Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008023

Physical Location & Seq

Genomic Coordinates Forward (+)

16221023 .. 16228019

Gene Structure 6997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAAGCCTTTTGAAAAGAATGAAGCTGATTTGGAAGATGGAAAGTTGGACAAAGACAGAGTTAAAACACCACGAAGTAATAAGGTGGTCAAAATACAAAACCAGGCCCTGTTGTCTGGTCTTGCGTATTGCATATCTTCATGCAGCATGATACTAGTTAACAAATTTGTGCTCTCCAGTTATGATTTTAATGCTGGAATTTCTTTGATGCTGTACCAGAACTTCATCTCCGTTATTATAGTGTCTACATTAAGTTTGCTGGGGGTAATATCAACAGAACCACTAACATGGAGATTGGTTAAGGTCTGGTTGCCTGTGAATGTTATATTTGTTGGGATGCTCATTACAAGCATGTTTAGCTTGAAGTACATCAATGTAGCGATGGTCACAGTCCTGAAGAATGTTACTAATGTGATAACTGCTGTTGGTGAAATGTATCTGTTTCAGAAGCATCATGACAGCAGAGTATGGGCAGCTCTGTTTCTAATGATAATCTCTGCAATTTCGGGAGGGGTGACTGATTTATCTTTTCATGCAATCGGCTATGCGTGGCAACTTGCCAACTGTTTCTTAACTGCATCTTATTCTCTGACTCTACGGAGAGTCATGGATACAGCAAAGCATGTTACAAAATCTGGAAAATTGAACGAGTTTTCTATGGTCCTGCTAAATAACTCCCTTTCTTTGCCTCTTGGGATTCTTCTTATTTTTGTTTTCAATGAGGTCGATTATCTCTTTACCACCCCACTACTGAGATTGCCATCCTTCTGGTTGGTAATAACACTAAGTGGAATTTTGGGTCTGGCAATCAGCTTCACTTCAATGTGGTTTCTTCATCAAACAGGTGCTACAACATACAGCCTTGTAGGTTCACTGAATAAGATCCCCCTATCTGTTGCCGGTATCGTACTTTTCAAGGTCCCGACCAGTTTAGAGAACTCTGCAAGCATATTCTTTGGTCTTTTGGCGGGAGTATTTTTCGCTAGAGCCAAAATGCGGGAGAGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005458 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505 GO:1990570

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

TPT

Protein Analysis

337

Amino Acids

37.3

Weight (kDa)

9.52

Isoelectric Point (pI)

