Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000621.1

Orthogroup ID

OG0008023

Physical Location & Seq

Genomic Coordinates Forward (+)

60761 .. 65648

Gene Structure 4888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000621.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgaagccttttgaaaagaatgaagctgatttggaagatggaaagttagacaaagacagagataaaacaccacgaagtaataaggtggtcaaaatacaaaaccaggccctgttgtctggtctcgcatattgcatatcttcctgcagcatgatactagttaacaaatttgtgctttccagctatgattttaatgctggaatttctttgatgctgtaccagaacctcatctcagttattattgtgtctacattgagtttgctgggaataatatcaacggaaccactaacatggagattggttaaggtctggttgcctgtgaatgttatatttgttgggatgctcattacaagcatgtttagcttgaagtacatcaatgtagcgatggtcacagtcctgaagaatgttactaatgtgatcactgctgttggtgaaatgtatctctttcagaagcaccatgacagcagagtatggactgctctgtttctaatgataatttcagcaatttcgggaggggtgactgatttatcttttcatgccgtcggctatgcgtggcaacttactaactgtttcttaactgcatcttattctctgactctgcggagggtcatggatacagcaaagcttgttacaaaatctggaacattgaacgagttttctatggtcctgctaaataactccctttctttccccctggggattctgcttatttttcttttcaatgaggttgattacctctttaccacaccgcttctgagattgccaagcttctggttggtaataacactaagtggatttttgggtctggcaatcagcttcacttcaatgtggtttcttcatcaaacaggtgctacaacatacagccttgtagggtcactgaataagatccctctatccgttgccggaattgtacttttcaaggtcccaaccagtttagagaactccgcgagcatattctttggtcttttggcgggagtatttttcgctagagccaaaatgcgagagagatctcaatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005458 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505 GO:1990570

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

TPT

Protein Analysis

338

Amino Acids

37.58

Weight (kDa)

9.36

Isoelectric Point (pI)

