pycom05g15140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011734
Physical Location & Seq
Forward (+)
18659463 .. 18660647
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g15140.1

Sequence Viewer

Length: 453 bp
ATGGATCAAGAATTTAGGATGATGAGGAGTCAAGTTCCAGCGTTTGGGAGCTGGGATTGGAACCAAGACCTTCCATTTACTCAGTGTTTTGAGTCGGCAAGGCAGGCTGGGCTTCTGCGCTACACTACTTACTCTGATGGACACGATGAGGATCGTGATCTGTACGTTGCTGGTGATCTATATGAGAATCATGTTGTCACACCTGCCATGATTGTTGTTCCTCGCAGAAGGAACAAAATGCTGCAGTCACATGTGAAAGAAGCAAAAGAGGAAAGTTGGGTGGTGAGTGACGTGAAGGAGCCACCAAGCCCTCCACCAACGCACAGGCCTACACCAAAGCCAGTGGATGAAGACTTGTACAAAATTTCACCAGACCTCCTCTATGCAAAATCCAAAAAGAAGAGAGGATTTGGGTTCTTTTCAAGCTGCTTGCTGCCAACCTGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.28

Weight (kDa)

6.42

Isoelectric Point (pI)

66.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10930 AT5G48500
fragaria_vesca FvH4_2g17840
malus_domestica MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica Prupe.8G190600_v2.0.a1
pyrus_communis pycom05g15140 pycom10g13120
rosa_chinensis RchiOBHm_Chr6g0282871
rosa_laevigata RLG00000012861
rosa_multiflora Rmu_sc0006070.1_g000001
rosa_roxburghii Rroxscaffold_7G00185920
rosa_rugosa Rorug06G0150100
rosa_samantha Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 44
AclWI GGATC 2 cut(s) 12, 159
AcsI RAATTY 2 cut(s) 11, 363
AfaI GTAC 2 cut(s) 164, 359
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 1 cut(s) 423
AjiI CACGTC 1 cut(s) 292
AluBI AGCT 2 cut(s) 51, 426
AluI AGCT 2 cut(s) 51, 426
AlwI GGATC 2 cut(s) 12, 159
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 3 cut(s) 241, 426, 433
ApoI RAATTY 2 cut(s) 11, 363
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 185, 295, 360
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 228, 413, 420
BccI CCATC 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 3 cut(s) 242, 427, 434
BlsI GCNGC 3 cut(s) 243, 428, 435
BmgBI CACGTC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 62, 300
BpiI GAAGAC 1 cut(s) 357
BsaBI GATNNNNATC 2 cut(s) 150, 156
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 341
Bse8I GATNNNNATC 2 cut(s) 150, 156
BseGI GGATG 2 cut(s) 24, 352
BseJI GATNNNNATC 2 cut(s) 150, 156
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 40, 368
BseXI GCAGC 3 cut(s) 228, 413, 420
BseYI CCCAGC 2 cut(s) 51, 107
BshFI GGCC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 4 cut(s) 4, 151, 157, 175
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 62, 300
BspMAI CTGCAG 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 2 cut(s) 12, 159
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 1 cut(s) 341
BssMI GATC 4 cut(s) 4, 151, 157, 175
Bst6I CTCTTC 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 105, 431
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 24, 352
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 4 cut(s) 7, 154, 160, 178
BstMBI GATC 4 cut(s) 4, 151, 157, 175
BstMWI GCNNNNNNNGC 2 cut(s) 104, 109
BstNSI RCATGY 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 228, 413, 420
BstV2I GAAGAC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 328
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 24, 352