19.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	38 - 326	1.9e-11	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13650 AT2G13650 AT2G13650
fragaria_vesca	FvH4_1g24340 FvH4_1g24340 FvH4_1g24340 FvH4_1g24340
malus_domestica	MD05G1016700.v1.1 MD10G1016400.v1.1
prunus_persica	Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1
pyrus_communis	pycom05g00930 pycom10g01070
rosa_chinensis	RchiOBHm_Chr2g0120881
rosa_laevigata	RLG00000018597
rosa_multiflora	Rmu_sc0000621.1_g000015
rosa_roxburghii	Rroxscaffold_2G00122770
rosa_rugosa	Rorug02G0232300
rosa_samantha	Rh2AG288800 Rh2BG299800 Rh2CG277800 Rh2DG313900
rosa_wichuraiana	Rw2G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	2 cut(s)	968, 997
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	3 cut(s)	164, 198, 792
AcuI	CTGAAG	1 cut(s)	416
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	3 cut(s)	215, 368, 909
AfiI	CCNNNNNNNGG	1 cut(s)	996
AgsI	TTSAA	6 cut(s)	14, 364, 646, 718, 822, 916
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	102
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	4 cut(s)	26, 360, 476, 813
AluI	AGCT	4 cut(s)	26, 360, 476, 813
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	877
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	144, 473
ApoI	RAATTY	3 cut(s)	164, 198, 792
AspS9I	GGNCC	3 cut(s)	106, 661, 919
AsuHPI	GGTGA	2 cut(s)	440, 526
AvaII	GGWCC	2 cut(s)	661, 919
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	156, 485
BccI	CCATC	3 cut(s)	32, 376, 769
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	604
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	2 cut(s)	155, 984
BfuI	GTATCC	1 cut(s)	604
BglII	AGATCT	1 cut(s)	1004
BisI	GCNGC	2 cut(s)	145, 474
BlsI	GCNGC	2 cut(s)	146, 475
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	661, 919
BmgT120I	GGNCC	3 cut(s)	106, 661, 919
BmiI	GGNNCC	1 cut(s)	921
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	4 cut(s)	198, 327, 460, 587
BpmI	CTGGAG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	996
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	2 cut(s)	177, 927
Bse8I	GATNNNNATC	1 cut(s)	760
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	342, 761
BseJI	GATNNNNATC	1 cut(s)	760
BseLI	CCNNNNNNNGG	1 cut(s)	996
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	2 cut(s)	177, 927
BseXI	GCAGC	2 cut(s)	156, 485
BseYI	CCCAGC	1 cut(s)	259
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	1 cut(s)	996
BsmFI	GGGAC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	882, 1004
BspACI	CCGC	2 cut(s)	968, 997
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	921
BspPI	GGATC	1 cut(s)	877
BsrFI	RCCGGY	1 cut(s)	899
BsrI	ACTGG	2 cut(s)	177, 927
BssAI	RCCGGY	1 cut(s)	899
BssMI	GATC	2 cut(s)	882, 1004
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	391, 566
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	2 cut(s)	752, 785
BstF5I	GGATG	2 cut(s)	342, 761
BstKTI	GATC	2 cut(s)	885, 1007
BstMBI	GATC	2 cut(s)	882, 1004
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	355, 626
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	156, 485
BstX2I	RGATCY	2 cut(s)	882, 1004
BstXI	CCANNNNNNTGG	2 cut(s)	288, 768
BstYI	RGATCY	2 cut(s)	882, 1004
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	342, 761
BtsIMutI	CAGTG	1 cut(s)	872
Cac8I	GCNNGC	1 cut(s)	946
CaiI	CAGNNNCTG	1 cut(s)	109
CciI	TCATGA	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	3 cut(s)	106, 661, 919
Csp6I	GTAC	3 cut(s)	214, 367, 908
CviAII	CATG	8 cut(s)	141, 148, 288, 352, 455, 533, 607, 623
CviJI	RGCY	9 cut(s)	7, 26, 107, 360, 476, 543, 813, 861, 989
CviKI_1	RGCY	9 cut(s)	7, 26, 107, 360, 476, 543, 813, 861, 989
CviQI	GTAC	3 cut(s)	214, 367, 908
DdeI	CTNAG	2 cut(s)	752, 785
DpnI	GATC	2 cut(s)	884, 1006
