Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008023

Physical Location & Seq

Genomic Coordinates Reverse (-)

2133334 .. 2138816

Gene Structure 5483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1016400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGTTCTTTTGAAAAGAATGATACCGATTTGGAAGGTGGAAACTTGCAAAAAGATGGAGATAAAGCAACAAGGGGTAATAAGGTGGTTAAAATACACAATCAGGCCTTGTTGTCTGGCCTTGCATATTGCCTATCCTCCTGCAGTATGATATTAGTTAACAAATTTGTCCTTTCTAGCTACGACTTTGATGCTGGAATTTCTTTGATGCTGTACCAGAACCTAGTCTCGGTTATAATAGTTTCTGTGTTGAATTTTACGGGCATCATATCAACGGAGCCACTAACATGGAGATTGGTTAAGGTCTGGTTGCCTGTGAATGTTATATTCGTTGGGATGCTCATTACAAGCATGTTTAGCTTGAAGTACATCAATGTAGCGATGGTCACAGTCCTAAAGAATGTTACCAATGTGATAACTGCGGTTGGTGAAATGTATCTATTCCAGAAGCACCACGACGGCAGAGTATGGGCTGCTCTTTTTCTAATGATAATTTCAGCAATTTCTGGAGGGGCCACTGATCTGTCTTTCCATGCCATCGGCTATGCATGGCAATTTATGAATTGTATCTTGACTGCGTCATATTCTCTGACTCTACGTAGGGTCATGGATACAGCAAAGCTTGTCACAAAATCTGGAAAGCTGAATGAGTTTTCAATGGTCTTGCTAAATAACACGCTTTCTCTGCCTTTGGGGATTCTCCTTATTTTTGTTTTCAAAGAGGTTGATTATCTCTTTACAACACCACTTTTGAGGTCTCCAACCTTCTGGATGGTAATGACGCTAAGTGGATTTTTGGGTCTTGCAATCAGCTTCACATCTATGTGGTTTCTTCATCAAACAGGTGCCACCACATACAGCCTTGTTGGGTCGTTGAATAAGATCCCTCTATCAGTTGCCGGTATTCTACTCTTCAAGGTGCCGACCAGTTTAGAGAACTCTGCTAGCATTTTCTTTGGTCTCGTGGCTGGAGTATTTTTCGCTAGAGCCAAAATGCGGGAGAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005458 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505 GO:1990570

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

TPT

Protein Analysis

337

Amino Acids

37.13

Weight (kDa)

9.36

Isoelectric Point (pI)

