AT2G13650

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008023
Physical Location & Seq
Reverse (-)
5687316 .. 5690795
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G13650.1

Sequence Viewer

Length: 1002 bp
ATGAAATTGTACGAACACGATGGAGTTGATTTAGAAGATGGGAAGACAGTAAAATCCGGAGGAGATAAACCAATTCCAAGAAAGATACATAACCGGGCTTTGTTATCCGGTTTAGCTTATTGCATTTCATCATGCAGTATGATACTTGTCAACAAGTTTGTTCTCTCCAGCTACAACTTCAATGCTGGGATCTTCCTTATGTTATACCAGAACTTTGTCTCGGTGATCATTGTGGTTGGTTTGAGTTTAATGGGTCTAATAACTACTGAACCACTTACTTTGAGGTTGATGAAGGTCTGGTTTCCAGTGAATGTCATCTTTGTTGGTATGCTTATCACAAGCATGTTTAGTTTGAAATACATCAATGTAGCAATGGTCACTGTCCTGAAGAATGTCACTAATGTGATAACTGCAGTTGGTGAGATGTATCTGTTCAACAAGCAACATGACAACAGAGTGTGGGCTGCTCTCTTCTTAATGATAATTTCCGCAGTTTCTGGAGGAATAACAGACCTATCATTCAATGCTGTTGGCTATGCTTGGCAGATTGCTAATTGCTTCTTAACTGCATCGTACTCGCTGACTTTGAGAAAGACCATGGATACGGCCAAGCAGGTTACTCAATCTGGAAACTTGAACGAGTTCTCCATGGTCTTGCTTAATAACACACTTTCATTACCACTTGGGCTTCTTCTTTCTTATTTCTTCAACGAGATGGATTATCTCTATCAAACGCCACTTCTACGATTACCAAGTTTCTGGATGGTCATGACACTTAGTGGACTTCTAGGGCTTGCCATTAGCTTTACTTCAATGTGGTTTCTTCATCAAACTGGAGCAACAACATACAGCCTGGTGGGATCTCTAAACAAGATACCTCTATCCATCGCGGGGATCGTTCTTTTCAATGTACCGACCAGTTTGCAGAACTCAGCAAGCATACTCTTTGGTCTTGTCGCTGGAGTTGTATTTGCTAGAGCCAAAATGAGGGAGAAGTCCTAA

Protein Analysis

333

Amino Acids

36.84

Weight (kDa)

9.35

Isoelectric Point (pI)

