Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008023

Physical Location & Seq

Genomic Coordinates Reverse (-)

1834704 .. 1842366

Gene Structure 7663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G020100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAATCAGTTTGAAAAGAATGAAACCGACTTGGAAGGCGGAAAATTGTTAAAAGATGGAGATAAAGCAACACGAGGTAATAAGGTGGTTAAATCACAGAATCAGGCCTTGTTGGCTGGTCTTGCATATTGCATATCGTCCTGCAGCATGATATTAGTTAACAAATTTGTGCTTTCGAGCTACAATTTTGATGCTGGAATTTCTCTGATGCTGTACCAGAACCTAGTCTCAGTTATAATCGTTTCTGTGTTGAGTTTTCTGGGCATTATATCAACCGAGCCGCTAACATGGAGATTGGTTAAGGTCTGGTTGCCTGTGAATGTTATATTCGTTGGGATGCTCATTACAAGCATGTTTAGCTTAAAGTACATCAATGTAGCAATGGTCACGGTCCTAAAGAATGTTACCAATGTGATAACTGCTATTGGTGAAATGTATCTATTCCAAAAGCACCATGACAGCAGAGTATGGGCTGCTTTGTTTCTAATGATAATTTCAGCAATTTCTGGAGGCGTGACTGATTTATCTTTCCATGCCGTCGGCTATGCATGGCAAATCATTAACTGTTTCTTGACTGCATCATATTCTCTGACTCTACGTAGGGTCATGGATACAGCAAAGCTTGTTACAAAATCTGGAAAGCTGAATGAGTTTTCAATGGTCTTGCTAAATAACACTCTTTCTCTGCCTTTGGGGATTGTGCTTATTTTTGTTTTCAGGGAGGTTGATTATCTCTTTACAACACCACTTTTGAGGTTACCAACCTTCTGGATGGTAATGACGCTAAGTGGATTTTTAGGTCTTGCAATCAGCTTCACATCTATGTGGTTTCTTCATCAAACAGGTGCCACCACATACAGCCTTGTGGGGTCGCTGAATAAGATCCCTCTATCTGTTGCTGGTATCCTACTTTTCAAAGTCCCGACCAGTTTAGAGAACTCCGCTAGCATTTTCTTTGGTCTTGTGGCTGGAGTATTTTTCGCCAGAGCCAAAATGCGGGAGAGATCTCAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005458 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505 GO:1990570

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

TPT

Protein Analysis

339

Amino Acids

37.46

Weight (kDa)

9.54

Isoelectric Point (pI)