22.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	38 - 326	1.4e-11	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13650 AT2G13650 AT2G13650
fragaria_vesca	FvH4_1g24340 FvH4_1g24340 FvH4_1g24340 FvH4_1g24340
malus_domestica	MD05G1016700.v1.1 MD10G1016400.v1.1
prunus_persica	Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1
pyrus_communis	pycom05g00930 pycom10g01070
rosa_chinensis	RchiOBHm_Chr2g0120881
rosa_laevigata	RLG00000018597
rosa_multiflora	Rmu_sc0000621.1_g000015
rosa_roxburghii	Rroxscaffold_2G00122770
rosa_rugosa	Rorug02G0232300
rosa_samantha	Rh2AG288800 Rh2BG299800 Rh2CG277800 Rh2DG313900
rosa_wichuraiana	Rw2G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccB1I	GGYRCC	2 cut(s)	845, 919
AciI	CCGC	2 cut(s)	422, 997
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	3 cut(s)	164, 198, 253
AfaI	GTAC	2 cut(s)	215, 368
AfiI	CCNNNNNNNGG	2 cut(s)	229, 996
AgsI	TTSAA	7 cut(s)	14, 253, 364, 657, 718, 877, 916
AluBI	AGCT	6 cut(s)	180, 360, 622, 643, 813, 1007
AluI	AGCT	6 cut(s)	180, 360, 622, 643, 813, 1007
Alw26I	GTCTC	3 cut(s)	232, 762, 965
AlwI	GGATC	1 cut(s)	877
AoxI	GGCC	3 cut(s)	105, 118, 513
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	3 cut(s)	164, 198, 253
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	440
AsuNHI	GCTAGC	1 cut(s)	944
BanI	GGYRCC	2 cut(s)	845, 919
BauI	CACGAG	1 cut(s)	962
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	4 cut(s)	50, 376, 545, 766
BceAI	ACGGC	1 cut(s)	475
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciVI	GTATCC	1 cut(s)	604
BcoDI	GTCTC	3 cut(s)	232, 762, 965
BfaI	CTAG	4 cut(s)	177, 224, 945, 984
BfmI	CTRYAG	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	4 cut(s)	279, 514, 847, 921
BmsI	GCATC	4 cut(s)	181, 198, 273, 327
BmtI	GCTAGC	1 cut(s)	948
BpmI	CTGGAG	2 cut(s)	528, 990
BsaAI	YACGTR	1 cut(s)	599
BsaI	GGTCTC	2 cut(s)	762, 965
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 996
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	1 cut(s)	927
BseGI	GGATG	2 cut(s)	342, 777
BseLI	CCNNNNNNNGG	2 cut(s)	229, 996
BseNI	ACTGG	1 cut(s)	927
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	3 cut(s)	107, 120, 515
BshNI	GGYRCC	2 cut(s)	845, 919
BsiSI	CCGG	1 cut(s)	900
BslI	CCNNNNNNNGG	2 cut(s)	229, 996
BsmAI	GTCTC	3 cut(s)	232, 762, 965
BsnI	GGCC	3 cut(s)	107, 120, 515
Bso31I	GGTCTC	2 cut(s)	762, 965
Bsp143I	GATC	2 cut(s)	520, 882
BspACI	CCGC	2 cut(s)	422, 997
BspANI	GGCC	3 cut(s)	107, 120, 515
BspLI	GGNNCC	4 cut(s)	279, 514, 847, 921
BspMAI	CTGCAG	1 cut(s)	146
BspOI	GCTAGC	1 cut(s)	948
BspPI	GGATC	1 cut(s)	877
BspT107I	GGYRCC	2 cut(s)	845, 919
BspTNI	GGTCTC	2 cut(s)	762, 965
BsrFI	RCCGGY	1 cut(s)	899
BsrI	ACTGG	1 cut(s)	927
BssAI	RCCGGY	1 cut(s)	899
BssMI	GATC	2 cut(s)	520, 882
BssSI	CACGAG	1 cut(s)	962
Bst2BI	CACGAG	1 cut(s)	962
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	917
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	1 cut(s)	785
BstF5I	GGATG	2 cut(s)	342, 777
BstKTI	GATC	2 cut(s)	523, 885
BstMAI	GTCTC	3 cut(s)	232, 762, 965
BstMBI	GATC	2 cut(s)	520, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 685
BstNSI	RCATGY	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	142
BstSNI	TACGTA	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	460
BstX2I	RGATCY	1 cut(s)	882
BstXI	CCANNNNNNTGG	2 cut(s)	288, 768
BstYI	RGATCY	1 cut(s)	882
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	107, 120, 515
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	342, 777
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	2 cut(s)	567, 790
Csp6I	GTAC	2 cut(s)	214, 367
CviAII	CATG	5 cut(s)	288, 352, 533, 549, 607
CviQI	GTAC	2 cut(s)	214, 367
DdeI	CTNAG	1 cut(s)	785
DpnI	GATC	2 cut(s)	522, 884
DpnII	GATC	2 cut(s)	520, 882
Eam1104I	CTCTTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	917
Eco105I	TACGTA	1 cut(s)	599
Eco147I	AGGCCT	1 cut(s)	107
Eco31I	GGTCTC	2 cut(s)	762, 965
EcoT22I	ATGCAT	1 cut(s)	550
FaeI	CATG	5 cut(s)	291, 355, 536, 552, 610
FatI	CATG	5 cut(s)	287, 351, 532, 548, 606
FauI	CCCGC	1 cut(s)	990
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	2 cut(s)	349, 784
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	4 cut(s)	177, 224, 945, 984
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	2 cut(s)	528, 990
HaeIII	GGCC	3 cut(s)	107, 120, 515
HapII	CCGG	1 cut(s)	900
HgaI	GACGC	2 cut(s)	567, 790
Hin1II	CATG	5 cut(s)	291, 355, 536, 552, 610
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	2 cut(s)	592, 697
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	591
Hpy188III	TCNNGA	5 cut(s)	445, 507, 571, 636, 769
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	29, 775
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	5 cut(s)	49, 125, 144, 548, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 685
HpyF3I	CTNAG	1 cut(s)	785
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	5 cut(s)	291, 355, 536, 552, 610
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	520, 882
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	4 cut(s)	181, 198, 273, 327
MaeI	CTAG	4 cut(s)	177, 224, 945, 984
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	3 cut(s)	385, 403, 625
MalI	GATC	2 cut(s)	522, 884
MboI	GATC	2 cut(s)	520, 882
MboII	GAAGA	2 cut(s)	824, 904
MflI	RGATCY	1 cut(s)	882
MluCI	AATT	7 cut(s)	164, 198, 253, 492, 501, 554, 562
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	5 cut(s)	148, 503, 715, 747, 897
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	4 cut(s)	90, 159, 300, 1009
MslI	CAYNNNNRTG	3 cut(s)	286, 821, 823
MspI	CCGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	2 cut(s)	357, 685
NdeII	GATC	2 cut(s)	520, 882
NheI	GCTAGC	1 cut(s)	944
NlaIII	CATG	5 cut(s)	291, 355, 536, 552, 610
NlaIV	GGNNCC	4 cut(s)	279, 514, 847, 921
NmuCI	GTSAC	2 cut(s)	385, 625
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	697
PflFI	GACNNNGTC	1 cut(s)	577
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	236
PspN4I	GGNNCC	4 cut(s)	279, 514, 847, 921
PspPI	GGNCC	1 cut(s)	513
PstI	CTGCAG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	882
PsyI	GACNNNGTC	1 cut(s)	577
RsaI	GTAC	2 cut(s)	215, 368
RsaNI	GTAC	2 cut(s)	214, 367
RseI	CAYNNNNRTG	3 cut(s)	286, 821, 823
SaqAI	TTAA	4 cut(s)	90, 159, 300, 1009
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	520, 882
Sau96I	GGNCC	1 cut(s)	513
SchI	GAGTC	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	181, 198, 273, 327
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	3 cut(s)	286, 821, 823
SnaBI	TACGTA	1 cut(s)	599
Sse9I	AATT	7 cut(s)	164, 198, 253, 492, 501, 554, 562
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	422, 997
SspMI	CTAG	4 cut(s)	177, 224, 945, 984
StuI	AGGCCT	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	601
TasI	AATT	7 cut(s)	164, 198, 253, 492, 501, 554, 562
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	4 cut(s)	90, 159, 300, 1009
Tru9I	TTAA	4 cut(s)	90, 159, 300, 1009
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	385, 625
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	385, 625
TspDTI	ATGAA	2 cut(s)	575, 824
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	523
Tth111I	GACNNNGTC	1 cut(s)	577
XapI	RAATTY	3 cut(s)	164, 198, 253
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	4 cut(s)	177, 224, 945, 984
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.