19.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 35 - 316 2.2e-12 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
AccII CGCG 1 cut(s) 890
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 2 cut(s) 489, 890
AclWI GGATC 3 cut(s) 197, 868, 902
AcoI YGGCCR 1 cut(s) 606
AcuI CTGAAG 1 cut(s) 407
AdeI CACNNNGTG 1 cut(s) 779
AfaI GTAC 3 cut(s) 11, 575, 912
AfiI CCNNNNNNNGG 2 cut(s) 891, 987
AgsI TTSAA 8 cut(s) 181, 355, 436, 523, 637, 709, 813, 907
AjnI CCWGG 1 cut(s) 852
AleI CACNNNNGTG 1 cut(s) 401
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AluBI AGCT 3 cut(s) 116, 171, 804
AluI AGCT 3 cut(s) 116, 171, 804
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 3 cut(s) 197, 868, 902
AlwNI CAGNNNCTG 1 cut(s) 497
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 1 cut(s) 464
Asp700I GAANNNNTTC 1 cut(s) 641
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 235, 431
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 451
BccI CCATC 5 cut(s) 14, 32, 709, 757, 893
BceAI ACGGC 1 cut(s) 621
BcgI CGANNNNNNTGC 4 cut(s) 558, 592, 904, 938
BciT130I CCWGG 1 cut(s) 854
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 788, 975
BfmI CTRYAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 604
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 95, 854
BmrFI CCNGG 2 cut(s) 95, 854
BmsI GCATC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 4 cut(s) 151, 519, 855, 981
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 597, 648
BsaWI WCCGGW 2 cut(s) 56, 107
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 2 cut(s) 891, 987
Bse1I ACTGG 3 cut(s) 305, 838, 918
Bse3DI GCAATG 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 1 cut(s) 854
BseDI CCNNGG 2 cut(s) 597, 648
BseGI GGATG 1 cut(s) 768
BseLI CCNNNNNNNGG 2 cut(s) 891, 987
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 945
BseNI ACTGG 3 cut(s) 305, 838, 918
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 451
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 890
BshFI GGCC 1 cut(s) 608
BsiSI CCGG 3 cut(s) 57, 94, 108
BslI CCNNNNNNNGG 2 cut(s) 891, 987
BsmAI GTCTC 1 cut(s) 223
BsnI GGCC 1 cut(s) 608
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 4 cut(s) 189, 225, 860, 894
Bsp19I CCATGG 2 cut(s) 597, 648
BspACI CCGC 2 cut(s) 489, 890
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 1 cut(s) 944
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 1 cut(s) 890
BspHI TCATGA 1 cut(s) 768
BspMAI CTGCAG 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 3 cut(s) 197, 868, 902
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 3 cut(s) 305, 838, 918
BssECI CCNNGG 2 cut(s) 597, 648
BssMI GATC 4 cut(s) 189, 225, 860, 894
BssT1I CCWWGG 2 cut(s) 597, 648
Bst2UI CCWGG 1 cut(s) 854
Bst4CI ACNGT 2 cut(s) 49, 382
Bst6I CTCTTC 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 795, 937
BstDEI CTNAG 2 cut(s) 776, 931
BstDSI CCRYGG 2 cut(s) 597, 648
BstF5I GGATG 1 cut(s) 768
BstFNI CGCG 1 cut(s) 890
BstKTI GATC 4 cut(s) 192, 228, 863, 897
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 4 cut(s) 189, 225, 860, 894
BstNI CCWGG 1 cut(s) 854
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 93, 852
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 890
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 189, 860
BstXI CCANNNNNNTGG 1 cut(s) 759
BstYI RGATCY 2 cut(s) 189, 860
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 608
BtgI CCRYGG 2 cut(s) 597, 648
BtgZI GCGATG 1 cut(s) 871
BtsCI GGATG 1 cut(s) 768
BtsIMutI CAGTG 2 cut(s) 312, 378
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 2 cut(s) 795, 937
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 768
Csp6I GTAC 3 cut(s) 10, 574, 911
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 6 cut(s) 132, 343, 446, 598, 649, 769
CviQI GTAC 3 cut(s) 10, 574, 911
DdeI CTNAG 2 cut(s) 776, 931
DpnI GATC 4 cut(s) 191, 227, 862, 896
DpnII GATC 4 cut(s) 189, 225, 860, 894
DraIII CACNNNGTG 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Eco130I CCWWGG 2 cut(s) 597, 648
Eco57I CTGAAG 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 852
EcoT14I CCWWGG 2 cut(s) 597, 648
ErhI CCWWGG 2 cut(s) 597, 648
FaeI CATG 6 cut(s) 135, 346, 449, 601, 652, 772
FatI CATG 6 cut(s) 131, 342, 445, 597, 648, 768
FauI CCCGC 1 cut(s) 883
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 1 cut(s) 775
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 788, 975
GluI GCNGC 1 cut(s) 465
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 4 cut(s) 151, 519, 855, 981
HaeIII GGCC 1 cut(s) 608
HapII CCGG 3 cut(s) 57, 94, 108
Hin1II CATG 6 cut(s) 135, 346, 449, 601, 652, 772
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaII CCGG 3 cut(s) 57, 94, 108
HphI GGTGA 2 cut(s) 235, 431
Hpy166II GTNNAC 2 cut(s) 151, 782
Hpy188III TCNNGA 6 cut(s) 57, 385, 498, 627, 760, 769
Hpy8I GTNNAC 2 cut(s) 151, 782
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 49, 382
HpyCH4V TGCA 5 cut(s) 123, 135, 413, 569, 925
HpyF3I CTNAG 2 cut(s) 776, 931
Hsp92II CATG 6 cut(s) 135, 346, 449, 601, 652, 772
Kpn2I TCCGGA 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 4 cut(s) 189, 225, 860, 894
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 578
MaeI CTAG 2 cut(s) 788, 975
MaeIII GTNAC 3 cut(s) 376, 394, 616
MalI GATC 4 cut(s) 191, 227, 862, 896
MboI GATC 4 cut(s) 189, 225, 860, 894
MboII GAAGA 8 cut(s) 47, 55, 184, 400, 463, 683, 697, 815
MflI RGATCY 2 cut(s) 189, 860
MluCI AATT 4 cut(s) 5, 72, 483, 553
MnlI CCTC 5 cut(s) 53, 276, 494, 888, 981
MroI TCCGGA 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 641
MseI TTAA 4 cut(s) 248, 476, 563, 660
MslI CAYNNNNRTG 2 cut(s) 341, 401
MspI CCGG 3 cut(s) 57, 94, 108
MspR9I CCNGG 2 cut(s) 95, 854
MvaI CCWGG 1 cut(s) 854
MvnI CGCG 1 cut(s) 890
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 2 cut(s) 597, 648
NdeII GATC 4 cut(s) 189, 225, 860, 894
NlaIII CATG 6 cut(s) 135, 346, 449, 601, 652, 772
NmuCI GTSAC 2 cut(s) 376, 394
NspI RCATGY 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 401
PagI TCATGA 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 641
PkrI GCNGC 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 852
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 852
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 2 cut(s) 189, 860
RsaI GTAC 3 cut(s) 11, 575, 912
RsaNI GTAC 3 cut(s) 10, 574, 911
RseI CAYNNNNRTG 2 cut(s) 341, 401
SaqAI TTAA 4 cut(s) 248, 476, 563, 660
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 4 cut(s) 189, 225, 860, 894
ScrFI CCNGG 2 cut(s) 95, 854
SetI ASST 8 cut(s) 118, 173, 287, 297, 516, 618, 806, 880
SfaNI GCATC 1 cut(s) 578
SfcI CTRYAG 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 341, 401
Sse9I AATT 4 cut(s) 5, 72, 483, 553
SsiI CCGC 2 cut(s) 489, 890
SspMI CTAG 2 cut(s) 788, 975
StyD4I CCNGG 2 cut(s) 93, 852
StyI CCWWGG 2 cut(s) 597, 648
TaaI ACNGT 2 cut(s) 49, 382
TasI AATT 4 cut(s) 5, 72, 483, 553
Tru1I TTAA 4 cut(s) 248, 476, 563, 660
Tru9I TTAA 4 cut(s) 248, 476, 563, 660
TscAI CASTG 2 cut(s) 312, 385
TseFI GTSAC 2 cut(s) 376, 394
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 2 cut(s) 376, 394
TspDTI ATGAA 5 cut(s) 17, 117, 305, 663, 815
TspRI CASTG 2 cut(s) 312, 385
XceI RCATGY 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 2 cut(s) 788, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.