BtsIMutI CAGTG 2 cut(s) 89, 348
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 105, 431
CfoI GCGC 1 cut(s) 120
Csp6I GTAC 2 cut(s) 163, 358
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviAII CATG 3 cut(s) 191, 208, 251
CviJI RGCY 8 cut(s) 51, 107, 112, 301, 309, 328, 340, 426
CviKI_1 RGCY 8 cut(s) 51, 107, 112, 301, 309, 328, 340, 426
CviQI GTAC 2 cut(s) 163, 358
DdeI CTNAG 1 cut(s) 81
DpnI GATC 4 cut(s) 6, 153, 159, 177
DpnII GATC 4 cut(s) 4, 151, 157, 175
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 328
FaeI CATG 3 cut(s) 194, 211, 254
FaiI YATR 6 cut(s) 181, 183, 192, 209, 252, 384
FatI CATG 3 cut(s) 190, 207, 250
Fnu4HI GCNGC 3 cut(s) 242, 427, 434
FokI GGATG 2 cut(s) 31, 359
Fsp4HI GCNGC 3 cut(s) 242, 427, 434
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 242, 427, 434
GsaI CCCAGC 2 cut(s) 55, 111
HaeIII GGCC 1 cut(s) 328
HhaI GCGC 1 cut(s) 120
Hin1II CATG 3 cut(s) 194, 211, 254
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 3 cut(s) 28, 92, 187
HphI GGTGA 3 cut(s) 185, 295, 360
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 8, 155
HpyAV CCTTC 3 cut(s) 80, 222, 289
HpyCH4IV ACGT 2 cut(s) 165, 291
HpyCH4V TGCA 2 cut(s) 244, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 109
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 2 cut(s) 165, 291
Hsp92II CATG 3 cut(s) 194, 211, 254
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 4 cut(s) 4, 151, 157, 175
LmnI GCTCC 2 cut(s) 48, 298
LpnPI CCDG 9 cut(s) 37, 51, 89, 93, 156, 216, 310, 354, 384
Lsp1109I GCAGC 3 cut(s) 228, 413, 420
MaeII ACGT 2 cut(s) 165, 291
MaeIII GTNAC 3 cut(s) 196, 246, 287
MalI GATC 4 cut(s) 6, 153, 159, 177
MboI GATC 4 cut(s) 4, 151, 157, 175
MboII GAAGA 2 cut(s) 362, 412
MluCI AATT 2 cut(s) 11, 363
MlyI GAGTC 2 cut(s) 37, 101
MnlI CCTC 8 cut(s) 18, 142, 231, 262, 321, 386, 389, 398
MwoI GCNNNNNNNGC 2 cut(s) 104, 109
NdeII GATC 4 cut(s) 4, 151, 157, 175
NlaIII CATG 3 cut(s) 194, 211, 254
NlaIV GGNNCC 2 cut(s) 62, 300
NmuCI GTSAC 3 cut(s) 196, 246, 287
NspI RCATGY 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 328
PciI ACATGT 1 cut(s) 250
PfeI GAWTC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 3 cut(s) 243, 428, 435
PleI GAGTC 2 cut(s) 36, 100
PpsI GAGTC 2 cut(s) 36, 100
PscI ACATGT 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 51, 107
PspN4I GGNNCC 2 cut(s) 62, 300
PstI CTGCAG 1 cut(s) 246
RsaI GTAC 2 cut(s) 164, 359
RsaNI GTAC 2 cut(s) 163, 358
SatI GCNGC 3 cut(s) 242, 427, 434
Sau3AI GATC 4 cut(s) 4, 151, 157, 175
SchI GAGTC 2 cut(s) 37, 101
SetI ASST 8 cut(s) 53, 72, 168, 205, 294, 378, 428, 443
SfcI CTRYAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 11, 363
SseBI AGGCCT 1 cut(s) 328
StuI AGGCCT 1 cut(s) 328
TaiI ACGT 2 cut(s) 168, 294
TasI AATT 2 cut(s) 11, 363
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 2 cut(s) 89, 348
TseFI GTSAC 3 cut(s) 196, 246, 287
TseI GCWGC 3 cut(s) 241, 426, 433
Tsp45I GTSAC 3 cut(s) 196, 246, 287
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 2 cut(s) 89, 348
Van91I CCANNNNNTGG 1 cut(s) 44
XapI RAATTY 2 cut(s) 11, 363
XceI RCATGY 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.