AT5G48500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011734
Physical Location & Seq
Forward (+)
19652980 .. 19654355
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48500.1

Sequence Viewer

Length: 504 bp
ATGGACTACGAATACGGAGGAGGAGAGTACTGTCGGAGAGGACACGTGCCAGCTTTTGGAAGCTGGGATTGGAACGACGCCGTTCCATTCACTCAGTGTTTCGAGACAGCAACAACTCAACAACCAGCTTTTCTTCACTATGCTTCTTACCCTCAAGATCGTGATCTTTACCTCGCCGGTGATCTCTACGACAACCACCACCTTGTAGCTCCGGCCGTTATCATTGTCCCTCGTCGCCGGGCTAAAGTGGGTCAAGAACCAGCGGAGAAGAAGAGAAATGTGTCGAAGCAGCAACACAACTATAAGACGGAGGCGCGTGAGTTTAACGCGCCGGTAAGCTGTCCAACACCGGTTGTGAAGCGGAGGATGAAGGCACCAAAGCCTGTGGATGAAGACTTGTACAAAGTTTCCCCACAACTTCTCTCAGTCAAATCCAAAAGGAAAAGAGGAGGAGGTGGGTTTGGGTGCATTTCAAGGTGTTTTTTGCCAACACGGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.97

Weight (kDa)

9.42

Isoelectric Point (pI)

72.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10930 AT5G48500
fragaria_vesca FvH4_2g17840
malus_domestica MD05G1159900.v1.1 MD10G1152300.v1.1
prunus_persica Prupe.8G190600_v2.0.a1
pyrus_communis pycom05g15140 pycom10g13120
rosa_chinensis RchiOBHm_Chr6g0282871
rosa_laevigata RLG00000012861
rosa_multiflora Rmu_sc0006070.1_g000001
rosa_roxburghii Rroxscaffold_7G00185920
rosa_rugosa Rorug06G0150100
rosa_samantha Rh6AG263500 Rh6BG266400 Rh6CG265600 Rh6DG258200
rosa_wichuraiana Rw1G003720 Rw6G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 56
AccII CGCG 2 cut(s) 316, 329
AciI CCGC 2 cut(s) 263, 361
AcoI YGGCCR 1 cut(s) 213
AcvI CACGTG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 2 cut(s) 29, 401
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 43
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 1 cut(s) 474
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 5 cut(s) 53, 63, 128, 209, 339
AluI AGCT 5 cut(s) 53, 63, 128, 209, 339
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 289
AsiGI ACCGGT 1 cut(s) 349
AspLEI GCGC 2 cut(s) 316, 331
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 191
BanI GGYRCC 1 cut(s) 373
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 301
BceAI ACGGC 2 cut(s) 65, 200
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 98
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 3 cut(s) 176, 331, 349
Bse8I GATNNNNATC 1 cut(s) 162
BseGI GGATG 2 cut(s) 372, 394
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 107, 438
BseRI GAGGAG 4 cut(s) 33, 36, 462, 465
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 316, 329
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 373
BshTI ACCGGT 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 216
BsiSI CCGG 5 cut(s) 177, 212, 238, 332, 350
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 3 cut(s) 157, 163, 181
BspACI CCGC 2 cut(s) 263, 361
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 106, 437
BspFNI CGCG 2 cut(s) 316, 329
BspLI GGNNCC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 373
BsrFI RCCGGY 3 cut(s) 176, 331, 349
BsrGI TGTACA 1 cut(s) 399
BssAI RCCGGY 3 cut(s) 176, 331, 349
BssMI GATC 3 cut(s) 157, 163, 181
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 93, 424
BstF5I GGATG 2 cut(s) 372, 394
BstFNI CGCG 2 cut(s) 316, 329
BstHHI GCGC 2 cut(s) 316, 331
BstKTI GATC 3 cut(s) 160, 166, 184
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 157, 163, 181
BstMCI CGRYCG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 237
BstUI CGCG 2 cut(s) 316, 329
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 399
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 2 cut(s) 372, 394
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 2 cut(s) 316, 331
Cfr10I RCCGGY 3 cut(s) 176, 331, 349
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 28, 400
CspAI ACCGGT 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviJI RGCY 8 cut(s) 53, 63, 128, 209, 215, 242, 339, 382
CviKI_1 RGCY 8 cut(s) 53, 63, 128, 209, 215, 242, 339, 382
CviQI GTAC 2 cut(s) 28, 400
DdeI CTNAG 2 cut(s) 93, 424
DpnI GATC 3 cut(s) 159, 165, 183
DpnII GATC 3 cut(s) 157, 163, 181
DraIII CACNNNGTG 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 213
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EclXI CGGCCG 1 cut(s) 213
Eco52I CGGCCG 1 cut(s) 213
Eco72I CACGTG 1 cut(s) 46
FaiI YATR 2 cut(s) 141, 303
FaqI GGGAC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 2 cut(s) 379, 401
Fsp4HI GCNGC 1 cut(s) 290
GlaI GCGC 2 cut(s) 315, 330
GluI GCNGC 1 cut(s) 290
GsaI CCCAGC 1 cut(s) 67
HaeIII GGCC 1 cut(s) 215
HapII CCGG 5 cut(s) 177, 212, 238, 332, 350
HgaI GACGC 1 cut(s) 86
HhaI GCGC 2 cut(s) 316, 331
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 2 cut(s) 314, 329
HinP1I GCGC 2 cut(s) 314, 329
HpaII CCGG 5 cut(s) 177, 212, 238, 332, 350
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 4 cut(s) 103, 155, 161, 254
Hpy99I CGWCG 2 cut(s) 80, 237
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 468
HpyF3I CTNAG 2 cut(s) 93, 424
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 2 cut(s) 314, 329
Kzo9I GATC 3 cut(s) 157, 163, 181
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 301
MaeII ACGT 1 cut(s) 45
MalI GATC 3 cut(s) 159, 165, 183
MboI GATC 3 cut(s) 157, 163, 181
MboII GAAGA 4 cut(s) 125, 280, 283, 404
MmeI TCCRAC 2 cut(s) 14, 368
MseI TTAA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 5 cut(s) 177, 212, 238, 332, 350
MspR9I CCNGG 1 cut(s) 239
MvnI CGCG 2 cut(s) 316, 329
NciI CCSGG 1 cut(s) 239
NdeII GATC 3 cut(s) 157, 163, 181
NlaIV GGNNCC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 56
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 1 cut(s) 291
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 46
PspCI CACGTG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 375
RsaI GTAC 2 cut(s) 29, 401
RsaNI GTAC 2 cut(s) 28, 400
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 3 cut(s) 157, 163, 181
ScaI AGTACT 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 239
SgrAI CRCCGGYG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SsiI CCGC 2 cut(s) 263, 361
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 102, 284
TatI WGTACW 2 cut(s) 27, 399
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 101
TseI GCWGC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 383, 405
TspGWI ACGGA 2 cut(s) 30, 323
TspRI CASTG 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.