DpnII	GATC	2 cut(s)	882, 1004
DraIII	CACNNNGTG	1 cut(s)	788
Eco47I	GGWCC	2 cut(s)	661, 919
Eco57I	CTGAAG	1 cut(s)	416
EcoO109I	RGGNCCY	2 cut(s)	106, 919
EcoRII	CCWGG	1 cut(s)	102
FaeI	CATG	8 cut(s)	144, 151, 291, 355, 458, 536, 610, 626
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	8 cut(s)	140, 147, 287, 351, 454, 532, 606, 622
FauI	CCCGC	2 cut(s)	961, 990
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	145, 474
FokI	GGATG	2 cut(s)	349, 748
Fsp4HI	GCNGC	2 cut(s)	145, 474
FspBI	CTAG	2 cut(s)	155, 984
GluI	GCNGC	2 cut(s)	145, 474
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	900
Hin1II	CATG	8 cut(s)	144, 151, 291, 355, 458, 536, 610, 626
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	592, 603, 697
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	2 cut(s)	440, 526
Hpy166II	GTNNAC	3 cut(s)	160, 246, 872
Hpy188I	TCNGA	2 cut(s)	447, 591
Hpy188III	TCNNGA	5 cut(s)	394, 455, 507, 636, 922
Hpy8I	GTNNAC	3 cut(s)	160, 246, 872
HpyAV	CCTTC	1 cut(s)	775
HpyCH4III	ACNGT	2 cut(s)	391, 566
HpyCH4V	TGCA	6 cut(s)	132, 144, 500, 536, 578, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	2 cut(s)	752, 785
Hsp92II	CATG	8 cut(s)	144, 151, 291, 355, 458, 536, 610, 626
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	882, 1004
Lsp1109I	GCAGC	2 cut(s)	156, 485
LweI	GCATC	4 cut(s)	198, 327, 460, 587
MaeI	CTAG	2 cut(s)	155, 984
MaeIII	GTNAC	4 cut(s)	385, 403, 514, 625
MalI	GATC	2 cut(s)	884, 1006
MboI	GATC	2 cut(s)	882, 1004
MboII	GAAGA	5 cut(s)	47, 129, 409, 692, 824
MflI	RGATCY	2 cut(s)	882, 1004
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	5 cut(s)	164, 198, 501, 641, 792
MlyI	GAGTC	2 cut(s)	586, 612
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	503, 699, 715
MseI	TTAA	7 cut(s)	63, 159, 189, 251, 300, 572, 1009
MslI	CAYNNNNRTG	2 cut(s)	286, 821
MspI	CCGG	1 cut(s)	900
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	2 cut(s)	882, 1004
NlaIII	CATG	8 cut(s)	144, 151, 291, 355, 458, 536, 610, 626
NlaIV	GGNNCC	1 cut(s)	921
NmuCI	GTSAC	2 cut(s)	385, 514
NspI	RCATGY	2 cut(s)	355, 626
PagI	TCATGA	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	697
PkrI	GCNGC	2 cut(s)	146, 475
PleI	GAGTC	2 cut(s)	586, 611
PpsI	GAGTC	2 cut(s)	586, 611
PpuMI	RGGWCCY	1 cut(s)	919
Psp5II	RGGWCCY	1 cut(s)	919
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	921
PspPI	GGNCC	3 cut(s)	106, 661, 919
PspPPI	RGGWCCY	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	882, 1004
RsaI	GTAC	3 cut(s)	215, 368, 909
RsaNI	GTAC	3 cut(s)	214, 367, 908
RseI	CAYNNNNRTG	2 cut(s)	286, 821
SaqAI	TTAA	7 cut(s)	63, 159, 189, 251, 300, 572, 1009
SatI	GCNGC	2 cut(s)	145, 474
Sau3AI	GATC	2 cut(s)	882, 1004
Sau96I	GGNCC	3 cut(s)	106, 661, 919
SchI	GAGTC	2 cut(s)	586, 612
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	4 cut(s)	198, 327, 460, 587
SinI	GGWCC	2 cut(s)	661, 919
SmiMI	CAYNNNNRTG	2 cut(s)	286, 821
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	5 cut(s)	164, 198, 501, 641, 792
SsiI	CCGC	2 cut(s)	968, 997
SspMI	CTAG	2 cut(s)	155, 984
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	391, 566
TaqI	TCGA	1 cut(s)	726
TasI	AATT	5 cut(s)	164, 198, 501, 641, 792
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	7 cut(s)	63, 159, 189, 251, 300, 572, 1009
Tru9I	TTAA	7 cut(s)	63, 159, 189, 251, 300, 572, 1009
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	2 cut(s)	385, 514
TseI	GCWGC	2 cut(s)	144, 473
Tsp45I	GTSAC	2 cut(s)	385, 514
TspDTI	ATGAA	6 cut(s)	17, 36, 129, 214, 521, 824
TspGWI	ACGGA	2 cut(s)	220, 613
TspRI	CASTG	1 cut(s)	879
VpaK11BI	GGWCC	2 cut(s)	661, 919
XapI	RAATTY	3 cut(s)	164, 198, 792
XceI	RCATGY	2 cut(s)	355, 626
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	2 cut(s)	155, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.