Rh2AG288800

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008023
Physical Location & Seq
Forward (+)
35436752 .. 35441459
4708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG288800.1

Sequence Viewer

Length: 1017 bp
ATGAAGCCTTTTGAAAAGAATGAAGCTGATTTGGAAGATGGAAAGTTAGACAAAGACAGAGATAAAACGCCACGAAGTAATAAGGTGGTCAAAATACAAAACCAGGCCCTGTTGTCTGGTCTCGCATATTGCATATCTTCCTGCAGCATGATACTAGTTAACAAATTCGTGCTTTCCAGCTATGATTTTAATGCTGGAATTTCTTTGATGCTGTACCAGAACCTCATCTCAGTTATTATTGTGTCTACATTGAGTTTGCTGGGAATAATATCAACGGAACCACTAACATGGAGATTGGTTAAGGTCTGGTTGCCTGTGAATGTTATATTTGTTGGGATGCTCATTACAAGCATGTTTAGCTTGAAGTACATCAATGTAGCAATGGTCACAGTCCTGAAGAATGTTACTAATGTGATCACTGCTGTTGGTGAAATGTATCTCTTTCAGAAGCACCATGACAGCAGAGTATGGACTGCTCTGTTTCTAATGATAATTTCAGCAATTTCGGGAGGGGTGACTGATTTATCTTTTCATGCCGTCGGCTATGCGTGGCAACTTACTAACTGTTTCTTAACTGCATCTTATTCTCTGACTCTGCGGAGGGTCATGGATACAGCAAAGCTTGTTACAAAATCTGGAACATTGAACGAGTTTTCCATGGTCCTGCTAAATAACTCCCTTTCTTTCCCCCTGGGGATTCTGCTTATTTTTCTTTTCAATGAGGTTGATTACCTCTTTACCACACCACTTCTGAGATTGCCAAGCTTCTGGTTGGTAATAACACTAAGTGGATTTTTGGGTCTGGCAATCAGCTTCACTTCAATGTGGTTTCTTCATCAAACAGGTGCTACAACATACAGCCTTGTAGGTTCACTGAATAAGATCCCTCTATCCGTTGCCGGAATTGTACTTTTCAAGGTCCCAACCAGTTTAGAGAACTCGGCGAGCATATTCTTTGGTCTTTTGGCGGGAGTATTTTTCGCTAGAGCCAAAATGCGAGAGAGATCTCAATCCTGA

Protein Analysis

338

Amino Acids

37.58

Weight (kDa)

9.36

Isoelectric Point (pI)