20.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13650 AT2G13650 AT2G13650
fragaria_vesca	FvH4_1g24340 FvH4_1g24340 FvH4_1g24340 FvH4_1g24340
malus_domestica	MD05G1016700.v1.1 MD10G1016400.v1.1
prunus_persica	Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1
pyrus_communis	pycom05g00930 pycom10g01070
rosa_chinensis	RchiOBHm_Chr2g0120881
rosa_laevigata	RLG00000018597
rosa_multiflora	Rmu_sc0000621.1_g000015
rosa_roxburghii	Rroxscaffold_2G00122770
rosa_rugosa	Rorug02G0232300
rosa_samantha	Rh2AG288800 Rh2BG299800 Rh2CG277800 Rh2DG313900
rosa_wichuraiana	Rw2G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AccII	CGCG	1 cut(s)	944
AciI	CCGC	4 cut(s)	598, 746, 942, 968
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	2 cut(s)	164, 198
AcuI	CTGAAG	1 cut(s)	416
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	3 cut(s)	215, 368, 909
AgsI	TTSAA	6 cut(s)	14, 364, 646, 718, 822, 916
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	102, 690
AluBI	AGCT	6 cut(s)	26, 180, 360, 622, 765, 813
AluI	AGCT	6 cut(s)	26, 180, 360, 622, 765, 813
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	877
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	164, 198
AspS9I	GGNCC	3 cut(s)	106, 661, 919
AsuHPI	GGTGA	2 cut(s)	440, 526
AvaII	GGWCC	2 cut(s)	661, 919
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	32, 376
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	2 cut(s)	104, 692
BciVI	GTATCC	1 cut(s)	604
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	2 cut(s)	155, 984
BfmI	CTRYAG	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	604
BglII	AGATCT	1 cut(s)	1004
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	104, 692
Bme18I	GGWCC	2 cut(s)	661, 919
BmgT120I	GGNCC	3 cut(s)	106, 661, 919
BmiI	GGNNCC	2 cut(s)	279, 921
BmrFI	CCNGG	2 cut(s)	104, 692
BmsI	GCATC	3 cut(s)	198, 327, 587
BsaBI	GATNNNNATC	1 cut(s)	1009
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	690, 691
Bse1I	ACTGG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	1009
BseBI	CCWGG	2 cut(s)	104, 692
BseDI	CCNNGG	2 cut(s)	690, 691
BseGI	GGATG	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	1009
BseMII	CTCAG	2 cut(s)	243, 743
BseNI	ACTGG	1 cut(s)	927
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	944
BshFI	GGCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	1 cut(s)	905
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	414, 882, 1004
BspACI	CCGC	4 cut(s)	598, 746, 942, 968
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	242, 744
BspFNI	CGCG	1 cut(s)	944
BspLI	GGNNCC	2 cut(s)	279, 921
BspMAI	CTGCAG	1 cut(s)	146
BspPI	GGATC	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	927
BssECI	CCNNGG	2 cut(s)	690, 691
BssMI	GATC	3 cut(s)	414, 882, 1004
Bst2UI	CCWGG	2 cut(s)	104, 692
Bst4CI	ACNGT	2 cut(s)	391, 566
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	3 cut(s)	229, 752, 785
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	944
BstKTI	GATC	3 cut(s)	417, 885, 1007
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	414, 882, 1004
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	2 cut(s)	104, 692
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	102, 690
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	882, 1004
BstXI	CCANNNNNNTGG	2 cut(s)	288, 768
BstYI	RGATCY	2 cut(s)	882, 1004
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	342
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	417, 872
Cac8I	GCNNGC	1 cut(s)	946
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	106, 661, 919
Csp6I	GTAC	3 cut(s)	214, 367, 908
CviAII	CATG	6 cut(s)	148, 288, 352, 455, 533, 607
CviQI	GTAC	3 cut(s)	214, 367, 908
DdeI	CTNAG	3 cut(s)	229, 752, 785
DpnI	GATC	3 cut(s)	416, 884, 1006
DpnII	GATC	3 cut(s)	414, 882, 1004
DraIII	CACNNNGTG	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	661, 919
Eco57I	CTGAAG	1 cut(s)	416
EcoO109I	RGGNCCY	2 cut(s)	106, 919
EcoRII	CCWGG	2 cut(s)	102, 690
FaeI	CATG	6 cut(s)	151, 291, 355, 458, 536, 610
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	6 cut(s)	147, 287, 351, 454, 532, 606
FauI	CCCGC	1 cut(s)	961
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	155, 984
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	900
Hin1II	CATG	6 cut(s)	151, 291, 355, 458, 536, 610
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	2 cut(s)	620, 763
HinfI	GANTC	2 cut(s)	592, 697
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	2 cut(s)	440, 526
Hpy166II	GTNNAC	2 cut(s)	160, 246
Hpy188I	TCNGA	3 cut(s)	447, 591, 753
Hpy188III	TCNNGA	4 cut(s)	394, 507, 636, 1014
Hpy8I	GTNNAC	2 cut(s)	160, 246
Hpy99I	CGWCG	1 cut(s)	542
HpyCH4III	ACNGT	2 cut(s)	391, 566
HpyCH4V	TGCA	3 cut(s)	132, 144, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	3 cut(s)	229, 752, 785
Hsp92II	CATG	6 cut(s)	151, 291, 355, 458, 536, 610
Ksp22I	TGATCA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	414, 882, 1004
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	3 cut(s)	198, 327, 587
MaeI	CTAG	2 cut(s)	155, 984
MaeIII	GTNAC	5 cut(s)	385, 403, 514, 625, 870
MalI	GATC	3 cut(s)	416, 884, 1006
MboI	GATC	3 cut(s)	414, 882, 1004
MboII	GAAGA	4 cut(s)	47, 129, 409, 824
MflI	RGATCY	2 cut(s)	882, 1004
MluCI	AATT	5 cut(s)	164, 198, 492, 501, 903
MlyI	GAGTC	1 cut(s)	586
MnlI	CCTC	6 cut(s)	233, 503, 594, 715, 743, 897
MseI	TTAA	4 cut(s)	159, 189, 300, 572
MslI	CAYNNNNRTG	2 cut(s)	286, 821
MspI	CCGG	1 cut(s)	900
MspR9I	CCNGG	2 cut(s)	104, 692
MvaI	CCWGG	2 cut(s)	104, 692
MvnI	CGCG	1 cut(s)	944
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	3 cut(s)	414, 882, 1004
NlaIII	CATG	6 cut(s)	151, 291, 355, 458, 536, 610
NlaIV	GGNNCC	2 cut(s)	279, 921
NmuCI	GTSAC	3 cut(s)	385, 514, 870
NspI	RCATGY	1 cut(s)	355
PasI	CCCWGGG	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	697
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PpuMI	RGGWCCY	1 cut(s)	919
Psp5II	RGGWCCY	1 cut(s)	919
Psp6I	CCWGG	2 cut(s)	102, 690
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	2 cut(s)	102, 690
PspN4I	GGNNCC	2 cut(s)	279, 921
PspPI	GGNCC	3 cut(s)	106, 661, 919
PspPPI	RGGWCCY	1 cut(s)	919
PstI	CTGCAG	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	882, 1004
RsaI	GTAC	3 cut(s)	215, 368, 909
RsaNI	GTAC	3 cut(s)	214, 367, 908
RseI	CAYNNNNRTG	2 cut(s)	286, 821
SaqAI	TTAA	4 cut(s)	159, 189, 300, 572
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	3 cut(s)	414, 882, 1004
Sau96I	GGNCC	3 cut(s)	106, 661, 919
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	2 cut(s)	104, 692
SfaNI	GCATC	3 cut(s)	198, 327, 587
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	2 cut(s)	661, 919
SmiMI	CAYNNNNRTG	2 cut(s)	286, 821
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	5 cut(s)	164, 198, 492, 501, 903
SsiI	CCGC	4 cut(s)	598, 746, 942, 968
SspMI	CTAG	2 cut(s)	155, 984
StyD4I	CCNGG	2 cut(s)	102, 690
TaaI	ACNGT	2 cut(s)	391, 566
TasI	AATT	5 cut(s)	164, 198, 492, 501, 903
TatI	WGTACW	2 cut(s)	366, 907
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	4 cut(s)	159, 189, 300, 572
Tru9I	TTAA	4 cut(s)	159, 189, 300, 572
TscAI	CASTG	2 cut(s)	424, 879
TseFI	GTSAC	3 cut(s)	385, 514, 870
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	3 cut(s)	385, 514, 870
TspDTI	ATGAA	4 cut(s)	17, 36, 521, 824
TspGWI	ACGGA	2 cut(s)	290, 883
TspRI	CASTG	2 cut(s)	424, 879
VpaK11BI	GGWCC	2 cut(s)	661, 919
XapI	RAATTY	2 cut(s)	164, 198
XceI	RCATGY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	2 cut(s)	155, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.