000012861
rosa_multiflora Rmu_sc0006070.1_g000001
rosa_roxburghii Rroxscaffold_7G00185920
rosa_rugosa Rorug06G0150100
rosa_samantha Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 156, 206
AciI CCGC 2 cut(s) 204, 248
AclWI GGATC 2 cut(s) 12, 159
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 2 cut(s) 182, 359
AfiI CCNNNNNNNGG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 2 cut(s) 51, 107
AluI AGCT 2 cut(s) 51, 107
AlwI GGATC 2 cut(s) 12, 159
AoxI GGCC 2 cut(s) 326, 390
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 321, 327
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 5 cut(s) 160, 236, 299, 304, 360
AvaII GGWCC 1 cut(s) 321
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 325
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 172, 325
Bme18I GGWCC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 321, 327
BmiI GGNNCC 2 cut(s) 62, 300
BmrFI CCNGG 2 cut(s) 172, 325
BmsI GCATC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 171, 317
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 171, 317
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 3 cut(s) 37, 284, 368
BseYI CCCAGC 2 cut(s) 51, 107
Bsh1236I CGCG 2 cut(s) 156, 206
BshFI GGCC 2 cut(s) 328, 392
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 2 cut(s) 328, 392
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 4 cut(s) 4, 145, 151, 210
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 2 cut(s) 204, 248
BspANI GGCC 2 cut(s) 328, 392
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 2 cut(s) 156, 206
BspLI GGNNCC 2 cut(s) 62, 300
BspPI GGATC 2 cut(s) 12, 159
BsrGI TGTACA 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 171, 317
BssMI GATC 4 cut(s) 4, 145, 151, 210
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 325
BstAUI TGTACA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 81, 387
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 2 cut(s) 156, 206
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 4 cut(s) 7, 148, 154, 213
BstMBI GATC 4 cut(s) 4, 145, 151, 210
BstMWI GCNNNNNNNGC 2 cut(s) 104, 247
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 170, 323
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 2 cut(s) 156, 206
BstXI CCANNNNNNTGG 1 cut(s) 343
BsuRI GGCC 2 cut(s) 328, 392
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 89, 132
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 321, 327
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 181, 358
CviAII CATG 2 cut(s) 143, 283
CviJI RGCY 7 cut(s) 51, 107, 301, 309, 328, 340, 392
CviKI_1 RGCY 7 cut(s) 51, 107, 301, 309, 328, 340, 392
CviQI GTAC 2 cut(s) 181, 358
DdeI CTNAG 2 cut(s) 81, 387
DpnI GATC 4 cut(s) 6, 147, 153, 212
DpnII GATC 4 cut(s) 4, 145, 151, 210
DraIII CACNNNGTG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 2 cut(s) 146, 286
FaiI YATR 5 cut(s) 18, 144, 165, 284, 384
FatI CATG 2 cut(s) 142, 282
FauI CCCGC 2 cut(s) 211, 255
FbaI TGATCA 1 cut(s) 145
FokI GGATG 1 cut(s) 359
GlaI GCGC 1 cut(s) 119
GsaI CCCAGC 2 cut(s) 55, 111
HaeIII GGCC 2 cut(s) 328, 392
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 146, 286
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 25, 92
HpaII CCGG 1 cut(s) 171
HphI GGTGA 5 cut(s) 160, 236, 299, 304, 360
Hpy188III TCNNGA 3 cut(s) 8, 149, 155
HpyAV CCTTC 3 cut(s) 80, 85, 289
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 247
HpyF3I CTNAG 2 cut(s) 81, 387
Hsp92II CATG 2 cut(s) 146, 286
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 4, 145, 151, 210
LmnI GCTCC 2 cut(s) 48, 298
LweI GCATC 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 166, 196, 242
MalI GATC 4 cut(s) 6, 147, 153, 212
MboI GATC 4 cut(s) 4, 145, 151, 210
MboII GAAGA 1 cut(s) 362
MlyI GAGTC 2 cut(s) 34, 101
MnlI CCTC 7 cut(s) 15, 231, 262, 265, 283, 324, 389
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 172, 325
MvaI CCWGG 1 cut(s) 325
MvnI CGCG 2 cut(s) 156, 206
MwoI GCNNNNNNNGC 2 cut(s) 104, 247
NciI CCSGG 1 cut(s) 172
NdeII GATC 4 cut(s) 4, 145, 151, 210
NlaIII CATG 2 cut(s) 146, 286
NlaIV GGNNCC 2 cut(s) 62, 300
NmuCI GTSAC 3 cut(s) 166, 196, 242
NruI TCGCGA 1 cut(s) 156
PleI GAGTC 2 cut(s) 33, 100
PpsI GAGTC 2 cut(s) 33, 100
Psp6I CCWGG 1 cut(s) 323
PspFI CCCAGC 2 cut(s) 51, 107
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 62, 300
PspPI GGNCC 2 cut(s) 321, 327
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 2 cut(s) 182, 359
RsaNI GTAC 2 cut(s) 181, 358
Sau3AI GATC 4 cut(s) 4, 145, 151, 210
Sau96I GGNCC 2 cut(s) 321, 327
SchI GAGTC 2 cut(s) 34, 101
ScrFI CCNGG 2 cut(s) 172, 325
SetI ASST 8 cut(s) 53, 72, 109, 294, 316, 323, 373, 402
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 321
SsiI CCGC 2 cut(s) 204, 248
StyD4I CCNGG 2 cut(s) 170, 323
StyI CCWWGG 1 cut(s) 317
TatI WGTACW 1 cut(s) 357
TscAI CASTG 2 cut(s) 89, 139
TseFI GTSAC 3 cut(s) 166, 196, 242
Tsp45I GTSAC 3 cut(s) 166, 196, 242
TspDTI ATGAA 2 cut(s) 153, 363
TspRI CASTG 2 cut(s) 89, 139
VpaK11BI GGWCC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.