20.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 38 - 326 4.7e-10 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 245
AciI CCGC 2 cut(s) 598, 968
AclWI GGATC 1 cut(s) 877
AcsI RAATTY 2 cut(s) 164, 198
AcuI CTGAAG 1 cut(s) 416
AdeI CACNNNGTG 1 cut(s) 788
AfaI GTAC 3 cut(s) 215, 368, 909
AgsI TTSAA 6 cut(s) 14, 364, 646, 718, 822, 916
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 2 cut(s) 102, 690
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
AluBI AGCT 6 cut(s) 26, 180, 360, 622, 765, 813
AluI AGCT 6 cut(s) 26, 180, 360, 622, 765, 813
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 877
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 164, 198
AspS9I GGNCC 3 cut(s) 106, 661, 919
AsuHPI GGTGA 2 cut(s) 440, 526
AvaII GGWCC 2 cut(s) 661, 919
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 2 cut(s) 104, 692
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 2 cut(s) 155, 984
BfmI CTRYAG 1 cut(s) 142
BfuI GTATCC 1 cut(s) 604
BglII AGATCT 1 cut(s) 1004
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 104, 692
Bme18I GGWCC 2 cut(s) 661, 919
BmgT120I GGNCC 3 cut(s) 106, 661, 919
BmiI GGNNCC 2 cut(s) 279, 921
BmrFI CCNGG 2 cut(s) 104, 692
BmsI GCATC 3 cut(s) 198, 327, 587
BsaBI GATNNNNATC 1 cut(s) 1009
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 657, 690, 691
Bse1I ACTGG 1 cut(s) 927
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 1009
BseBI CCWGG 2 cut(s) 104, 692
BseDI CCNNGG 3 cut(s) 657, 690, 691
BseGI GGATG 1 cut(s) 342
BseJI GATNNNNATC 1 cut(s) 1009
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 243, 743
BseNI ACTGG 1 cut(s) 927
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 900
BslFI GGGAC 1 cut(s) 905
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 905
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 414, 882, 1004
Bsp19I CCATGG 1 cut(s) 657
BspACI CCGC 2 cut(s) 598, 968
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 242, 744
BspLI GGNNCC 2 cut(s) 279, 921
BspMAI CTGCAG 1 cut(s) 146
BspPI GGATC 1 cut(s) 877
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 927
BssECI CCNNGG 3 cut(s) 657, 690, 691
BssMI GATC 3 cut(s) 414, 882, 1004
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 104, 692
Bst4CI ACNGT 2 cut(s) 391, 566
BstC8I GCNNGC 1 cut(s) 946
BstDEI CTNAG 3 cut(s) 229, 752, 785
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 342
BstKTI GATC 3 cut(s) 417, 885, 1007
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 414, 882, 1004
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 2 cut(s) 104, 692
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 2 cut(s) 102, 690
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 882, 1004
BstXI CCANNNNNNTGG 2 cut(s) 288, 768
BstYI RGATCY 2 cut(s) 882, 1004
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 417, 872
Cac8I GCNNGC 1 cut(s) 946
CaiI CAGNNNCTG 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 106, 661, 919
Csp6I GTAC 3 cut(s) 214, 367, 908
CviAII CATG 7 cut(s) 148, 288, 352, 455, 533, 607, 658
CviQI GTAC 3 cut(s) 214, 367, 908
DdeI CTNAG 3 cut(s) 229, 752, 785
DpnI GATC 3 cut(s) 416, 884, 1006
DpnII GATC 3 cut(s) 414, 882, 1004
DraIII CACNNNGTG 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 661, 919
Eco57I CTGAAG 1 cut(s) 416
EcoO109I RGGNCCY 2 cut(s) 106, 919
EcoRII CCWGG 2 cut(s) 102, 690
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 7 cut(s) 151, 291, 355, 458, 536, 610, 661
FaqI GGGAC 1 cut(s) 905
FatI CATG 7 cut(s) 147, 287, 351, 454, 532, 606, 657
FauI CCCGC 1 cut(s) 961
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 2 cut(s) 155, 984
GluI GCNGC 1 cut(s) 145
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 900
Hin1II CATG 7 cut(s) 151, 291, 355, 458, 536, 610, 661
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 620, 763
HinfI GANTC 2 cut(s) 592, 697
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 900
HphI GGTGA 2 cut(s) 440, 526
Hpy166II GTNNAC 3 cut(s) 160, 246, 872
Hpy188I TCNGA 3 cut(s) 447, 591, 753
Hpy188III TCNNGA 4 cut(s) 394, 507, 636, 1014
Hpy8I GTNNAC 3 cut(s) 160, 246, 872
Hpy99I CGWCG 1 cut(s) 542
HpyCH4III ACNGT 2 cut(s) 391, 566
HpyCH4V TGCA 3 cut(s) 132, 144, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 3 cut(s) 229, 752, 785
Hsp92II CATG 7 cut(s) 151, 291, 355, 458, 536, 610, 661
Ksp22I TGATCA 1 cut(s) 414
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 414, 882, 1004
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 3 cut(s) 198, 327, 587
MaeI CTAG 2 cut(s) 155, 984
MaeIII GTNAC 4 cut(s) 385, 403, 514, 625
MalI GATC 3 cut(s) 416, 884, 1006
MboI GATC 3 cut(s) 414, 882, 1004
MboII GAAGA 4 cut(s) 47, 129, 409, 824
MflI RGATCY 2 cut(s) 882, 1004
MluCI AATT 5 cut(s) 164, 198, 492, 501, 903
MlyI GAGTC 1 cut(s) 586
MnlI CCTC 6 cut(s) 233, 503, 594, 715, 743, 897
MseI TTAA 4 cut(s) 159, 189, 300, 572
MslI CAYNNNNRTG 2 cut(s) 286, 821
MspI CCGG 1 cut(s) 900
MspR9I CCNGG 2 cut(s) 104, 692
MvaI CCWGG 2 cut(s) 104, 692
MwoI GCNNNNNNNGC 1 cut(s) 357
NcoI CCATGG 1 cut(s) 657
NdeII GATC 3 cut(s) 414, 882, 1004
NlaIII CATG 7 cut(s) 151, 291, 355, 458, 536, 610, 661
NlaIV GGNNCC 2 cut(s) 279, 921
NmeAIII GCCGAG 1 cut(s) 920
NmuCI GTSAC 2 cut(s) 385, 514
NspI RCATGY 1 cut(s) 355
PasI CCCWGGG 1 cut(s) 691
PfeI GAWTC 1 cut(s) 697
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 2 cut(s) 102, 690
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 2 cut(s) 102, 690
PspN4I GGNNCC 2 cut(s) 279, 921
PspPI GGNCC 3 cut(s) 106, 661, 919
PspPPI RGGWCCY 1 cut(s) 919
PstI CTGCAG 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 882, 1004
RsaI GTAC 3 cut(s) 215, 368, 909
RsaNI GTAC 3 cut(s) 214, 367, 908
RseI CAYNNNNRTG 2 cut(s) 286, 821
SaqAI TTAA 4 cut(s) 159, 189, 300, 572
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 3 cut(s) 414, 882, 1004
Sau96I GGNCC 3 cut(s) 106, 661, 919
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 104, 692
SfaNI GCATC 3 cut(s) 198, 327, 587
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 2 cut(s) 661, 919
SmiMI CAYNNNNRTG 2 cut(s) 286, 821
SpeI ACTAGT 1 cut(s) 154
Sse9I AATT 5 cut(s) 164, 198, 492, 501, 903
SsiI CCGC 2 cut(s) 598, 968
SspMI CTAG 2 cut(s) 155, 984
StyD4I CCNGG 2 cut(s) 102, 690
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 391, 566
TasI AATT 5 cut(s) 164, 198, 492, 501, 903
TatI WGTACW 2 cut(s) 366, 907
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 4 cut(s) 159, 189, 300, 572
Tru9I TTAA 4 cut(s) 159, 189, 300, 572
TscAI CASTG 2 cut(s) 424, 879
TseFI GTSAC 2 cut(s) 385, 514
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 2 cut(s) 385, 514
TspDTI ATGAA 4 cut(s) 17, 36, 521, 824
TspGWI ACGGA 2 cut(s) 290, 883
TspRI CASTG 2 cut(s) 424, 879
VpaK11BI GGWCC 2 cut(s) 661, 919
XapI RAATTY 2 cut(s) 164, 198
XceI RCATGY 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 245
XspI CTAG 2 cut(s) 155, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.