19.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13650 AT2G13650 AT2G13650
fragaria_vesca	FvH4_1g24340 FvH4_1g24340 FvH4_1g24340 FvH4_1g24340
malus_domestica	MD05G1016700.v1.1 MD10G1016400.v1.1
prunus_persica	Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1
pyrus_communis	pycom05g00930 pycom10g01070
rosa_chinensis	RchiOBHm_Chr2g0120881
rosa_laevigata	RLG00000018597
rosa_multiflora	Rmu_sc0000621.1_g000015
rosa_roxburghii	Rroxscaffold_2G00122770
rosa_rugosa	Rorug02G0232300
rosa_samantha	Rh2AG288800 Rh2BG299800 Rh2CG277800 Rh2DG313900
rosa_wichuraiana	Rw2G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	845
AciI	CCGC	4 cut(s)	39, 281, 942, 997
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	2 cut(s)	164, 198
AfaI	GTAC	2 cut(s)	215, 368
AfiI	CCNNNNNNNGG	1 cut(s)	996
AgsI	TTSAA	3 cut(s)	14, 657, 916
AluBI	AGCT	5 cut(s)	180, 360, 622, 643, 813
AluI	AGCT	5 cut(s)	180, 360, 622, 643, 813
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	877
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	144, 473
ApoI	RAATTY	2 cut(s)	164, 198
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	440
AsuNHI	GCTAGC	1 cut(s)	944
AvaII	GGWCC	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	845
BauI	CACGAG	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	156, 460
BccI	CCATC	2 cut(s)	50, 766
BceAI	ACGGC	1 cut(s)	521
BciVI	GTATCC	2 cut(s)	604, 914
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	224, 945
BfmI	CTRYAG	1 cut(s)	142
BfuI	GTATCC	2 cut(s)	604, 914
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	1004
BisI	GCNGC	3 cut(s)	145, 281, 474
BlsI	GCNGC	3 cut(s)	146, 282, 475
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	847
BmsI	GCATC	4 cut(s)	181, 198, 327, 587
BmtI	GCTAGC	1 cut(s)	948
BpmI	CTGGAG	2 cut(s)	528, 990
BsaAI	YACGTR	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	1009
Bsc4I	CCNNNNNNNGG	1 cut(s)	996
Bse1I	ACTGG	1 cut(s)	927
Bse3DI	GCAATG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	1009
BseGI	GGATG	2 cut(s)	342, 777
BseJI	GATNNNNATC	1 cut(s)	1009
BseLI	CCNNNNNNNGG	1 cut(s)	996
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	927
BseXI	GCAGC	2 cut(s)	156, 460
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	845
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	1 cut(s)	996
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	882, 1004
BspACI	CCGC	4 cut(s)	39, 281, 942, 997
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	847
BspMAI	CTGCAG	1 cut(s)	146
BspOI	GCTAGC	1 cut(s)	948
BspPI	GGATC	1 cut(s)	877
BspT107I	GGYRCC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	927
BssMI	GATC	2 cut(s)	882, 1004
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	391, 566
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	2 cut(s)	229, 785
BstEII	GGTNACC	1 cut(s)	756
BstF5I	GGATG	2 cut(s)	342, 777
BstKTI	GATC	2 cut(s)	885, 1007
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	882, 1004
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 357
BstNSI	RCATGY	1 cut(s)	355
BstPI	GGTNACC	1 cut(s)	756
BstSFI	CTRYAG	1 cut(s)	142
BstSNI	TACGTA	1 cut(s)	599
BstV1I	GCAGC	2 cut(s)	156, 460
BstX2I	RGATCY	2 cut(s)	882, 1004
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	2 cut(s)	882, 1004
BsuI	GTATCC	2 cut(s)	604, 914
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	342, 777
Cac8I	GCNNGC	1 cut(s)	946
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	214, 367
CviAII	CATG	7 cut(s)	148, 288, 352, 455, 533, 549, 607
CviQI	GTAC	2 cut(s)	214, 367
DdeI	CTNAG	2 cut(s)	229, 785
DpnI	GATC	2 cut(s)	884, 1006
DpnII	GATC	2 cut(s)	882, 1004
EciI	GGCGGA	1 cut(s)	54
Eco105I	TACGTA	1 cut(s)	599
Eco147I	AGGCCT	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	391
Eco91I	GGTNACC	1 cut(s)	756
EcoO65I	GGTNACC	1 cut(s)	756
EcoT22I	ATGCAT	1 cut(s)	550
FaeI	CATG	7 cut(s)	151, 291, 355, 458, 536, 552, 610
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	7 cut(s)	147, 287, 351, 454, 532, 548, 606
FauI	CCCGC	1 cut(s)	990
Fnu4HI	GCNGC	3 cut(s)	145, 281, 474
FokI	GGATG	2 cut(s)	349, 784
Fsp4HI	GCNGC	3 cut(s)	145, 281, 474
FspBI	CTAG	2 cut(s)	224, 945
GluI	GCNGC	3 cut(s)	145, 281, 474
GsuI	CTGGAG	2 cut(s)	528, 990
HaeIII	GGCC	1 cut(s)	107
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	7 cut(s)	151, 291, 355, 458, 536, 552, 610
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	3 cut(s)	4, 100, 592
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	207, 591
Hpy188III	TCNNGA	6 cut(s)	507, 571, 636, 769, 922, 1014
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	29, 775
HpyCH4III	ACNGT	2 cut(s)	391, 566
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	6 cut(s)	125, 132, 144, 548, 578, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 357
HpyF3I	CTNAG	2 cut(s)	229, 785
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	7 cut(s)	151, 291, 355, 458, 536, 552, 610
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	882, 1004
Lsp1109I	GCAGC	2 cut(s)	156, 460
LweI	GCATC	4 cut(s)	181, 198, 327, 587
MaeI	CTAG	2 cut(s)	224, 945
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	5 cut(s)	385, 403, 514, 625, 756
MalI	GATC	2 cut(s)	884, 1006
MboI	GATC	2 cut(s)	882, 1004
MboII	GAAGA	1 cut(s)	824
MflI	RGATCY	2 cut(s)	882, 1004
MluCI	AATT	6 cut(s)	44, 164, 184, 198, 492, 501
MlyI	GAGTC	1 cut(s)	586
MnlI	CCTC	5 cut(s)	68, 503, 715, 747, 897
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	6 cut(s)	50, 90, 159, 300, 362, 561
MslI	CAYNNNNRTG	2 cut(s)	821, 823
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 357
NdeII	GATC	2 cut(s)	882, 1004
NheI	GCTAGC	1 cut(s)	944
NlaIII	CATG	7 cut(s)	151, 291, 355, 458, 536, 552, 610
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	2 cut(s)	385, 514
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	4, 100
PkrI	GCNGC	3 cut(s)	146, 282, 475
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	847
PspPI	GGNCC	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	882, 1004
RsaI	GTAC	2 cut(s)	215, 368
RsaNI	GTAC	2 cut(s)	214, 367
RseI	CAYNNNNRTG	2 cut(s)	821, 823
SaqAI	TTAA	6 cut(s)	50, 90, 159, 300, 362, 561
SatI	GCNGC	3 cut(s)	145, 281, 474
Sau3AI	GATC	2 cut(s)	882, 1004
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	181, 198, 327, 587
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	821, 823
SnaBI	TACGTA	1 cut(s)	599
Sse9I	AATT	6 cut(s)	44, 164, 184, 198, 492, 501
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	4 cut(s)	39, 281, 942, 997
SspMI	CTAG	2 cut(s)	224, 945
StuI	AGGCCT	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	391, 566
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	1 cut(s)	176
TasI	AATT	6 cut(s)	44, 164, 184, 198, 492, 501
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	4, 100
Tru1I	TTAA	6 cut(s)	50, 90, 159, 300, 362, 561
Tru9I	TTAA	6 cut(s)	50, 90, 159, 300, 362, 561
TseFI	GTSAC	2 cut(s)	385, 514
TseI	GCWGC	2 cut(s)	144, 473
Tsp45I	GTSAC	2 cut(s)	385, 514
TspDTI	ATGAA	3 cut(s)	17, 36, 824
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	164, 198
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	2 cut(s)	224, 945
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.